Wall clock time and date at job start Tue Mar 31 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00145 * 2 1 4 4 O 1.21545 * 119.99898 * 175.49545 * 3 2 1 5 5 C 1.47882 * 120.00012 * 355.49347 * 3 2 1 6 6 C 1.39926 * 120.02248 * 221.42676 * 5 3 2 7 7 C 1.38326 * 120.35378 * 179.71730 * 6 5 3 8 8 C 1.37750 * 120.41534 * 0.55148 * 7 6 5 9 9 C 1.40751 * 120.03714 * 359.72555 * 8 7 6 10 10 C 1.41444 * 120.17559 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99734 * 29.01822 * 10 9 8 12 12 C 1.39933 * 119.99738 * 209.01874 * 10 9 8 13 13 N 1.30830 * 120.00260 * 10.62780 * 12 10 9 14 14 Si 1.86801 * 119.99960 * 190.63286 * 12 10 9 15 15 H 1.48500 * 109.47125 * 59.99467 * 14 12 10 16 16 H 1.48496 * 109.47099 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47036 * 299.99886 * 14 12 10 18 18 C 1.38991 * 120.02565 * 41.69167 * 5 3 2 19 19 C 1.46503 * 119.99664 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.53331 * 179.89725 * 19 2 1 21 21 C 1.53119 * 109.50666 * 299.99619 * 19 2 1 22 22 C 1.53114 * 109.16265 * 177.59372 * 21 19 2 23 23 C 1.53044 * 109.27926 * 302.35053 * 22 21 19 24 24 N 1.46839 * 109.52526 * 59.17787 * 23 22 21 25 25 C 1.39676 * 111.00134 * 174.15948 * 24 23 22 26 26 C 1.38910 * 120.07467 * 235.76714 * 25 24 23 27 27 C 1.38104 * 119.92005 * 179.76516 * 26 25 24 28 28 C 1.38284 * 120.07623 * 0.51718 * 27 26 25 29 29 C 1.38278 * 120.15162 * 359.73734 * 28 27 26 30 30 C 1.38106 * 120.07410 * 0.02562 * 29 28 27 31 31 C 1.46853 * 111.19967 * 298.25864 * 24 23 22 32 32 H 1.09001 * 109.46833 * 275.23967 * 1 2 3 33 33 H 1.08994 * 109.47121 * 35.23976 * 1 2 3 34 34 H 1.09002 * 109.47380 * 155.24192 * 1 2 3 35 35 H 1.07994 * 119.81856 * 359.97102 * 6 5 3 36 36 H 1.08005 * 119.79053 * 180.25376 * 7 6 5 37 37 H 1.08006 * 119.98230 * 179.69657 * 8 7 6 38 38 H 0.96999 * 119.99843 * 179.97438 * 13 12 10 39 39 H 1.07999 * 120.20410 * 0.02949 * 18 5 3 40 40 H 1.09000 * 109.51778 * 57.69521 * 21 19 2 41 41 H 1.08995 * 109.51973 * 297.50308 * 21 19 2 42 42 H 1.08995 * 109.50570 * 182.40599 * 22 21 19 43 43 H 1.09002 * 109.53469 * 62.30806 * 22 21 19 44 44 H 1.09003 * 109.46021 * 179.19743 * 23 22 21 45 45 H 1.08997 * 109.46060 * 299.15989 * 23 22 21 46 46 H 1.07995 * 120.03834 * 0.02562 * 26 25 24 47 47 H 1.08000 * 119.95976 * 180.25506 * 27 26 25 48 48 H 1.08002 * 119.92562 * 179.76764 * 28 27 26 49 49 H 1.08007 * 119.96759 * 179.97438 * 29 28 27 50 50 H 1.07998 * 120.04135 * 180.02562 * 30 29 28 51 51 H 1.08998 * 109.45786 * 301.72876 * 31 24 23 52 52 H 1.08992 * 109.46320 * 181.76150 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1687 0.0827 5 6 1.4030 2.4459 -0.1006 6 6 1.8946 3.4747 -0.9117 7 6 1.2087 4.6714 -1.0154 8 6 0.0402 4.8687 -0.3131 9 6 -0.4666 3.8474 0.5123 10 6 -1.6665 4.0466 1.2344 11 1 -2.4249 4.7115 0.8483 12 6 -1.8706 3.3822 2.4488 13 7 -0.8812 2.7450 3.0203 14 14 -3.5560 3.4051 3.2541 15 1 -4.5507 2.7917 2.3379 16 1 -3.5093 2.6331 4.5218 17 1 -3.9478 4.8081 3.5425 18 6 0.2253 2.6288 0.6147 19 6 2.1974 -1.2688 -0.0006 20 1 3.2693 -1.0708 -0.0023 21 6 1.8281 -2.0729 1.2491 22 6 2.5513 -3.4220 1.2105 23 6 2.1680 -4.1643 -0.0718 24 7 2.5424 -3.3545 -1.2382 25 6 2.3274 -4.0577 -2.4257 26 6 3.3697 -4.2390 -3.3259 27 6 3.1548 -4.9390 -4.4968 28 6 1.9011 -5.4500 -4.7785 29 6 0.8600 -5.2669 -3.8871 30 6 1.0692 -4.5721 -2.7120 31 6 1.8245 -2.0735 -1.2478 32 1 -0.3633 0.0939 1.0234 33 1 -0.3633 0.8393 -0.5929 34 1 -0.3634 -0.9332 -0.4304 35 1 2.8123 3.3320 -1.4628 36 1 1.5943 5.4579 -1.6474 37 1 -0.4871 5.8077 -0.3955 38 1 -1.0227 2.2847 3.8624 39 1 -0.1553 1.8392 1.2456 40 1 0.7509 -2.2376 1.2709 41 1 2.1316 -1.5222 2.1394 42 1 2.2591 -4.0164 2.0762 43 1 3.6288 -3.2586 1.2282 44 1 2.6924 -5.1192 -0.1092 45 1 1.0924 -4.3401 -0.0820 46 1 4.3480 -3.8365 -3.1083 47 1 3.9658 -5.0838 -5.1952 48 1 1.7349 -5.9938 -5.6967 49 1 -0.1180 -5.6669 -4.1103 50 1 0.2558 -4.4297 -2.0159 51 1 0.7505 -2.2592 -1.2524 52 1 2.0992 -1.5099 -2.1393 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079358448.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:00 Heat of formation + Delta-G solvation = 11.453717 kcal Electronic energy + Delta-G solvation = -32774.661185 eV Core-core repulsion = 28703.052235 eV Total energy + Delta-G solvation = -4071.608949 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 5.19 seconds Orbital eigenvalues (eV) -41.72030 -40.79876 -39.18462 -38.55900 -36.58631 -35.50250 -34.26691 -32.34177 -31.83573 -31.59763 -30.57258 -29.90635 -28.04187 -27.14692 -25.56975 -24.96645 -23.61792 -23.16291 -22.83626 -22.23107 -20.75476 -20.35694 -18.98522 -18.51646 -17.99174 -17.35459 -16.97316 -16.70401 -16.56915 -16.40020 -16.11860 -15.91649 -15.64079 -15.32641 -14.95076 -14.74920 -14.64862 -14.46067 -14.37269 -14.28977 -14.10998 -13.89125 -13.66729 -13.60408 -13.26608 -13.05873 -12.90602 -12.74457 -12.54162 -12.51670 -12.42253 -12.20844 -12.15827 -11.97033 -11.90375 -11.71516 -11.61808 -11.48214 -11.08261 -10.70461 -9.87426 -9.84916 -9.62430 -9.47744 -9.42576 -9.31943 -8.59108 -6.37898 0.33456 0.47161 0.47682 1.00336 1.42802 1.50447 1.53634 1.80576 1.96268 2.23359 2.74942 2.80358 2.84020 3.54734 3.64063 3.68529 3.87115 3.92215 4.02582 4.04379 4.09258 4.14876 4.25973 4.27155 4.40208 4.41838 4.48119 4.51293 4.54568 4.57821 4.63833 4.70277 4.76753 4.77325 4.84885 4.88059 4.89525 5.02571 5.10764 5.12030 5.16306 5.20300 5.28108 5.34287 5.43861 5.48212 5.56531 5.58706 5.60948 5.82419 5.86985 5.92648 5.95693 6.03853 6.26751 6.29965 6.43323 6.58417 6.91642 6.93125 7.13290 8.36863 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.002526 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.687774 B =11080.515977 C =11772.847615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.600 5.600 3 C 0.566 3.434 4 O -0.586 6.586 5 C -0.134 4.134 6 C -0.197 4.197 7 C -0.099 4.099 8 C -0.214 4.214 9 C 0.070 3.930 10 C -0.490 4.490 11 H 0.080 0.920 12 C 0.038 3.962 13 N -0.834 5.834 14 Si 0.981 3.019 15 H -0.255 1.255 16 H -0.272 1.272 17 H -0.264 1.264 18 C -0.131 4.131 19 C 0.145 3.855 20 H 0.080 0.920 21 C -0.124 4.124 22 C -0.106 4.106 23 C 0.061 3.939 24 N -0.509 5.509 25 C 0.074 3.926 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.126 4.126 29 C -0.116 4.116 30 C -0.157 4.157 31 C 0.071 3.929 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.287 0.713 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.124 0.876 47 H 0.144 0.856 48 H 0.146 0.854 49 H 0.141 0.859 50 H 0.123 0.877 51 H 0.053 0.947 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -19.420 -8.434 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.358 3.642 4 O -0.468 6.468 5 C -0.137 4.137 6 C -0.217 4.217 7 C -0.117 4.117 8 C -0.234 4.234 9 C 0.068 3.932 10 C -0.520 4.520 11 H 0.099 0.901 12 C -0.176 4.176 13 N -0.461 5.461 14 Si 0.802 3.198 15 H -0.179 1.179 16 H -0.196 1.196 17 H -0.189 1.189 18 C -0.151 4.151 19 C 0.042 3.958 20 H 0.098 0.902 21 C -0.163 4.163 22 C -0.144 4.144 23 C -0.065 4.065 24 N -0.231 5.231 25 C -0.020 4.020 26 C -0.131 4.131 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.135 4.135 30 C -0.177 4.177 31 C -0.057 4.057 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.142 0.858 47 H 0.162 0.838 48 H 0.164 0.836 49 H 0.159 0.841 50 H 0.141 0.859 51 H 0.071 0.929 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.932 -19.459 -8.113 21.103 hybrid contribution -1.151 0.491 0.589 1.383 sum -0.219 -18.968 -7.523 20.406 Atomic orbital electron populations 1.22052 0.78171 1.03631 1.02101 1.47720 1.07780 1.04915 1.72672 1.18878 0.86416 0.84803 0.74125 1.90629 1.15509 1.88079 1.52601 1.19711 0.97474 0.93921 1.02643 1.20597 1.01312 0.94840 1.04927 1.20804 0.95260 0.96387 0.99294 1.21449 0.98465 0.98780 1.04660 1.17967 0.93342 0.90694 0.91236 1.19752 1.02400 1.25144 1.04724 0.90150 1.26670 1.01653 0.92275 0.97028 1.69828 1.33400 1.26364 1.16501 0.85264 0.77441 0.79426 0.77698 1.17927 1.19637 1.18899 1.21876 0.94352 0.98706 1.00140 1.21016 0.97245 0.82085 0.95498 0.90220 1.21910 1.01534 0.96502 0.96319 1.21535 1.00819 0.94458 0.97566 1.22229 0.99490 0.96250 0.88489 1.59392 1.58476 1.03613 1.01601 1.18935 0.93413 0.97730 0.91883 1.21234 0.98833 0.99048 0.94017 1.21403 0.98309 0.97245 0.96600 1.21524 0.92774 0.99866 1.00223 1.21338 1.00240 0.98274 0.93600 1.21791 0.96877 1.00225 0.98846 1.22207 0.96509 0.89663 0.97271 0.92663 0.91307 0.88801 0.88060 0.85369 0.87272 0.90219 0.84762 0.90584 0.92710 0.88467 0.91536 0.89368 0.93335 0.85825 0.83774 0.83596 0.84117 0.85902 0.92904 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.70 7.91 127.77 1.01 3.71 16 2 N -0.60 -22.10 2.77 -825.66 -2.28 -24.38 16 3 C 0.57 26.09 7.32 86.80 0.64 26.72 16 4 O -0.59 -30.03 16.28 -3.86 -0.06 -30.09 16 5 C -0.13 -6.52 5.15 -20.13 -0.10 -6.62 16 6 C -0.20 -9.21 9.65 22.70 0.22 -8.99 16 7 C -0.10 -4.37 10.01 22.18 0.22 -4.15 16 8 C -0.21 -10.11 9.78 22.77 0.22 -9.88 16 9 C 0.07 3.58 5.55 -21.32 -0.12 3.47 16 10 C -0.49 -24.70 9.06 23.47 0.21 -24.49 16 11 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 12 C 0.04 1.78 5.25 85.25 0.45 2.22 16 13 N -0.83 -41.50 10.85 21.82 0.24 -41.26 16 14 Si 0.98 35.90 29.57 68.60 2.03 37.93 16 15 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 16 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 18 C -0.13 -6.54 6.23 23.01 0.14 -6.39 16 19 C 0.14 4.52 2.68 45.04 0.12 4.64 16 20 H 0.08 2.97 6.91 -2.39 -0.02 2.96 16 21 C -0.12 -3.18 5.32 30.67 0.16 -3.02 16 22 C -0.11 -2.09 6.09 30.65 0.19 -1.90 16 23 C 0.06 1.16 5.06 86.33 0.44 1.60 16 24 N -0.51 -11.85 4.62 -695.39 -3.21 -15.06 16 25 C 0.07 1.61 4.68 38.21 0.18 1.79 16 26 C -0.11 -2.31 9.97 22.40 0.22 -2.08 16 27 C -0.12 -1.89 10.04 22.25 0.22 -1.66 16 28 C -0.13 -1.81 10.04 22.29 0.22 -1.59 16 29 C -0.12 -1.81 10.04 22.25 0.22 -1.58 16 30 C -0.16 -2.96 8.74 22.40 0.20 -2.76 16 31 C 0.07 1.88 4.50 86.33 0.39 2.27 16 32 H 0.05 1.91 6.85 -2.39 -0.02 1.90 16 33 H 0.07 2.52 6.01 -2.39 -0.01 2.50 16 34 H 0.09 2.34 6.41 -2.39 -0.02 2.32 16 35 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 39 H 0.13 6.66 3.71 -2.91 -0.01 6.65 16 40 H 0.08 1.76 7.60 -2.39 -0.02 1.74 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 45 H 0.05 0.83 7.15 -2.39 -0.02 0.81 16 46 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 48 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 49 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 50 H 0.12 2.11 7.13 -2.91 -0.02 2.09 16 51 H 0.05 1.27 6.27 -2.39 -0.01 1.25 16 52 H 0.06 1.81 8.11 -2.39 -0.02 1.80 16 Total: -1.00 -63.58 409.73 3.09 -60.50 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: 0.92 Total: 41.07 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 5.46 Total: -28.71 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -5.26 Total: -80.70 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -63.58 3.09 -60.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079358448.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.950 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.19 seconds