Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47119 * 2 1 4 4 C 1.50700 * 109.46901 * 119.99844 * 2 1 3 5 5 H 1.08003 * 119.99985 * 120.00433 * 4 2 1 6 6 C 1.37878 * 119.99812 * 299.99495 * 4 2 1 7 7 N 1.31519 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99753 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46834 * 60.00983 * 8 6 4 10 10 H 1.48500 * 109.47164 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47399 * 300.00401 * 8 6 4 12 12 N 1.46498 * 109.47011 * 239.99733 * 2 1 3 13 13 C 1.46498 * 120.00058 * 299.99759 * 12 2 1 14 14 C 1.34775 * 119.99860 * 120.00268 * 12 2 1 15 15 O 1.21558 * 120.00374 * 4.86690 * 14 12 2 16 16 C 1.47850 * 119.99988 * 184.87166 * 14 12 2 17 17 C 1.39593 * 120.14187 * 320.84628 * 16 14 12 18 18 C 1.37941 * 119.85172 * 179.97438 * 17 16 14 19 19 C 1.38377 * 120.14718 * 0.04908 * 18 17 16 20 20 C 1.38346 * 120.29120 * 359.97221 * 19 18 17 21 21 C 1.50690 * 119.92718 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.47157 * 270.02377 * 21 20 19 23 23 C 1.35756 * 117.00392 * 180.02562 * 22 21 20 24 24 C 1.38969 * 119.90003 * 359.72782 * 23 22 21 25 25 C 1.37737 * 120.09148 * 179.72587 * 24 23 22 26 26 C 1.39756 * 119.90357 * 0.54458 * 25 24 23 27 27 C 1.43205 * 120.09443 * 179.70558 * 26 25 24 28 28 N 9.64888 * 120.75362 * 264.56396 * 19 1 2 29 29 C 1.39756 * 119.81080 * 359.72577 * 26 25 24 30 30 C 1.37723 * 119.90501 * 0.02562 * 29 26 25 31 31 C 1.37978 * 120.14401 * 0.02562 * 20 19 18 32 32 H 1.09003 * 109.47408 * 300.00390 * 1 2 3 33 33 H 1.09000 * 109.47104 * 60.00608 * 1 2 3 34 34 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 35 35 H 0.96993 * 119.99925 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47241 * 265.49107 * 13 12 2 37 37 H 1.09004 * 109.47348 * 25.49226 * 13 12 2 38 38 H 1.09002 * 109.46970 * 145.48839 * 13 12 2 39 39 H 1.07999 * 120.07640 * 359.97438 * 17 16 14 40 40 H 1.08003 * 119.92615 * 180.02562 * 18 17 16 41 41 H 1.07992 * 119.85897 * 179.97438 * 19 18 17 42 42 H 1.09005 * 109.47432 * 30.02028 * 21 20 19 43 43 H 1.08998 * 109.47145 * 150.02618 * 21 20 19 44 44 H 1.07999 * 119.95371 * 359.97405 * 24 23 22 45 45 H 1.07998 * 120.05001 * 180.25151 * 25 24 23 46 46 H 1.08004 * 120.04252 * 179.97438 * 29 26 25 47 47 H 1.08006 * 119.95367 * 179.97438 * 30 29 26 48 48 H 1.07993 * 120.07438 * 179.71795 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1600 1.0991 -1.8485 16 6 3.1970 -0.6975 -3.3422 17 6 3.5381 -2.0511 -3.3445 18 6 3.9134 -2.6627 -4.5225 19 6 3.9532 -1.9371 -5.7002 20 6 3.6169 -0.5952 -5.7048 21 6 3.6637 0.1872 -6.9918 22 8 4.9638 0.7570 -7.1558 23 6 5.1752 1.4989 -8.2730 24 6 4.1502 1.6690 -9.1958 25 6 4.3587 2.4255 -10.3278 26 6 5.6066 3.0129 -10.5532 27 6 5.8297 3.7950 -11.7319 28 7 6.0048 4.4128 -12.6694 29 6 6.6363 2.8345 -9.6253 30 6 6.4177 2.0808 -8.4935 31 6 3.2396 0.0286 -4.5333 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 0.7082 1.1611 3.4843 36 1 2.4555 -2.7361 -1.0419 37 1 0.7291 -2.3213 -0.9167 38 1 1.5453 -2.2659 -2.4975 39 1 3.5082 -2.6183 -2.4259 40 1 4.1772 -3.7100 -4.5257 41 1 4.2482 -2.4205 -6.6198 42 1 3.4500 -0.4774 -7.8290 43 1 2.9195 0.9830 -6.9605 44 1 3.1877 1.2107 -9.0232 45 1 3.5604 2.5606 -11.0426 46 1 7.6022 3.2865 -9.7959 47 1 7.2130 1.9421 -7.7760 48 1 2.9817 1.0772 -4.5373 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = 21.795544 kcal Electronic energy + Delta-G solvation = -30341.970658 eV Core-core repulsion = 26134.977070 eV Total energy + Delta-G solvation = -4206.993589 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 4.65 seconds Orbital eigenvalues (eV) -40.80195 -40.01749 -38.62036 -37.85776 -36.45146 -35.44682 -33.29858 -32.38991 -31.65509 -31.17978 -30.64974 -29.24479 -27.00266 -26.27826 -25.26434 -23.85234 -23.81098 -23.32165 -21.74949 -20.84646 -19.38092 -18.78737 -18.58528 -17.05079 -16.58030 -16.49363 -16.34968 -16.02233 -15.53984 -15.17582 -14.96233 -14.71194 -14.47930 -14.36256 -14.23434 -14.09825 -14.03836 -13.78158 -13.20018 -13.04909 -13.02205 -12.71010 -12.67858 -12.56917 -12.41170 -12.36455 -11.84709 -11.59697 -11.51001 -11.41909 -11.28297 -11.10673 -11.00324 -10.81417 -10.75119 -10.31037 -10.20241 -9.63959 -9.24019 -9.16909 -9.03037 -8.85692 -8.70549 -8.46071 -7.67471 -6.10415 -4.18718 0.38783 0.78759 0.91072 1.16200 2.30919 2.53685 2.71782 3.25801 3.30455 3.31449 3.34390 3.42327 3.53002 3.74593 3.94122 4.19422 4.27667 4.36823 4.45772 4.53342 4.59773 4.76867 4.85225 4.90922 4.96332 5.04282 5.07087 5.20186 5.24781 5.42012 5.43020 5.52974 5.63322 5.71939 5.75456 5.82118 5.85085 5.96458 6.08109 6.20131 6.24456 6.30305 6.36224 6.70656 6.73998 6.78964 6.88779 6.99510 7.13442 7.36128 7.45843 7.66782 7.96207 8.14443 8.43616 8.77417 8.95097 9.47736 10.94893 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.001617 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.906091 B =17310.210302 C =17894.079099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.081 3.919 14 C 0.542 3.458 15 O -0.544 6.544 16 C -0.116 4.116 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.082 4.082 20 C -0.113 4.113 21 C 0.103 3.897 22 O -0.300 6.300 23 C 0.168 3.832 24 C -0.215 4.215 25 C -0.026 4.026 26 C -0.078 4.078 27 C 0.260 3.740 28 N -0.427 5.427 29 C -0.028 4.028 30 C -0.154 4.154 31 C -0.045 4.045 32 H 0.095 0.905 33 H 0.012 0.988 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.144 0.856 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -5.895 -23.134 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.063 4.063 14 C 0.329 3.671 15 O -0.423 6.423 16 C -0.119 4.119 17 C -0.100 4.100 18 C -0.149 4.149 19 C -0.100 4.100 20 C -0.113 4.113 21 C 0.029 3.971 22 O -0.212 6.212 23 C 0.120 3.880 24 C -0.233 4.233 25 C -0.046 4.046 26 C -0.082 4.082 27 C -0.055 4.055 28 N -0.103 5.103 29 C -0.049 4.049 30 C -0.172 4.172 31 C -0.063 4.063 32 H 0.113 0.887 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.158 0.842 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.161 0.839 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.299 -4.271 -24.093 25.036 hybrid contribution 0.000 -0.868 1.230 1.505 sum 5.299 -5.138 -22.864 24.026 Atomic orbital electron populations 1.22108 0.98058 0.99460 1.00939 1.18998 0.90897 0.94572 0.79779 0.91775 1.21256 1.31999 1.13043 0.90226 0.92314 1.24890 0.94906 0.94963 0.98966 1.69861 1.36208 1.22556 1.23934 0.86539 0.79266 0.79537 0.81947 1.20224 1.21154 1.20237 1.48182 1.48319 1.11625 1.23277 1.21888 1.01413 0.83132 0.99839 1.18243 0.79597 0.86031 0.83248 1.90755 1.55292 1.18672 1.77561 1.20237 1.02598 0.94385 0.94664 1.21867 0.95158 0.93670 0.99265 1.21087 1.01241 1.00308 0.92290 1.21127 0.97044 0.93347 0.98478 1.19246 1.04355 0.94120 0.93617 1.21688 0.83079 0.96552 0.95768 1.86218 1.34145 1.62441 1.38395 1.19361 0.93840 0.89336 0.85448 1.21239 1.00073 1.05678 0.96347 1.20947 0.95018 0.92623 0.96040 1.15906 0.96224 1.03950 0.92139 1.25681 0.93759 0.93156 0.92858 1.81286 1.07561 1.10339 1.11134 1.20977 0.98036 0.94590 0.91252 1.20416 0.96106 1.01259 0.99466 1.21085 0.95190 0.99694 0.90378 0.88672 0.96938 0.95019 0.92579 0.93116 0.90568 0.92389 0.84174 0.85270 0.85748 0.90547 0.90442 0.84209 0.84709 0.84284 0.83862 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.96 37.16 0.33 -3.08 16 2 C 0.26 6.43 2.63 -69.08 -0.18 6.25 16 3 H 0.06 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.95 8.37 -34.44 -0.29 -14.23 16 5 H 0.06 1.52 7.65 -52.48 -0.40 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.58 -12.13 2.75 -176.37 -0.49 -12.61 16 13 C 0.08 1.29 8.09 59.85 0.48 1.77 16 14 C 0.54 11.19 7.35 -12.33 -0.09 11.10 16 15 O -0.54 -13.47 16.25 5.32 0.09 -13.38 16 16 C -0.12 -1.80 5.24 -104.97 -0.55 -2.35 16 17 C -0.08 -1.02 7.57 -39.18 -0.30 -1.32 16 18 C -0.13 -1.28 10.03 -39.64 -0.40 -1.68 16 19 C -0.08 -0.74 9.69 -39.49 -0.38 -1.13 16 20 C -0.11 -1.17 5.50 -104.68 -0.58 -1.74 16 21 C 0.10 0.79 4.85 36.00 0.17 0.96 16 22 O -0.30 -2.76 10.11 -18.98 -0.19 -2.95 16 23 C 0.17 1.27 6.69 -39.04 -0.26 1.01 16 24 C -0.21 -1.27 9.01 -39.49 -0.36 -1.62 16 25 C -0.03 -0.14 9.75 -39.20 -0.38 -0.53 16 26 C -0.08 -0.52 5.74 -106.83 -0.61 -1.13 16 27 C 0.26 2.23 15.33 -22.46 -0.34 1.89 16 28 N -0.43 -4.74 18.54 41.85 0.78 -3.96 16 29 C -0.03 -0.16 9.75 -39.20 -0.38 -0.55 16 30 C -0.15 -1.03 9.97 -39.50 -0.39 -1.43 16 31 C -0.04 -0.60 9.28 -39.18 -0.36 -0.97 16 32 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.05 0.75 6.89 -51.93 -0.36 0.39 16 37 H 0.08 1.24 6.44 -51.93 -0.33 0.90 16 38 H 0.06 0.76 5.82 -51.93 -0.30 0.45 16 39 H 0.14 1.70 5.30 -52.49 -0.28 1.42 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.08 0.39 7.58 -51.93 -0.39 0.00 16 43 H 0.08 0.51 7.60 -51.93 -0.39 0.12 16 44 H 0.14 0.57 6.27 -52.49 -0.33 0.24 16 45 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 48 H 0.13 1.82 8.05 -52.49 -0.42 1.39 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -33.28 406.92 -8.94 -42.22 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.91 Total: 0.07 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.96 Total: -7.12 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.92 Total: -40.64 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.11 Total: -16.33 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.28 -8.94 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.020 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.65 seconds