Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47119 * 2 1 4 4 C 1.50700 * 109.46901 * 119.99844 * 2 1 3 5 5 H 1.08003 * 119.99985 * 120.00433 * 4 2 1 6 6 C 1.37878 * 119.99812 * 299.99495 * 4 2 1 7 7 N 1.31519 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99753 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46834 * 60.00983 * 8 6 4 10 10 H 1.48500 * 109.47164 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47399 * 300.00401 * 8 6 4 12 12 N 1.46498 * 109.47011 * 239.99733 * 2 1 3 13 13 C 1.46498 * 120.00058 * 299.99759 * 12 2 1 14 14 C 1.34775 * 119.99860 * 120.00268 * 12 2 1 15 15 O 1.21558 * 120.00374 * 4.86690 * 14 12 2 16 16 C 1.47850 * 119.99988 * 184.87166 * 14 12 2 17 17 C 1.39593 * 120.14187 * 320.84628 * 16 14 12 18 18 C 1.37941 * 119.85172 * 179.97438 * 17 16 14 19 19 C 1.38377 * 120.14718 * 0.04908 * 18 17 16 20 20 C 1.38346 * 120.29120 * 359.97221 * 19 18 17 21 21 C 1.50690 * 119.92718 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.47157 * 270.02377 * 21 20 19 23 23 C 1.35756 * 117.00392 * 180.02562 * 22 21 20 24 24 C 1.38969 * 119.90003 * 359.72782 * 23 22 21 25 25 C 1.37737 * 120.09148 * 179.72587 * 24 23 22 26 26 C 1.39756 * 119.90357 * 0.54458 * 25 24 23 27 27 C 1.43205 * 120.09443 * 179.70558 * 26 25 24 28 28 N 9.64888 * 120.75362 * 264.56396 * 19 1 2 29 29 C 1.39756 * 119.81080 * 359.72577 * 26 25 24 30 30 C 1.37723 * 119.90501 * 0.02562 * 29 26 25 31 31 C 1.37978 * 120.14401 * 0.02562 * 20 19 18 32 32 H 1.09003 * 109.47408 * 300.00390 * 1 2 3 33 33 H 1.09000 * 109.47104 * 60.00608 * 1 2 3 34 34 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 35 35 H 0.96993 * 119.99925 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47241 * 265.49107 * 13 12 2 37 37 H 1.09004 * 109.47348 * 25.49226 * 13 12 2 38 38 H 1.09002 * 109.46970 * 145.48839 * 13 12 2 39 39 H 1.07999 * 120.07640 * 359.97438 * 17 16 14 40 40 H 1.08003 * 119.92615 * 180.02562 * 18 17 16 41 41 H 1.07992 * 119.85897 * 179.97438 * 19 18 17 42 42 H 1.09005 * 109.47432 * 30.02028 * 21 20 19 43 43 H 1.08998 * 109.47145 * 150.02618 * 21 20 19 44 44 H 1.07999 * 119.95371 * 359.97405 * 24 23 22 45 45 H 1.07998 * 120.05001 * 180.25151 * 25 24 23 46 46 H 1.08004 * 120.04252 * 179.97438 * 29 26 25 47 47 H 1.08006 * 119.95367 * 179.97438 * 30 29 26 48 48 H 1.07993 * 120.07438 * 179.71795 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1600 1.0991 -1.8485 16 6 3.1970 -0.6975 -3.3422 17 6 3.5381 -2.0511 -3.3445 18 6 3.9134 -2.6627 -4.5225 19 6 3.9532 -1.9371 -5.7002 20 6 3.6169 -0.5952 -5.7048 21 6 3.6637 0.1872 -6.9918 22 8 4.9638 0.7570 -7.1558 23 6 5.1752 1.4989 -8.2730 24 6 4.1502 1.6690 -9.1958 25 6 4.3587 2.4255 -10.3278 26 6 5.6066 3.0129 -10.5532 27 6 5.8297 3.7950 -11.7319 28 7 6.0048 4.4128 -12.6694 29 6 6.6363 2.8345 -9.6253 30 6 6.4177 2.0808 -8.4935 31 6 3.2396 0.0286 -4.5333 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 0.7082 1.1611 3.4843 36 1 2.4555 -2.7361 -1.0419 37 1 0.7291 -2.3213 -0.9167 38 1 1.5453 -2.2659 -2.4975 39 1 3.5082 -2.6183 -2.4259 40 1 4.1772 -3.7100 -4.5257 41 1 4.2482 -2.4205 -6.6198 42 1 3.4500 -0.4774 -7.8290 43 1 2.9195 0.9830 -6.9605 44 1 3.1877 1.2107 -9.0232 45 1 3.5604 2.5606 -11.0426 46 1 7.6022 3.2865 -9.7959 47 1 7.2130 1.9421 -7.7760 48 1 2.9817 1.0772 -4.5373 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079361756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = 3.651850 kcal Electronic energy + Delta-G solvation = -30342.757428 eV Core-core repulsion = 26134.977070 eV Total energy + Delta-G solvation = -4207.780358 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.51255 -41.10172 -39.59603 -38.70175 -37.21217 -37.14749 -34.97439 -33.45679 -32.30107 -32.10901 -31.30593 -30.84156 -28.00429 -27.41217 -27.30120 -25.11704 -24.34775 -23.87703 -22.74556 -22.21414 -20.27888 -19.87164 -19.14902 -18.55907 -18.00214 -17.66218 -17.14711 -16.97652 -16.91878 -16.32210 -16.13335 -15.66737 -15.43820 -15.25662 -15.07038 -14.92027 -14.72977 -14.52102 -14.48480 -14.39916 -14.17156 -13.79557 -13.73934 -13.48662 -13.27860 -13.24868 -13.10584 -12.95475 -12.90119 -12.71830 -12.69949 -12.49039 -12.20640 -12.14059 -12.02703 -11.85100 -11.74607 -11.20048 -10.76135 -10.51375 -10.07647 -9.92773 -9.84024 -9.37135 -9.24162 -8.14737 -6.31740 -0.13983 -0.02097 0.26856 0.35296 1.42111 1.44724 1.52015 1.64594 1.78689 1.94047 2.25158 2.26601 2.47418 2.89346 2.91001 2.95860 3.13190 3.59693 3.62718 3.82277 3.91203 3.96031 4.07748 4.16034 4.21314 4.31602 4.37098 4.44005 4.50947 4.60592 4.62189 4.67101 4.71850 4.86065 4.89705 4.98458 5.00720 5.02074 5.03794 5.06246 5.26621 5.35786 5.36598 5.42507 5.46082 5.47858 5.61544 5.62517 5.65174 5.92940 6.01741 6.14461 6.36337 6.49393 6.74634 6.76014 7.26449 7.43384 8.89510 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.001617 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.906091 B =17310.210302 C =17894.079099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.007 0.993 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.591 5.591 13 C 0.079 3.921 14 C 0.533 3.467 15 O -0.605 6.605 16 C -0.144 4.144 17 C -0.086 4.086 18 C -0.119 4.119 19 C -0.066 4.066 20 C -0.108 4.108 21 C 0.100 3.900 22 O -0.320 6.320 23 C 0.155 3.845 24 C -0.212 4.212 25 C -0.021 4.021 26 C -0.089 4.089 27 C 0.285 3.715 28 N -0.477 5.477 29 C -0.023 4.023 30 C -0.164 4.164 31 C -0.061 4.061 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.161 0.839 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.146 0.854 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -9.462 -25.199 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.185 1.185 12 N -0.320 5.320 13 C -0.062 4.062 14 C 0.323 3.677 15 O -0.488 6.488 16 C -0.147 4.147 17 C -0.105 4.105 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.108 4.108 21 C 0.026 3.974 22 O -0.234 6.234 23 C 0.108 3.892 24 C -0.230 4.230 25 C -0.041 4.041 26 C -0.093 4.093 27 C -0.029 4.029 28 N -0.154 5.154 29 C -0.043 4.043 30 C -0.183 4.183 31 C -0.080 4.080 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.160 0.840 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.179 0.821 45 H 0.172 0.828 46 H 0.172 0.828 47 H 0.164 0.836 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.636 -7.886 -26.183 27.920 hybrid contribution -0.067 0.239 1.789 1.806 sum 5.569 -7.647 -24.394 26.164 Atomic orbital electron populations 1.21883 0.96800 1.00333 1.00029 1.18600 0.91806 0.92185 0.81603 0.97478 1.21530 1.32085 1.13152 0.91043 0.92011 1.25751 0.95027 0.95633 1.02053 1.70014 1.37203 1.23869 1.24530 0.85490 0.78329 0.79071 0.78009 1.20392 1.20964 1.18452 1.48159 1.48241 1.13450 1.22116 1.22142 1.01631 0.80304 1.02157 1.19132 0.78462 0.85460 0.84635 1.90699 1.57575 1.21500 1.79053 1.19858 1.06353 0.95975 0.92500 1.21921 0.95572 0.92138 1.00848 1.21494 0.99199 1.01926 0.91035 1.21643 0.94345 0.92515 0.99871 1.19503 1.02858 0.95100 0.93349 1.21834 0.82810 0.97295 0.95440 1.86164 1.34798 1.63052 1.39338 1.19567 0.94575 0.89623 0.85445 1.21437 1.00484 1.05375 0.95703 1.21177 0.94992 0.91692 0.96239 1.16010 0.97131 1.04432 0.91685 1.25906 0.92330 0.92168 0.92485 1.81309 1.09185 1.12134 1.12744 1.21122 0.98584 0.93972 0.90607 1.20546 0.96316 1.01585 0.99840 1.21070 0.96568 0.99054 0.91311 0.91233 0.96119 0.93067 0.92610 0.91659 0.90858 0.89065 0.83972 0.81525 0.81698 0.86963 0.89889 0.82107 0.82791 0.82753 0.83580 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.96 71.98 0.64 -5.70 16 2 C 0.26 13.68 2.63 44.25 0.12 13.79 16 3 H 0.01 0.46 6.91 -2.38 -0.02 0.44 16 4 C -0.54 -29.35 8.37 25.60 0.21 -29.14 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.59 -25.41 2.75 -830.20 -2.29 -27.69 16 13 C 0.08 2.46 8.09 127.77 1.03 3.49 16 14 C 0.53 23.28 7.35 86.79 0.64 23.91 16 15 O -0.60 -32.64 16.25 -3.90 -0.06 -32.70 16 16 C -0.14 -4.52 5.24 -20.09 -0.11 -4.62 16 17 C -0.09 -1.99 7.57 22.53 0.17 -1.82 16 18 C -0.12 -1.77 10.03 22.23 0.22 -1.55 16 19 C -0.07 -0.88 9.69 22.33 0.22 -0.66 16 20 C -0.11 -1.94 5.50 -19.90 -0.11 -2.05 16 21 C 0.10 1.21 4.85 71.23 0.35 1.56 16 22 O -0.32 -5.20 10.11 -90.82 -0.92 -6.12 16 23 C 0.16 2.02 6.69 22.62 0.15 2.17 16 24 C -0.21 -1.89 9.01 22.33 0.20 -1.69 16 25 C -0.02 -0.18 9.75 22.52 0.22 0.04 16 26 C -0.09 -1.02 5.74 -21.30 -0.12 -1.14 16 27 C 0.28 4.61 15.33 88.33 1.35 5.96 16 28 N -0.48 -10.45 18.54 19.01 0.35 -10.10 16 29 C -0.02 -0.23 9.75 22.52 0.22 -0.01 16 30 C -0.16 -1.97 9.97 22.32 0.22 -1.75 16 31 C -0.06 -1.65 9.28 22.53 0.21 -1.44 16 32 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 2.20 6.66 -2.38 -0.02 2.18 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.07 1.83 6.89 -2.39 -0.02 1.81 16 37 H 0.07 2.29 6.44 -2.39 -0.02 2.28 16 38 H 0.09 2.21 5.82 -2.39 -0.01 2.19 16 39 H 0.14 3.13 5.30 -2.91 -0.02 3.12 16 40 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 42 H 0.11 0.57 7.58 -2.38 -0.02 0.55 16 43 H 0.08 0.91 7.60 -2.39 -0.02 0.89 16 44 H 0.16 0.69 6.27 -2.91 -0.02 0.68 16 45 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 46 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.11 3.36 8.05 -2.91 -0.02 3.33 16 Total: -1.00 -79.36 406.92 6.65 -72.71 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.01 Total: 11.10 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.29 Total: 0.65 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -1.69 Total: -90.43 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.98 Total: -38.81 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -79.36 6.65 -72.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.364 kcal (2) G-P(sol) polarization free energy of solvation -79.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds