Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47579 * 2 1 4 4 C 1.50707 * 109.46864 * 239.99964 * 2 1 3 5 5 H 1.08000 * 119.99819 * 240.00098 * 4 2 1 6 6 C 1.37874 * 119.99767 * 60.00412 * 4 2 1 7 7 N 1.31518 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47100 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47095 * 300.00575 * 8 6 4 11 11 H 1.48509 * 109.46542 * 60.00054 * 8 6 4 12 12 N 1.46498 * 109.46913 * 120.00590 * 2 1 3 13 13 C 1.46496 * 120.00385 * 59.99982 * 12 2 1 14 14 C 1.34786 * 119.99900 * 239.99263 * 12 2 1 15 15 O 1.21552 * 119.99545 * 6.99047 * 14 12 2 16 16 C 1.47839 * 120.00051 * 186.98467 * 14 12 2 17 17 C 1.39606 * 120.14649 * 20.30425 * 16 14 12 18 18 C 1.37931 * 119.85380 * 179.78634 * 17 16 14 19 19 C 1.38379 * 120.14445 * 0.48916 * 18 17 16 20 20 C 1.38343 * 120.29390 * 359.74009 * 19 18 17 21 21 C 1.50702 * 119.92660 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47173 * 270.02360 * 21 20 19 23 23 C 1.35754 * 116.99918 * 180.02562 * 22 21 20 24 24 C 1.38956 * 119.90870 * 359.72190 * 23 22 21 25 25 C 1.37736 * 120.09733 * 179.72292 * 24 23 22 26 26 C 1.39752 * 119.89958 * 0.55237 * 25 24 23 27 27 C 1.43209 * 120.09085 * 179.70174 * 26 25 24 28 28 N 9.64894 * 118.19839 * 110.64776 * 19 1 2 29 29 C 1.39756 * 119.81680 * 359.72476 * 26 25 24 30 30 C 1.37728 * 119.90064 * 359.97438 * 29 26 25 31 31 C 1.37978 * 120.14650 * 0.02562 * 20 19 18 32 32 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46516 * 299.99929 * 1 2 3 34 34 H 1.09000 * 109.47176 * 59.99467 * 1 2 3 35 35 H 0.97002 * 119.99703 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.47669 * 85.92450 * 13 12 2 37 37 H 1.09003 * 109.47213 * 205.93270 * 13 12 2 38 38 H 1.09002 * 109.47013 * 325.92214 * 13 12 2 39 39 H 1.07999 * 120.06919 * 359.97438 * 17 16 14 40 40 H 1.07996 * 119.92689 * 180.22763 * 18 17 16 41 41 H 1.08000 * 119.85324 * 179.76600 * 19 18 17 42 42 H 1.09005 * 109.47135 * 30.02295 * 21 20 19 43 43 H 1.08998 * 109.46782 * 150.02012 * 21 20 19 44 44 H 1.08003 * 119.94944 * 359.97438 * 24 23 22 45 45 H 1.08001 * 120.04848 * 180.25331 * 25 24 23 46 46 H 1.08001 * 120.05064 * 179.97438 * 29 26 25 47 47 H 1.08001 * 119.95175 * 179.97438 * 30 29 26 48 48 H 1.07994 * 120.07216 * 179.97438 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8267 -0.4197 -5.2204 10 1 3.8073 -1.1191 -4.0078 11 1 1.8277 -2.5197 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 2.9828 1.1584 1.9594 16 6 3.4126 -0.7700 3.2072 17 6 3.5653 -2.1560 3.1399 18 6 4.1480 -2.8344 4.1901 19 6 4.5716 -2.1453 5.3128 20 6 4.4190 -0.7724 5.3879 21 6 4.8839 -0.0302 6.6144 22 8 3.8170 0.0383 7.5626 23 6 4.0718 0.6797 8.7316 24 6 5.3280 1.2271 8.9621 25 6 5.5890 1.8836 10.1445 26 6 4.5917 1.9887 11.1178 27 6 4.8605 2.6648 12.3513 28 7 5.0714 3.1987 13.3312 29 6 3.3314 1.4317 10.8843 30 6 3.0771 0.7823 9.6967 31 6 3.8421 -0.0811 4.3424 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 0.7090 1.1616 -3.4843 36 1 2.3752 -2.7377 0.9107 37 1 1.6943 -2.3037 2.4970 38 1 0.6601 -2.2821 1.0485 39 1 3.2306 -2.6955 2.2662 40 1 4.2700 -3.9061 4.1377 41 1 5.0238 -2.6816 6.1340 42 1 5.7306 -0.5547 7.0573 43 1 5.1872 0.9788 6.3351 44 1 6.0996 1.1412 8.2113 45 1 6.5644 2.3124 10.3211 46 1 2.5580 1.5103 11.6341 47 1 2.1035 0.3512 9.5155 48 1 3.7231 0.9906 4.4025 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = 35.110244 kcal Electronic energy + Delta-G solvation = -30375.486858 eV Core-core repulsion = 26169.070638 eV Total energy + Delta-G solvation = -4206.416220 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.80978 -40.07759 -38.62467 -37.84065 -36.46785 -35.52096 -33.41565 -32.34425 -31.65896 -31.15226 -30.66154 -29.25477 -27.12237 -26.29977 -25.26831 -23.81830 -23.81114 -23.31321 -21.69792 -20.85796 -19.38697 -18.87787 -18.59261 -17.04949 -16.57115 -16.55111 -16.32946 -15.95037 -15.50977 -15.17674 -14.88636 -14.61335 -14.55244 -14.40038 -14.24672 -14.14673 -14.04486 -13.78635 -13.23593 -13.07554 -12.96593 -12.80878 -12.69412 -12.58622 -12.46959 -12.31372 -11.88049 -11.58365 -11.51919 -11.32028 -11.22324 -11.12424 -10.95969 -10.74457 -10.64740 -10.31019 -10.18888 -9.64570 -9.23993 -9.16574 -9.00361 -8.85035 -8.71153 -8.47105 -7.66844 -6.11357 -4.20169 0.38277 0.78132 0.88889 1.17269 2.30860 2.53370 2.72043 3.24675 3.29494 3.30521 3.33252 3.41851 3.52486 3.81528 4.01404 4.19404 4.27475 4.35673 4.46471 4.54558 4.59624 4.78444 4.84701 4.92121 4.96214 5.04498 5.09037 5.18966 5.24462 5.41435 5.44594 5.52387 5.59463 5.71969 5.77050 5.81410 5.87075 5.93034 6.07464 6.17434 6.26282 6.31687 6.36447 6.72536 6.76103 6.81551 6.88176 7.01392 7.12978 7.36541 7.46526 7.66285 7.96821 8.13326 8.43717 8.76064 8.94897 9.46459 10.93833 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.001611 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.250900 B =17375.469006 C =17912.049118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.073 3.927 14 C 0.544 3.456 15 O -0.548 6.548 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.135 4.135 19 C -0.079 4.079 20 C -0.116 4.116 21 C 0.103 3.897 22 O -0.300 6.300 23 C 0.168 3.832 24 C -0.214 4.214 25 C -0.025 4.025 26 C -0.078 4.078 27 C 0.260 3.740 28 N -0.427 5.427 29 C -0.028 4.028 30 C -0.154 4.154 31 C -0.040 4.040 32 H 0.030 0.970 33 H 0.012 0.988 34 H 0.094 0.906 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.143 0.857 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.690 -6.873 22.193 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.070 4.070 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.153 4.153 19 C -0.098 4.098 20 C -0.117 4.117 21 C 0.029 3.971 22 O -0.213 6.213 23 C 0.120 3.880 24 C -0.233 4.233 25 C -0.046 4.046 26 C -0.082 4.082 27 C -0.054 4.054 28 N -0.103 5.103 29 C -0.049 4.049 30 C -0.173 4.173 31 C -0.059 4.059 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.174 0.826 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.158 0.842 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.161 0.839 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.819 -5.387 23.362 24.926 hybrid contribution 0.456 -0.743 -1.381 1.633 sum 7.275 -6.131 21.980 23.951 Atomic orbital electron populations 1.22090 0.98091 0.99418 1.00981 1.18995 0.91091 0.94513 0.79561 0.91769 1.21259 1.32111 1.13110 0.90225 0.92306 1.24890 0.94898 0.94960 0.98961 1.69871 1.36146 1.22473 1.23949 0.86539 0.79230 0.79561 0.81954 1.21141 1.20235 1.20214 1.48143 1.48359 1.11649 1.23262 1.22176 1.01568 0.83480 0.99821 1.18208 0.79709 0.86866 0.82118 1.90727 1.62370 1.14536 1.75143 1.20257 1.02229 0.94050 0.95963 1.22539 0.95025 0.93796 0.99930 1.21121 0.99929 1.00241 0.93964 1.21157 0.97702 0.93106 0.97796 1.19255 1.03936 0.93959 0.94512 1.21699 0.88425 1.00703 0.86272 1.86203 1.40170 1.70688 1.24226 1.19357 0.93158 0.89728 0.85754 1.21247 0.97116 1.05010 0.99936 1.20953 0.98133 0.94324 0.91198 1.15908 0.96242 1.05995 0.90076 1.25655 0.93751 0.93227 0.92818 1.81257 1.07628 1.10131 1.11284 1.20973 0.94759 0.92973 0.96176 1.20408 0.99821 1.04448 0.92607 1.21150 0.93011 1.00562 0.91152 0.95051 0.96847 0.88727 0.92559 0.92514 0.91391 0.90969 0.82621 0.85290 0.85799 0.90558 0.90378 0.84187 0.84695 0.84298 0.83896 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.94 37.16 0.33 -3.13 16 2 C 0.26 6.47 2.63 -69.08 -0.18 6.28 16 3 H 0.06 1.87 6.92 -51.93 -0.36 1.51 16 4 C -0.53 -13.89 8.37 -34.44 -0.29 -14.18 16 5 H 0.06 1.50 7.53 -52.49 -0.40 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.58 -12.16 2.75 -176.38 -0.49 -12.65 16 13 C 0.07 1.15 7.92 59.84 0.47 1.63 16 14 C 0.54 11.24 7.52 -12.33 -0.09 11.15 16 15 O -0.55 -13.39 15.88 5.32 0.08 -13.31 16 16 C -0.12 -1.92 5.57 -104.97 -0.58 -2.50 16 17 C -0.09 -1.20 7.61 -39.18 -0.30 -1.50 16 18 C -0.13 -1.33 10.03 -39.64 -0.40 -1.73 16 19 C -0.08 -0.74 9.69 -39.49 -0.38 -1.12 16 20 C -0.12 -1.22 5.50 -104.68 -0.58 -1.80 16 21 C 0.10 0.80 4.85 36.01 0.17 0.98 16 22 O -0.30 -2.71 10.11 -18.97 -0.19 -2.90 16 23 C 0.17 1.25 6.69 -39.04 -0.26 0.99 16 24 C -0.21 -1.27 9.01 -39.50 -0.36 -1.63 16 25 C -0.03 -0.14 9.75 -39.20 -0.38 -0.53 16 26 C -0.08 -0.51 5.74 -106.83 -0.61 -1.13 16 27 C 0.26 2.22 15.33 -22.48 -0.34 1.87 16 28 N -0.43 -4.71 18.53 41.82 0.78 -3.94 16 29 C -0.03 -0.16 9.75 -39.20 -0.38 -0.54 16 30 C -0.15 -1.00 9.97 -39.50 -0.39 -1.39 16 31 C -0.04 -0.55 9.24 -39.18 -0.36 -0.91 16 32 H 0.03 0.67 6.68 -51.93 -0.35 0.32 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 36 H 0.06 0.84 6.90 -51.93 -0.36 0.48 16 37 H 0.07 0.89 5.21 -51.93 -0.27 0.61 16 38 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 39 H 0.16 1.88 4.04 -52.49 -0.21 1.67 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.08 0.41 7.58 -51.93 -0.39 0.02 16 43 H 0.08 0.54 7.60 -51.93 -0.39 0.15 16 44 H 0.14 0.60 6.28 -52.48 -0.33 0.27 16 45 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 47 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.13 1.90 7.79 -52.49 -0.41 1.49 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -33.01 404.68 -8.91 -41.92 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.79 Total: 0.78 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -5.01 Total: -7.53 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.92 Total: -40.58 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.11 Total: -16.21 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.01 -8.91 -41.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.031 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds