Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38283 * 119.94520 * 2 1 4 4 C 1.38265 * 120.15517 * 180.30152 * 3 2 1 5 5 C 1.38313 * 120.04347 * 359.45011 * 4 3 2 6 6 F 1.35097 * 120.05795 * 180.25749 * 5 4 3 7 7 C 1.39042 * 119.88893 * 0.27022 * 5 4 3 8 8 N 1.40077 * 120.07843 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00133 * 145.33091 * 8 7 5 10 10 O 1.21581 * 119.99852 * 4.43143 * 9 8 7 11 11 N 1.34770 * 119.99626 * 184.43370 * 9 8 7 12 12 C 1.46497 * 120.00614 * 0.02562 * 11 9 8 13 13 C 1.50702 * 109.47618 * 89.99514 * 12 11 9 14 14 H 1.08003 * 119.99727 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99960 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00193 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99866 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46819 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47190 * 119.99718 * 17 15 13 20 20 H 1.48499 * 109.47262 * 240.00136 * 17 15 13 21 21 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 22 22 C 1.53009 * 109.46792 * 90.00464 * 21 11 9 23 23 N 1.46898 * 109.47071 * 180.02562 * 22 21 11 24 24 C 1.47020 * 110.99794 * 293.63295 * 23 22 21 25 25 C 1.53100 * 109.25458 * 177.60791 * 24 23 22 26 26 O 1.43008 * 109.25852 * 56.84976 * 25 24 23 27 27 C 1.43021 * 113.73975 * 301.32804 * 26 25 24 28 28 C 1.47009 * 110.99885 * 169.99965 * 23 22 21 29 29 C 1.38145 * 119.94560 * 179.75086 * 2 1 3 30 30 H 1.08997 * 109.47153 * 270.25031 * 1 2 3 31 31 H 1.09002 * 109.46890 * 30.25513 * 1 2 3 32 32 H 1.09004 * 109.47077 * 150.25253 * 1 2 3 33 33 H 1.08002 * 119.92085 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.98237 * 179.72483 * 4 3 2 35 35 H 0.97000 * 119.99815 * 325.33238 * 8 7 5 36 36 H 1.09002 * 109.47483 * 210.00142 * 12 11 9 37 37 H 1.09006 * 109.46706 * 329.99452 * 12 11 9 38 38 H 0.97001 * 119.99868 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47004 * 209.99726 * 21 11 9 40 40 H 1.08992 * 109.47412 * 330.00516 * 21 11 9 41 41 H 1.09002 * 109.46464 * 299.99861 * 22 21 11 42 42 H 1.08992 * 109.47099 * 59.99861 * 22 21 11 43 43 H 1.08995 * 109.50395 * 297.54548 * 24 23 22 44 44 H 1.09001 * 109.50396 * 57.67402 * 24 23 22 45 45 H 1.08996 * 109.50818 * 296.91313 * 25 24 23 46 46 H 1.09003 * 109.53415 * 176.80616 * 25 24 23 47 47 H 1.08996 * 109.50265 * 298.73496 * 27 26 25 48 48 H 1.09003 * 109.54129 * 178.63145 * 27 26 25 49 49 H 1.08998 * 109.50875 * 302.32176 * 28 23 22 50 50 H 1.08998 * 109.50800 * 62.41310 * 28 23 22 51 51 H 1.07999 * 120.02416 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5799 1.2033 -0.0063 5 6 4.2768 0.0086 -0.0011 6 9 5.6278 0.0132 -0.0020 7 6 3.5846 -1.1973 0.0047 8 7 4.2864 -2.4096 0.0105 9 6 3.7933 -3.4705 0.6796 10 8 2.7017 -3.4006 1.2105 11 7 4.5102 -4.6089 0.7602 12 6 5.8257 -4.6929 0.1211 13 6 6.8871 -4.2528 1.0961 14 1 6.6096 -3.9419 2.0925 15 6 8.2125 -4.2470 0.7162 16 7 8.5504 -4.6250 -0.4972 17 14 9.5282 -3.7021 1.9251 18 1 8.8921 -3.3293 3.2143 19 1 10.4855 -4.8148 2.1497 20 1 10.2529 -2.5294 1.3728 21 6 3.9744 -5.7620 1.4880 22 6 3.1675 -6.6400 0.5293 23 7 2.6297 -7.7959 1.2591 24 6 3.7113 -8.6840 1.7099 25 6 3.1125 -9.8404 2.5149 26 8 2.1489 -10.5258 1.7106 27 6 1.0809 -9.6908 1.2548 28 6 1.6591 -8.5329 0.4370 29 6 2.1966 -1.1970 0.0052 30 1 -0.3633 0.0045 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6551 2.1323 0.0004 34 1 4.1162 2.1407 -0.0108 35 1 5.1273 -2.4855 -0.4670 36 1 6.0166 -5.7219 -0.1838 37 1 5.8460 -4.0448 -0.7552 38 1 9.4829 -4.6213 -0.7643 39 1 4.7972 -6.3418 1.9063 40 1 3.3280 -5.4147 2.2938 41 1 2.3448 -6.0601 0.1109 42 1 3.8139 -6.9873 -0.2766 43 1 4.2420 -9.0796 0.8439 44 1 4.4043 -8.1239 2.3377 45 1 2.6277 -9.4488 3.4091 46 1 3.9041 -10.5321 2.8032 47 1 0.5371 -9.2949 2.1124 48 1 0.4029 -10.2738 0.6315 49 1 0.8541 -7.8626 0.1357 50 1 2.1569 -8.9255 -0.4496 51 1 1.6561 -2.1320 0.0097 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080164411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = -80.743424 kcal Electronic energy + Delta-G solvation = -33794.454198 eV Core-core repulsion = 29222.652145 eV Total energy + Delta-G solvation = -4571.802053 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.51903 -40.25283 -39.53571 -38.55582 -36.30392 -34.92832 -34.53331 -32.68754 -32.03881 -31.26404 -30.23185 -29.00307 -27.34934 -26.53141 -25.83359 -24.05217 -23.36045 -22.97616 -22.03116 -21.05339 -20.33857 -19.32682 -17.90135 -17.11119 -16.80095 -16.67948 -16.35126 -16.16019 -16.01164 -15.35195 -15.21463 -15.09090 -14.96523 -14.76457 -14.53808 -14.26589 -13.97866 -13.78104 -13.68613 -13.52454 -13.37071 -13.06764 -12.68613 -12.58650 -12.31778 -12.08695 -11.99225 -11.77159 -11.71911 -11.48552 -11.45973 -11.39697 -11.20515 -10.99600 -10.86943 -10.71543 -10.43163 -10.21451 -10.03148 -9.85014 -9.70326 -9.45605 -8.65736 -8.47740 -8.38059 -8.01885 -7.61787 -6.26884 -4.35171 1.30880 1.43578 3.08116 3.18648 3.27681 3.32926 3.52696 3.72731 3.85467 3.99804 4.26580 4.46984 4.57789 4.83478 4.86876 4.94359 4.97960 5.00392 5.07026 5.10246 5.23463 5.26772 5.34517 5.40658 5.50609 5.53202 5.58705 5.61004 5.63791 5.73839 5.80145 5.82645 5.90600 5.92724 5.95986 6.14304 6.19759 6.25246 6.39051 6.46874 6.55009 6.62709 6.79390 6.94596 6.96397 7.02177 7.08010 7.19785 7.28372 7.62293 7.68525 7.92940 8.40911 8.74455 9.09606 9.34776 10.79574 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.006568 B = 0.003549 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4262.068941 B = 7888.721471 C =11683.574877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.122 4.122 4 C -0.134 4.134 5 C 0.059 3.941 6 F -0.134 7.134 7 C 0.156 3.844 8 N -0.679 5.679 9 C 0.711 3.289 10 O -0.599 6.599 11 N -0.607 5.607 12 C 0.239 3.761 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.144 3.856 22 C 0.043 3.957 23 N -0.532 5.532 24 C 0.012 3.988 25 C 0.065 3.935 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.019 3.981 29 C -0.100 4.100 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.420 0.580 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.041 0.959 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 0.689 -0.244 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.153 4.153 5 C 0.036 3.964 6 F -0.113 7.113 7 C 0.058 3.942 8 N -0.328 5.328 9 C 0.413 3.587 10 O -0.480 6.480 11 N -0.340 5.340 12 C 0.119 3.881 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C 0.019 3.981 22 C -0.086 4.086 23 N -0.258 5.258 24 C -0.117 4.117 25 C -0.012 4.012 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.110 4.110 29 C -0.121 4.121 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.059 0.941 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.608 0.555 0.397 14.624 hybrid contribution 2.281 0.308 -0.394 2.335 sum -12.327 0.863 0.003 12.358 Atomic orbital electron populations 1.20731 0.90862 1.02540 1.02385 1.19825 0.96315 0.92481 0.99791 1.20740 0.92898 0.97750 1.02724 1.20883 0.94809 0.96286 1.03352 1.17567 0.77234 0.93317 1.08236 1.91523 1.28307 1.97254 1.94172 1.17627 0.91706 0.84044 1.00869 1.42769 1.27080 1.08757 1.54180 1.15741 0.83664 0.80380 0.78888 1.90813 1.21039 1.83155 1.52977 1.47352 1.20166 1.10597 1.55878 1.19383 0.77354 0.98542 0.92796 1.21517 0.91146 1.45557 0.99678 0.91880 1.24935 0.98631 0.94676 0.95386 1.69919 1.18288 1.46810 1.17809 0.86439 0.81362 0.78432 0.81301 1.19605 1.20806 1.20705 1.21077 0.97404 0.85819 0.93771 1.22541 0.98788 0.91390 0.95845 1.62138 1.15269 1.08208 1.40201 1.22889 0.94014 0.94662 1.00087 1.22680 0.91729 0.93723 0.93101 1.87957 1.36629 1.36297 1.69892 1.22642 0.89242 0.91317 0.97988 1.22757 0.96716 0.96253 0.95255 1.21172 0.91550 0.99352 1.00017 0.91113 0.91680 0.91479 0.85513 0.84806 0.73958 0.94251 0.95325 0.92455 0.90300 0.89889 0.90530 0.94419 0.93739 0.88850 0.92235 0.88498 0.92276 0.88716 0.89704 0.94069 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.08 -1.09 5.88 -104.64 -0.62 -1.71 16 3 C -0.12 -1.47 9.69 -39.55 -0.38 -1.85 16 4 C -0.13 -1.81 10.02 -39.54 -0.40 -2.20 16 5 C 0.06 0.99 7.31 -39.26 -0.29 0.70 16 6 F -0.13 -2.49 16.96 2.25 0.04 -2.46 16 7 C 0.16 2.79 6.31 -83.58 -0.53 2.27 16 8 N -0.68 -13.42 5.11 -14.17 -0.07 -13.49 16 9 C 0.71 14.81 8.12 -86.92 -0.71 14.10 16 10 O -0.60 -13.00 13.34 5.29 0.07 -12.93 16 11 N -0.61 -12.39 2.46 -180.80 -0.44 -12.83 16 12 C 0.24 5.48 4.96 -5.19 -0.03 5.45 16 13 C -0.54 -13.81 9.39 -34.44 -0.32 -14.13 16 14 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.14 2.57 5.34 -4.03 -0.02 2.55 16 22 C 0.04 0.68 5.28 -3.82 -0.02 0.66 16 23 N -0.53 -7.36 4.73 -234.31 -1.11 -8.47 16 24 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 25 C 0.06 0.74 7.01 37.21 0.26 1.00 16 26 O -0.39 -4.91 10.83 -35.23 -0.38 -5.29 16 27 C 0.07 0.69 7.01 37.21 0.26 0.96 16 28 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 29 C -0.10 -1.63 8.35 -39.41 -0.33 -1.95 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.42 8.56 6.36 -40.82 -0.26 8.30 16 36 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.03 0.68 6.30 -51.93 -0.33 0.35 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.08 1.40 6.45 -51.93 -0.33 1.07 16 40 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 41 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 42 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.21 6.38 -51.93 -0.33 0.88 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 50 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.15 2.59 6.20 -52.49 -0.33 2.27 16 LS Contribution 415.61 15.07 6.26 6.26 Total: -1.00 -29.31 415.61 -10.64 -39.95 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.83 Total: 9.82 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.89 Total: 7.11 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.89 Total: -58.10 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.31 Total: -18.22 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.31 -10.64 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080164411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.790 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds