Wall clock time and date at job start Tue Mar 31 2020 07:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38283 * 119.94520 * 2 1 4 4 C 1.38265 * 120.15517 * 180.30152 * 3 2 1 5 5 C 1.38313 * 120.04347 * 359.45011 * 4 3 2 6 6 F 1.35097 * 120.05795 * 180.25749 * 5 4 3 7 7 C 1.39042 * 119.88893 * 0.27022 * 5 4 3 8 8 N 1.40077 * 120.07843 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00133 * 145.33091 * 8 7 5 10 10 O 1.21581 * 119.99852 * 4.43143 * 9 8 7 11 11 N 1.34770 * 119.99626 * 184.43370 * 9 8 7 12 12 C 1.46497 * 120.00614 * 0.02562 * 11 9 8 13 13 C 1.50702 * 109.47618 * 89.99514 * 12 11 9 14 14 H 1.08003 * 119.99727 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99960 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00193 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99866 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46819 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47190 * 119.99718 * 17 15 13 20 20 H 1.48499 * 109.47262 * 240.00136 * 17 15 13 21 21 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 22 22 C 1.53009 * 109.46792 * 90.00464 * 21 11 9 23 23 N 1.46898 * 109.47071 * 180.02562 * 22 21 11 24 24 C 1.47020 * 110.99794 * 293.63295 * 23 22 21 25 25 C 1.53100 * 109.25458 * 177.60791 * 24 23 22 26 26 O 1.43008 * 109.25852 * 56.84976 * 25 24 23 27 27 C 1.43021 * 113.73975 * 301.32804 * 26 25 24 28 28 C 1.47009 * 110.99885 * 169.99965 * 23 22 21 29 29 C 1.38145 * 119.94560 * 179.75086 * 2 1 3 30 30 H 1.08997 * 109.47153 * 270.25031 * 1 2 3 31 31 H 1.09002 * 109.46890 * 30.25513 * 1 2 3 32 32 H 1.09004 * 109.47077 * 150.25253 * 1 2 3 33 33 H 1.08002 * 119.92085 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.98237 * 179.72483 * 4 3 2 35 35 H 0.97000 * 119.99815 * 325.33238 * 8 7 5 36 36 H 1.09002 * 109.47483 * 210.00142 * 12 11 9 37 37 H 1.09006 * 109.46706 * 329.99452 * 12 11 9 38 38 H 0.97001 * 119.99868 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47004 * 209.99726 * 21 11 9 40 40 H 1.08992 * 109.47412 * 330.00516 * 21 11 9 41 41 H 1.09002 * 109.46464 * 299.99861 * 22 21 11 42 42 H 1.08992 * 109.47099 * 59.99861 * 22 21 11 43 43 H 1.08995 * 109.50395 * 297.54548 * 24 23 22 44 44 H 1.09001 * 109.50396 * 57.67402 * 24 23 22 45 45 H 1.08996 * 109.50818 * 296.91313 * 25 24 23 46 46 H 1.09003 * 109.53415 * 176.80616 * 25 24 23 47 47 H 1.08996 * 109.50265 * 298.73496 * 27 26 25 48 48 H 1.09003 * 109.54129 * 178.63145 * 27 26 25 49 49 H 1.08998 * 109.50875 * 302.32176 * 28 23 22 50 50 H 1.08998 * 109.50800 * 62.41310 * 28 23 22 51 51 H 1.07999 * 120.02416 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5799 1.2033 -0.0063 5 6 4.2768 0.0086 -0.0011 6 9 5.6278 0.0132 -0.0020 7 6 3.5846 -1.1973 0.0047 8 7 4.2864 -2.4096 0.0105 9 6 3.7933 -3.4705 0.6796 10 8 2.7017 -3.4006 1.2105 11 7 4.5102 -4.6089 0.7602 12 6 5.8257 -4.6929 0.1211 13 6 6.8871 -4.2528 1.0961 14 1 6.6096 -3.9419 2.0925 15 6 8.2125 -4.2470 0.7162 16 7 8.5504 -4.6250 -0.4972 17 14 9.5282 -3.7021 1.9251 18 1 8.8921 -3.3293 3.2143 19 1 10.4855 -4.8148 2.1497 20 1 10.2529 -2.5294 1.3728 21 6 3.9744 -5.7620 1.4880 22 6 3.1675 -6.6400 0.5293 23 7 2.6297 -7.7959 1.2591 24 6 3.7113 -8.6840 1.7099 25 6 3.1125 -9.8404 2.5149 26 8 2.1489 -10.5258 1.7106 27 6 1.0809 -9.6908 1.2548 28 6 1.6591 -8.5329 0.4370 29 6 2.1966 -1.1970 0.0052 30 1 -0.3633 0.0045 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6551 2.1323 0.0004 34 1 4.1162 2.1407 -0.0108 35 1 5.1273 -2.4855 -0.4670 36 1 6.0166 -5.7219 -0.1838 37 1 5.8460 -4.0448 -0.7552 38 1 9.4829 -4.6213 -0.7643 39 1 4.7972 -6.3418 1.9063 40 1 3.3280 -5.4147 2.2938 41 1 2.3448 -6.0601 0.1109 42 1 3.8139 -6.9873 -0.2766 43 1 4.2420 -9.0796 0.8439 44 1 4.4043 -8.1239 2.3377 45 1 2.6277 -9.4488 3.4091 46 1 3.9041 -10.5321 2.8032 47 1 0.5371 -9.2949 2.1124 48 1 0.4029 -10.2738 0.6315 49 1 0.8541 -7.8626 0.1357 50 1 2.1569 -8.9255 -0.4496 51 1 1.6561 -2.1320 0.0097 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080164411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:13 Heat of formation + Delta-G solvation = -97.914928 kcal Electronic energy + Delta-G solvation = -33795.198811 eV Core-core repulsion = 29222.652145 eV Total energy + Delta-G solvation = -4572.546665 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -49.87021 -41.75949 -40.56554 -39.80811 -37.58718 -36.47547 -35.93418 -34.62156 -33.09337 -32.22815 -31.52469 -30.36728 -29.07073 -27.54429 -27.08465 -25.13098 -25.02422 -24.36388 -23.25749 -22.25425 -21.38138 -20.87235 -19.39736 -18.73626 -18.40230 -18.06903 -17.61418 -17.30932 -17.12835 -16.74011 -16.56983 -16.34725 -16.26257 -16.07981 -15.98173 -15.42222 -15.16494 -15.10152 -14.94700 -14.65330 -14.50453 -14.38708 -14.24921 -14.14890 -13.68069 -13.41671 -13.17929 -12.98676 -12.93750 -12.82880 -12.76030 -12.60520 -12.51273 -12.34379 -12.31717 -12.21504 -11.89993 -11.76855 -11.46763 -11.37175 -11.04452 -10.72233 -10.67096 -9.76076 -9.59652 -9.45786 -9.01420 -8.28392 -6.43489 0.12851 0.28032 1.34488 1.38183 1.47574 1.59463 2.03621 2.33990 2.61197 2.68568 2.91965 3.02179 3.04710 3.28290 3.79009 3.81435 3.89092 3.94455 3.97979 4.06668 4.18687 4.26906 4.29887 4.32827 4.37234 4.43233 4.47526 4.57423 4.68027 4.69955 4.73762 4.80701 4.85761 4.87992 4.90494 4.93952 4.94844 4.99821 5.05400 5.13308 5.21140 5.32458 5.45562 5.50053 5.62983 5.67862 5.78873 5.90217 5.94210 6.00786 6.03831 6.16138 6.57688 6.84453 7.28475 7.47042 8.76817 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.006568 B = 0.003549 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4262.068941 B = 7888.721471 C =11683.574877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.125 4.125 5 C 0.031 3.969 6 F -0.152 7.152 7 C 0.121 3.879 8 N -0.683 5.683 9 C 0.707 3.293 10 O -0.611 6.611 11 N -0.609 5.609 12 C 0.257 3.743 13 C -0.547 4.547 14 H 0.048 0.952 15 C 0.027 3.973 16 N -0.915 5.915 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.273 1.273 20 H -0.279 1.279 21 C 0.147 3.853 22 C 0.060 3.940 23 N -0.537 5.537 24 C 0.011 3.989 25 C 0.068 3.932 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.017 3.983 29 C -0.116 4.116 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.413 0.587 36 H 0.028 0.972 37 H 0.020 0.980 38 H 0.269 0.731 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.034 0.966 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.094 0.906 50 H 0.035 0.965 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 2.092 0.281 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.144 4.144 5 C 0.009 3.991 6 F -0.131 7.131 7 C 0.025 3.975 8 N -0.330 5.330 9 C 0.409 3.591 10 O -0.493 6.493 11 N -0.343 5.343 12 C 0.136 3.864 13 C -0.586 4.586 14 H 0.067 0.933 15 C -0.174 4.174 16 N -0.554 5.554 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.198 1.198 20 H -0.205 1.205 21 C 0.024 3.976 22 C -0.069 4.069 23 N -0.262 5.262 24 C -0.117 4.117 25 C -0.009 4.009 26 O -0.322 6.322 27 C -0.010 4.010 28 C -0.111 4.111 29 C -0.136 4.136 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.251 0.749 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.133 0.867 47 H 0.083 0.917 48 H 0.138 0.862 49 H 0.112 0.888 50 H 0.054 0.946 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.264 1.965 0.925 16.408 hybrid contribution 2.671 -0.041 -0.574 2.733 sum -13.593 1.924 0.352 13.733 Atomic orbital electron populations 1.20822 0.88223 1.04030 1.03325 1.20261 0.98197 0.91686 0.97689 1.21256 0.92310 0.99006 0.99811 1.21291 0.95651 0.95957 1.01470 1.17952 0.76691 0.94282 1.10169 1.91467 1.29705 1.97375 1.94561 1.17977 0.92563 0.83662 1.03330 1.42745 1.26875 1.09417 1.54000 1.15849 0.83620 0.80607 0.78980 1.90786 1.21395 1.83430 1.53665 1.47329 1.19440 1.11464 1.56048 1.19000 0.78022 0.97258 0.92119 1.21628 0.92081 1.45494 0.99352 0.93346 1.25583 1.00348 0.94711 0.96768 1.69992 1.18840 1.47569 1.19023 0.85567 0.79115 0.78224 0.79161 1.19951 1.19821 1.20454 1.21112 0.97335 0.85316 0.93885 1.22245 0.97893 0.91820 0.94932 1.62155 1.15668 1.08194 1.40226 1.22930 0.93870 0.95087 0.99858 1.22738 0.92114 0.93324 0.92689 1.87942 1.37146 1.37026 1.70082 1.22786 0.88980 0.90922 0.98351 1.22867 0.96361 0.96800 0.95093 1.21154 0.90884 1.00169 1.01417 0.90281 0.88636 0.91632 0.80966 0.81946 0.74857 0.95430 0.96262 0.92172 0.90471 0.90684 0.91212 0.95478 0.94803 0.89301 0.91611 0.86730 0.91723 0.86245 0.88755 0.94636 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.01 71.24 0.71 -1.08 16 2 C -0.08 -1.86 5.88 -19.88 -0.12 -1.98 16 3 C -0.11 -2.14 9.69 22.29 0.22 -1.92 16 4 C -0.12 -3.07 10.02 22.29 0.22 -2.85 16 5 C 0.03 1.05 7.31 22.48 0.16 1.21 16 6 F -0.15 -5.84 16.96 44.97 0.76 -5.08 16 7 C 0.12 4.50 6.31 38.15 0.24 4.74 16 8 N -0.68 -28.53 5.11 -317.00 -1.62 -30.15 16 9 C 0.71 30.97 8.12 179.06 1.45 32.43 16 10 O -0.61 -27.58 13.34 -3.97 -0.05 -27.64 16 11 N -0.61 -26.20 2.46 -844.18 -2.07 -28.27 16 12 C 0.26 12.36 4.96 85.63 0.43 12.78 16 13 C -0.55 -28.87 9.39 25.60 0.24 -28.63 16 14 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 15 C 0.03 1.43 5.46 84.65 0.46 1.89 16 16 N -0.92 -50.33 13.29 21.45 0.28 -50.04 16 17 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.15 5.52 5.34 86.38 0.46 5.98 16 22 C 0.06 1.97 5.28 86.31 0.46 2.42 16 23 N -0.54 -14.96 4.73 -895.22 -4.23 -19.19 16 24 C 0.01 0.28 5.44 86.31 0.47 0.75 16 25 C 0.07 1.48 7.01 72.02 0.50 1.99 16 26 O -0.40 -9.62 10.83 -148.98 -1.61 -11.23 16 27 C 0.07 1.31 7.01 72.01 0.50 1.81 16 28 C 0.02 0.39 5.64 86.31 0.49 0.88 16 29 C -0.12 -3.78 8.35 22.38 0.19 -3.60 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 32 H 0.06 1.13 8.08 -2.38 -0.02 1.11 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.41 18.03 6.36 -92.71 -0.59 17.44 16 36 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 37 H 0.02 0.97 6.30 -2.38 -0.02 0.96 16 38 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.08 2.88 6.45 -2.39 -0.02 2.87 16 40 H 0.07 2.93 7.42 -2.39 -0.02 2.91 16 41 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 42 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 43 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 2.37 6.38 -2.39 -0.02 2.35 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 50 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.13 4.74 6.20 -2.91 -0.02 4.73 16 Total: -1.00 -65.13 415.61 0.93 -64.20 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.36 Total: 35.77 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 7.09 Total: 26.83 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -7.64 Total: -127.66 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.67 Total: -38.87 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.76 Total: -5.08 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.13 0.93 -64.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080164411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.719 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds