Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48494 * 109.47305 * 270.00543 * 3 2 1 5 5 H 1.48501 * 109.46630 * 30.00543 * 3 2 1 6 6 H 1.48499 * 109.46856 * 150.00429 * 3 2 1 7 7 C 1.39945 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99486 * 191.34363 * 7 2 1 9 9 C 1.41429 * 119.99857 * 11.33723 * 7 2 1 10 10 C 1.40783 * 120.17698 * 208.93600 * 9 7 2 11 11 C 1.37713 * 120.04382 * 180.02562 * 10 9 7 12 12 C 1.38379 * 120.41019 * 359.69773 * 11 10 9 13 13 C 1.39885 * 120.35372 * 0.56216 * 12 11 10 14 14 C 1.47884 * 120.02229 * 179.74307 * 13 12 11 15 15 O 1.21546 * 120.00182 * 179.72666 * 14 13 12 16 16 N 1.34776 * 120.00422 * 359.71760 * 14 13 12 17 17 C 1.46496 * 120.00709 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47651 * 185.27728 * 17 16 14 19 19 H 1.09005 * 109.47473 * 304.64352 * 18 17 16 20 20 C 1.50708 * 109.46873 * 64.64067 * 18 17 16 21 21 C 1.38670 * 120.41773 * 260.25689 * 20 18 17 22 22 C 1.38631 * 118.41746 * 180.22049 * 21 20 18 23 23 C 1.38225 * 119.16352 * 359.48399 * 22 21 20 24 24 N 1.31853 * 120.75975 * 0.30029 * 23 22 21 25 25 C 1.31882 * 121.73191 * 359.97417 * 24 23 22 26 26 N 1.46895 * 109.47500 * 184.63951 * 18 17 16 27 27 C 1.48532 * 110.99794 * 58.66627 * 26 18 17 28 28 C 1.54939 * 103.22733 * 159.72137 * 27 26 18 29 29 C 1.54598 * 102.92309 * 322.58631 * 28 27 26 30 30 C 1.47899 * 111.00386 * 176.06381 * 26 18 17 31 31 C 1.39032 * 119.95080 * 359.46149 * 13 12 11 32 32 H 0.96992 * 119.99735 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.98166 * 0.02811 * 10 9 7 34 34 H 1.07997 * 119.80045 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.82239 * 180.27871 * 12 11 10 36 36 H 0.97005 * 119.99763 * 359.97438 * 16 14 13 37 37 H 1.08999 * 109.46844 * 65.27263 * 17 16 14 38 38 H 1.09003 * 109.46711 * 305.28209 * 17 16 14 39 39 H 1.07999 * 120.79459 * 359.97438 * 21 20 18 40 40 H 1.08006 * 120.41507 * 179.76019 * 22 21 20 41 41 H 1.07998 * 119.62156 * 180.27830 * 23 22 21 42 42 H 1.07995 * 119.62200 * 180.02562 * 25 24 23 43 43 H 1.08996 * 110.67005 * 278.15652 * 27 26 18 44 44 H 1.08993 * 110.66923 * 41.29071 * 27 26 18 45 45 H 1.09002 * 110.72705 * 204.22784 * 28 27 26 46 46 H 1.09009 * 110.72418 * 80.94429 * 28 27 26 47 47 H 1.08995 * 110.30919 * 263.04318 * 29 28 27 48 48 H 1.09001 * 110.30556 * 140.86979 * 29 28 27 49 49 H 1.08999 * 109.91918 * 333.50997 * 30 26 18 50 50 H 1.08999 * 109.91902 * 94.80304 * 30 26 18 51 51 H 1.08004 * 120.20186 * 180.23048 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0081 -1.2120 -0.0005 8 1 3.0722 -1.2211 0.1834 9 6 1.3216 -2.4247 -0.2419 10 6 1.7912 -3.6275 0.3192 11 6 1.1209 -4.8069 0.0819 12 6 -0.0194 -4.8190 -0.7019 13 6 -0.4979 -3.6347 -1.2721 14 6 -1.7140 -3.6571 -2.1132 15 8 -2.1323 -2.6270 -2.6045 16 7 -2.3586 -4.8197 -2.3353 17 6 -3.5630 -4.8420 -3.1689 18 6 -4.1685 -6.2469 -3.1529 19 1 -3.4158 -6.9706 -3.4660 20 6 -4.6336 -6.5776 -1.7581 21 6 -3.8536 -7.3668 -0.9265 22 6 -4.3237 -7.6489 0.3468 23 6 -5.5406 -7.1289 0.7461 24 7 -6.2536 -6.3781 -0.0702 25 6 -5.8404 -6.0937 -1.2899 26 7 -5.3107 -6.2985 -4.0751 27 6 -4.8955 -5.9461 -5.4570 28 6 -6.0249 -6.5473 -6.3308 29 6 -6.3604 -7.8684 -5.6012 30 6 -5.8644 -7.6675 -4.1572 31 6 0.1674 -2.4356 -1.0428 32 1 -0.4849 0.8400 0.0004 33 1 2.6777 -3.6253 0.9360 34 1 1.4849 -5.7273 0.5139 35 1 -0.5401 -5.7486 -0.8780 36 1 -2.0245 -5.6419 -1.9437 37 1 -3.3019 -4.5705 -4.1918 38 1 -4.2888 -4.1290 -2.7778 39 1 -2.9044 -7.7559 -1.2641 40 1 -3.7444 -8.2636 1.0199 41 1 -5.9118 -7.3402 1.7380 42 1 -6.4517 -5.4749 -1.9300 43 1 -4.8482 -4.8641 -5.5804 44 1 -3.9366 -6.4042 -5.6992 45 1 -5.6672 -6.7448 -7.3413 46 1 -6.8915 -5.8863 -6.3495 47 1 -5.8365 -8.7022 -6.0686 48 1 -7.4362 -8.0432 -5.6108 49 1 -5.0877 -8.3966 -3.9266 50 1 -6.6960 -7.7741 -3.4607 51 1 -0.2006 -1.5182 -1.4780 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084364214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = 23.929745 kcal Electronic energy + Delta-G solvation = -32479.310165 eV Core-core repulsion = 28342.816306 eV Total energy + Delta-G solvation = -4136.493859 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.74089 -39.25706 -38.88470 -37.05881 -35.38340 -33.75114 -33.00430 -32.26707 -30.65615 -30.27102 -29.46588 -29.18721 -27.50884 -25.32389 -24.32618 -23.71705 -22.50874 -21.97140 -21.04779 -20.88738 -20.53484 -19.53787 -17.79164 -17.26898 -16.88915 -16.40711 -16.16933 -15.93086 -15.38622 -15.10860 -15.03289 -14.75366 -14.51021 -14.24716 -13.93658 -13.75183 -13.66692 -13.22407 -13.18992 -13.09265 -12.87183 -12.65829 -12.59700 -12.50742 -12.22473 -11.70144 -11.66006 -11.64606 -11.35227 -11.28200 -11.16910 -11.10734 -10.87474 -10.73970 -10.49909 -10.02779 -9.89973 -9.71695 -9.54126 -9.26767 -9.08875 -9.03773 -8.77829 -8.70119 -7.65282 -7.50053 -6.74956 -4.44161 1.00877 1.19042 2.17862 2.80289 3.08358 3.11301 3.13764 3.26975 3.70629 3.84475 3.92116 3.94047 4.21972 4.32516 4.44028 4.56751 4.65599 4.68690 4.71396 4.82688 4.88054 4.90731 4.97582 5.13283 5.19431 5.34235 5.39790 5.47786 5.52926 5.56771 5.59735 5.67460 5.71519 5.74864 5.79856 5.86574 5.93286 5.99918 6.04547 6.08853 6.21618 6.50758 6.59125 6.66065 6.68120 6.82741 6.97041 6.98879 7.20966 7.35943 7.66227 7.72200 7.89268 7.92324 8.05868 8.17175 8.49578 8.80669 8.81677 8.91929 10.19447 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.002428 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.039217 B =11531.697491 C =12538.450500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.098 3.902 10 C -0.206 4.206 11 C -0.101 4.101 12 C -0.212 4.212 13 C -0.130 4.130 14 C 0.566 3.434 15 O -0.543 6.543 16 N -0.736 5.736 17 C 0.132 3.868 18 C 0.113 3.887 19 H 0.059 0.941 20 C -0.130 4.130 21 C -0.072 4.072 22 C -0.170 4.170 23 C 0.096 3.904 24 N -0.486 5.486 25 C 0.128 3.872 26 N -0.506 5.506 27 C 0.031 3.969 28 C -0.122 4.122 29 C -0.131 4.131 30 C 0.039 3.961 31 C -0.085 4.085 32 H 0.284 0.716 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.395 0.605 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.079 0.921 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 -16.657 -7.318 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.119 4.119 12 C -0.232 4.232 13 C -0.133 4.133 14 C 0.356 3.644 15 O -0.420 6.420 16 N -0.390 5.390 17 C 0.007 3.993 18 C 0.004 3.996 19 H 0.077 0.923 20 C -0.133 4.133 21 C -0.098 4.098 22 C -0.190 4.190 23 C -0.061 4.061 24 N -0.194 5.194 25 C -0.029 4.029 26 N -0.231 5.231 27 C -0.097 4.097 28 C -0.160 4.160 29 C -0.169 4.169 30 C -0.089 4.089 31 C -0.105 4.105 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.097 0.903 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.741 -15.032 -7.169 20.969 hybrid contribution 1.998 -0.706 -0.145 2.124 sum -10.743 -15.738 -7.314 20.411 Atomic orbital electron populations 1.69759 1.07410 1.29619 1.34806 1.25953 0.94875 1.01451 0.92462 0.86225 0.80217 0.80434 0.79346 1.19226 1.20210 1.18649 1.19575 0.96146 0.90329 1.43044 0.90154 1.17622 0.91441 0.92538 0.88821 1.21158 1.02896 0.93328 1.05242 1.20432 0.95815 0.96710 0.98952 1.20318 1.00479 0.95085 1.07358 1.19475 0.96021 0.95646 1.02175 1.18812 0.83634 0.82216 0.79725 1.90705 1.67573 1.32610 1.51123 1.45851 1.28389 1.10999 1.53799 1.21187 0.87539 0.94721 0.95816 1.20828 0.91775 0.97310 0.89731 0.92338 1.20637 0.96906 0.99486 0.96245 1.21447 0.98921 0.95654 0.93802 1.22087 0.97945 1.02061 0.96878 1.22789 0.91446 0.92859 0.99014 1.67763 1.34656 1.12838 1.04174 1.22680 0.93338 0.95495 0.91417 1.64690 1.27683 1.23873 1.06832 1.23326 0.97078 1.01857 0.87416 1.22476 0.98841 0.96481 0.98237 1.22402 1.01730 0.97976 0.94805 1.22835 0.99580 0.89053 0.97397 1.21682 0.95995 0.95868 0.96949 0.90502 0.88547 0.88908 0.89537 0.76926 0.91332 0.90461 0.85158 0.84727 0.82943 0.82135 0.89191 0.93309 0.90959 0.90488 0.91563 0.90928 0.93734 0.90271 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.20 10.88 55.55 0.60 -20.60 16 2 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 3 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.13 9.06 -37.73 -0.34 -12.48 16 8 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 9 C 0.10 2.59 5.54 -106.87 -0.59 2.00 16 10 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.21 -4.39 9.55 -38.91 -0.37 -4.76 16 13 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 14 C 0.57 12.36 7.77 -12.31 -0.10 12.26 16 15 O -0.54 -13.65 16.33 5.32 0.09 -13.56 16 16 N -0.74 -12.04 5.26 -61.25 -0.32 -12.36 16 17 C 0.13 1.83 5.00 -4.05 -0.02 1.81 16 18 C 0.11 1.20 1.49 -68.87 -0.10 1.10 16 19 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 20 C -0.13 -1.48 3.91 -104.48 -0.41 -1.89 16 21 C -0.07 -0.75 9.08 -39.28 -0.36 -1.11 16 22 C -0.17 -1.72 10.11 -39.44 -0.40 -2.12 16 23 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 24 N -0.49 -6.48 10.36 -13.25 -0.14 -6.61 16 25 C 0.13 1.61 10.23 -17.55 -0.18 1.43 16 26 N -0.51 -4.80 4.40 -223.89 -0.99 -5.79 16 27 C 0.03 0.26 5.35 -1.90 -0.01 0.25 16 28 C -0.12 -0.85 7.06 -24.87 -0.18 -1.02 16 29 C -0.13 -0.88 6.93 -25.37 -0.18 -1.05 16 30 C 0.04 0.32 5.82 -2.75 -0.02 0.31 16 31 C -0.08 -2.26 8.20 -38.44 -0.32 -2.58 16 32 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 33 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.09 1.46 6.38 -52.49 -0.33 1.13 16 36 H 0.40 5.65 5.64 -40.82 -0.23 5.42 16 37 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 38 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 40 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.16 1.97 7.72 -52.49 -0.41 1.56 16 43 H 0.09 0.82 7.55 -51.93 -0.39 0.43 16 44 H 0.05 0.41 8.01 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.04 0.37 7.67 -51.93 -0.40 -0.03 16 50 H 0.08 0.69 8.05 -51.93 -0.42 0.28 16 51 H 0.14 3.91 5.84 -52.48 -0.31 3.61 16 LS Contribution 413.85 15.07 6.24 6.24 Total: -1.00 -31.00 413.85 -12.22 -43.22 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.43 Total: 12.19 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -5.24 Total: -16.66 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.84 Total: -45.36 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.00 -12.22 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084364214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.150 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds