Wall clock time and date at job start Tue Mar 31 2020 07:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48495 * 109.47049 * 269.99341 * 3 2 1 5 5 H 1.48500 * 109.47075 * 29.99575 * 3 2 1 6 6 H 1.48504 * 109.47273 * 149.99407 * 3 2 1 7 7 C 1.39942 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99932 * 193.38546 * 7 2 1 9 9 C 1.41432 * 119.99530 * 13.38696 * 7 2 1 10 10 C 1.40784 * 120.17464 * 204.79446 * 9 7 2 11 11 C 1.37716 * 120.04230 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40557 * 359.70099 * 11 10 9 13 13 C 1.39872 * 120.36260 * 0.56250 * 12 11 10 14 14 C 1.47884 * 120.02652 * 179.74293 * 13 12 11 15 15 O 1.21551 * 120.00212 * 179.71885 * 14 13 12 16 16 N 1.34772 * 120.00158 * 359.71602 * 14 13 12 17 17 C 1.46500 * 120.00207 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.47213 * 295.00307 * 18 17 16 20 20 C 1.50706 * 109.47480 * 175.00363 * 18 17 16 21 21 C 1.38670 * 120.42150 * 137.31494 * 20 18 17 22 22 C 1.38627 * 118.42024 * 179.75146 * 21 20 18 23 23 C 1.38235 * 119.16053 * 0.25319 * 22 21 20 24 24 N 1.31853 * 120.76132 * 0.02676 * 23 22 21 25 25 C 1.31886 * 121.72665 * 359.96994 * 24 23 22 26 26 N 1.46903 * 109.47237 * 55.00489 * 18 17 16 27 27 C 1.48529 * 110.99844 * 63.08982 * 26 18 17 28 28 C 1.54938 * 103.22351 * 159.72605 * 27 26 18 29 29 C 1.54598 * 102.92151 * 322.58702 * 28 27 26 30 30 C 1.47893 * 111.00161 * 180.49273 * 26 18 17 31 31 C 1.39038 * 119.94865 * 359.45809 * 13 12 11 32 32 H 0.96996 * 120.00507 * 0.02562 * 1 2 3 33 33 H 1.07999 * 119.98149 * 0.02920 * 10 9 7 34 34 H 1.07998 * 119.79674 * 179.97438 * 11 10 9 35 35 H 1.08005 * 119.81447 * 180.27717 * 12 11 10 36 36 H 0.97003 * 119.99949 * 0.02562 * 16 14 13 37 37 H 1.09002 * 109.46930 * 60.00568 * 17 16 14 38 38 H 1.08994 * 109.47251 * 300.00694 * 17 16 14 39 39 H 1.08001 * 120.79066 * 0.03051 * 21 20 18 40 40 H 1.08001 * 120.41833 * 180.27905 * 22 21 20 41 41 H 1.07993 * 119.61772 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.61642 * 180.02562 * 25 24 23 43 43 H 1.08996 * 110.66960 * 278.15545 * 27 26 18 44 44 H 1.08999 * 110.66949 * 41.29380 * 27 26 18 45 45 H 1.09005 * 110.72474 * 204.22923 * 28 27 26 46 46 H 1.08994 * 110.72750 * 80.94200 * 28 27 26 47 47 H 1.09004 * 110.30697 * 263.04463 * 29 28 27 48 48 H 1.09000 * 110.31051 * 140.87733 * 29 28 27 49 49 H 1.09002 * 109.91815 * 333.50125 * 30 26 18 50 50 H 1.09004 * 109.92287 * 94.79862 * 30 26 18 51 51 H 1.08001 * 120.20211 * 180.23137 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4395 2.6527 0.6999 6 1 3.5397 1.4403 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0660 -1.2244 0.2171 9 6 1.3296 -2.4202 -0.2825 10 6 1.8317 -3.6435 0.2006 11 6 1.1692 -4.8185 -0.0771 12 6 0.0053 -4.8063 -0.8254 13 6 -0.5056 -3.6012 -1.3184 14 6 -1.7470 -3.5974 -2.1220 15 8 -2.1934 -2.5493 -2.5459 16 7 -2.3834 -4.7560 -2.3845 17 6 -3.6129 -4.7523 -3.1811 18 6 -4.1288 -6.1850 -3.3294 19 1 -3.4133 -6.7710 -3.9061 20 6 -5.4563 -6.1697 -4.0427 21 6 -5.7335 -7.1027 -5.0305 22 6 -6.9696 -7.0538 -5.6560 23 6 -7.8765 -6.0803 -5.2806 24 7 -7.5764 -5.2056 -4.3408 25 6 -6.4105 -5.2222 -3.7245 26 7 -4.2947 -6.7859 -1.9992 27 6 -5.3194 -6.0563 -1.2095 28 6 -5.7311 -7.0850 -0.1266 29 6 -5.7044 -8.4259 -0.8955 30 6 -4.7820 -8.1784 -2.1036 31 6 0.1513 -2.4061 -1.0473 32 1 -0.4851 0.8400 -0.0004 33 1 2.7369 -3.6606 0.7893 34 1 1.5582 -5.7548 0.2951 35 1 -0.5089 -5.7330 -1.0337 36 1 -2.0274 -5.5924 -2.0459 37 1 -3.4057 -4.3366 -4.1672 38 1 -4.3675 -4.1446 -2.6818 39 1 -5.0053 -7.8524 -5.3028 40 1 -7.2212 -7.7675 -6.4265 41 1 -8.8417 -6.0357 -5.7628 42 1 -6.2008 -4.4896 -2.9592 43 1 -4.8895 -5.1660 -0.7506 44 1 -6.1726 -5.7941 -1.8352 45 1 -6.7338 -6.8734 0.2451 46 1 -5.0098 -7.0946 0.6905 47 1 -6.7071 -8.6887 -1.2327 48 1 -5.2975 -9.2159 -0.2644 49 1 -5.3412 -8.3076 -3.0303 50 1 -3.9398 -8.8698 -2.0755 51 1 -0.2416 -1.4729 -1.4228 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084364216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:53 Heat of formation + Delta-G solvation = 32.828468 kcal Electronic energy + Delta-G solvation = -32584.889551 eV Core-core repulsion = 28448.781569 eV Total energy + Delta-G solvation = -4136.107982 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.25379 -39.24659 -38.67025 -36.95867 -35.19965 -33.73541 -33.22903 -32.42097 -30.59303 -30.18264 -29.36436 -29.13422 -27.69049 -25.29649 -24.58114 -23.85257 -22.52523 -21.99280 -20.98964 -20.87864 -20.25924 -19.44106 -17.78975 -17.38237 -16.86346 -16.65995 -16.31100 -15.86829 -15.43857 -15.23215 -14.94929 -14.62270 -14.39881 -14.26740 -14.15796 -13.82802 -13.54978 -13.40415 -13.16866 -13.05798 -12.75777 -12.65567 -12.53036 -12.39579 -12.18591 -11.71012 -11.57812 -11.53369 -11.29426 -11.23215 -11.11406 -11.02789 -10.79106 -10.67576 -10.43985 -10.11383 -9.95160 -9.78386 -9.65750 -9.34795 -9.21062 -8.95185 -8.70459 -8.53478 -7.57187 -7.44599 -6.71185 -4.38104 0.71416 0.91072 2.27459 2.86465 3.10410 3.13417 3.19148 3.38655 3.60523 3.82363 3.93387 3.96356 4.10762 4.31737 4.41126 4.47765 4.51459 4.63109 4.66669 4.70772 4.75333 4.90832 5.01599 5.08201 5.20509 5.30228 5.41683 5.43614 5.56111 5.62173 5.64067 5.64854 5.69234 5.73905 5.78548 5.87452 5.92060 5.95203 6.01392 6.15671 6.32100 6.35310 6.61629 6.67813 6.76623 6.96422 7.03947 7.08355 7.28337 7.43949 7.63800 7.76680 7.82677 8.00142 8.19560 8.27241 8.56997 8.85752 8.89154 9.04485 10.21206 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.002281 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.785776 B =12272.220307 C =13257.341694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.095 3.905 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.211 4.211 13 C -0.128 4.128 14 C 0.563 3.437 15 O -0.550 6.550 16 N -0.725 5.725 17 C 0.134 3.866 18 C 0.107 3.893 19 H 0.100 0.900 20 C -0.165 4.165 21 C -0.062 4.062 22 C -0.175 4.175 23 C 0.098 3.902 24 N -0.482 5.482 25 C 0.112 3.888 26 N -0.494 5.494 27 C 0.014 3.986 28 C -0.122 4.122 29 C -0.129 4.129 30 C 0.029 3.971 31 C -0.092 4.092 32 H 0.283 0.717 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.407 0.593 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.048 0.952 50 H 0.081 0.919 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 -16.737 -7.273 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.093 3.907 10 C -0.230 4.230 11 C -0.120 4.120 12 C -0.231 4.231 13 C -0.131 4.131 14 C 0.353 3.647 15 O -0.428 6.428 16 N -0.379 5.379 17 C 0.009 3.991 18 C -0.003 4.003 19 H 0.118 0.882 20 C -0.169 4.169 21 C -0.089 4.089 22 C -0.194 4.194 23 C -0.059 4.059 24 N -0.190 5.190 25 C -0.045 4.045 26 N -0.216 5.216 27 C -0.113 4.113 28 C -0.160 4.160 29 C -0.167 4.167 30 C -0.099 4.099 31 C -0.112 4.112 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.243 0.757 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.099 0.901 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.620 -15.157 -7.072 22.214 hybrid contribution 0.249 -0.481 -0.514 0.747 sum -14.371 -15.638 -7.586 22.553 Atomic orbital electron populations 1.69763 1.07421 1.29515 1.34585 1.25960 0.94846 1.01474 0.92483 0.86245 0.80258 0.80489 0.79341 1.19243 1.20243 1.18655 1.19592 0.96677 0.90547 1.41983 0.90224 1.17620 0.91576 0.92459 0.89086 1.21114 1.02585 0.92997 1.06280 1.20434 0.95727 0.96623 0.99187 1.20391 0.99749 0.95030 1.07950 1.19484 0.95544 0.95372 1.02743 1.18847 0.84139 0.82599 0.79096 1.90698 1.67637 1.31526 1.52964 1.45750 1.26003 1.10442 1.55709 1.21208 0.87811 0.93545 0.96534 1.21089 0.92414 0.97016 0.89768 0.88152 1.21420 0.99105 0.97670 0.98693 1.21518 0.96729 0.97102 0.93503 1.22147 0.94878 1.00745 1.01679 1.22836 0.99376 0.90461 0.93220 1.67773 1.19681 1.23976 1.07608 1.22868 0.88624 0.96231 0.96792 1.65158 1.42854 1.01929 1.11694 1.23688 0.94138 0.98253 0.95232 1.22453 1.01585 0.93911 0.98054 1.22361 0.99153 0.98388 0.96794 1.22940 0.98245 0.90776 0.97896 1.21778 0.96002 0.96414 0.97011 0.90550 0.88722 0.88981 0.89023 0.75651 0.91262 0.91781 0.84759 0.84706 0.82763 0.82282 0.89196 0.92288 0.91194 0.90393 0.91968 0.90954 0.93324 0.90102 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.10 10.72 55.55 0.60 -20.51 16 2 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 3 Si 0.91 19.04 29.58 -169.99 -5.03 14.01 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.16 9.07 -37.73 -0.34 -12.50 16 8 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.10 2.53 5.58 -106.87 -0.60 1.94 16 10 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 11 C -0.10 -2.18 10.01 -39.72 -0.40 -2.57 16 12 C -0.21 -4.45 9.55 -38.92 -0.37 -4.83 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 14 C 0.56 12.29 7.77 -12.31 -0.10 12.20 16 15 O -0.55 -13.83 16.33 5.32 0.09 -13.74 16 16 N -0.72 -11.86 5.34 -61.24 -0.33 -12.19 16 17 C 0.13 1.82 4.56 -4.04 -0.02 1.81 16 18 C 0.11 1.08 2.32 -68.86 -0.16 0.92 16 19 H 0.10 0.93 8.02 -51.93 -0.42 0.51 16 20 C -0.16 -1.58 3.78 -104.48 -0.39 -1.97 16 21 C -0.06 -0.49 8.31 -39.28 -0.33 -0.81 16 22 C -0.17 -1.26 10.11 -39.44 -0.40 -1.66 16 23 C 0.10 0.85 11.18 -17.54 -0.20 0.66 16 24 N -0.48 -5.46 10.36 -13.25 -0.14 -5.60 16 25 C 0.11 1.23 8.00 -17.55 -0.14 1.08 16 26 N -0.49 -5.02 4.74 -223.89 -1.06 -6.08 16 27 C 0.01 0.15 4.98 -1.90 -0.01 0.14 16 28 C -0.12 -1.12 7.06 -24.87 -0.18 -1.29 16 29 C -0.13 -1.04 6.93 -25.37 -0.18 -1.21 16 30 C 0.03 0.25 6.46 -2.76 -0.02 0.23 16 31 C -0.09 -2.47 8.24 -38.44 -0.32 -2.79 16 32 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.63 6.38 -52.48 -0.33 1.29 16 36 H 0.41 6.06 6.16 -40.82 -0.25 5.81 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.92 5.61 -51.93 -0.29 0.63 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.16 1.78 5.38 -52.48 -0.28 1.50 16 43 H 0.09 1.11 7.80 -51.93 -0.40 0.71 16 44 H 0.06 0.62 3.98 -51.93 -0.21 0.41 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.39 5.42 -51.93 -0.28 0.11 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.14 4.05 5.59 -52.49 -0.29 3.76 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -30.98 402.83 -11.98 -42.96 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -6.96 Total: 13.08 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -5.22 Total: -18.00 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.93 Total: -44.37 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.98 -11.98 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084364216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.790 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds