Wall clock time and date at job start Tue Mar 31 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48495 * 109.47049 * 269.99341 * 3 2 1 5 5 H 1.48500 * 109.47075 * 29.99575 * 3 2 1 6 6 H 1.48504 * 109.47273 * 149.99407 * 3 2 1 7 7 C 1.39942 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99932 * 193.38546 * 7 2 1 9 9 C 1.41432 * 119.99530 * 13.38696 * 7 2 1 10 10 C 1.40784 * 120.17464 * 204.79446 * 9 7 2 11 11 C 1.37716 * 120.04230 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40557 * 359.70099 * 11 10 9 13 13 C 1.39872 * 120.36260 * 0.56250 * 12 11 10 14 14 C 1.47884 * 120.02652 * 179.74293 * 13 12 11 15 15 O 1.21551 * 120.00212 * 179.71885 * 14 13 12 16 16 N 1.34772 * 120.00158 * 359.71602 * 14 13 12 17 17 C 1.46500 * 120.00207 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.47213 * 295.00307 * 18 17 16 20 20 C 1.50706 * 109.47480 * 175.00363 * 18 17 16 21 21 C 1.38670 * 120.42150 * 137.31494 * 20 18 17 22 22 C 1.38627 * 118.42024 * 179.75146 * 21 20 18 23 23 C 1.38235 * 119.16053 * 0.25319 * 22 21 20 24 24 N 1.31853 * 120.76132 * 0.02676 * 23 22 21 25 25 C 1.31886 * 121.72665 * 359.96994 * 24 23 22 26 26 N 1.46903 * 109.47237 * 55.00489 * 18 17 16 27 27 C 1.48529 * 110.99844 * 63.08982 * 26 18 17 28 28 C 1.54938 * 103.22351 * 159.72605 * 27 26 18 29 29 C 1.54598 * 102.92151 * 322.58702 * 28 27 26 30 30 C 1.47893 * 111.00161 * 180.49273 * 26 18 17 31 31 C 1.39038 * 119.94865 * 359.45809 * 13 12 11 32 32 H 0.96996 * 120.00507 * 0.02562 * 1 2 3 33 33 H 1.07999 * 119.98149 * 0.02920 * 10 9 7 34 34 H 1.07998 * 119.79674 * 179.97438 * 11 10 9 35 35 H 1.08005 * 119.81447 * 180.27717 * 12 11 10 36 36 H 0.97003 * 119.99949 * 0.02562 * 16 14 13 37 37 H 1.09002 * 109.46930 * 60.00568 * 17 16 14 38 38 H 1.08994 * 109.47251 * 300.00694 * 17 16 14 39 39 H 1.08001 * 120.79066 * 0.03051 * 21 20 18 40 40 H 1.08001 * 120.41833 * 180.27905 * 22 21 20 41 41 H 1.07993 * 119.61772 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.61642 * 180.02562 * 25 24 23 43 43 H 1.08996 * 110.66960 * 278.15545 * 27 26 18 44 44 H 1.08999 * 110.66949 * 41.29380 * 27 26 18 45 45 H 1.09005 * 110.72474 * 204.22923 * 28 27 26 46 46 H 1.08994 * 110.72750 * 80.94200 * 28 27 26 47 47 H 1.09004 * 110.30697 * 263.04463 * 29 28 27 48 48 H 1.09000 * 110.31051 * 140.87733 * 29 28 27 49 49 H 1.09002 * 109.91815 * 333.50125 * 30 26 18 50 50 H 1.09004 * 109.92287 * 94.79862 * 30 26 18 51 51 H 1.08001 * 120.20211 * 180.23137 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4395 2.6527 0.6999 6 1 3.5397 1.4403 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0660 -1.2244 0.2171 9 6 1.3296 -2.4202 -0.2825 10 6 1.8317 -3.6435 0.2006 11 6 1.1692 -4.8185 -0.0771 12 6 0.0053 -4.8063 -0.8254 13 6 -0.5056 -3.6012 -1.3184 14 6 -1.7470 -3.5974 -2.1220 15 8 -2.1934 -2.5493 -2.5459 16 7 -2.3834 -4.7560 -2.3845 17 6 -3.6129 -4.7523 -3.1811 18 6 -4.1288 -6.1850 -3.3294 19 1 -3.4133 -6.7710 -3.9061 20 6 -5.4563 -6.1697 -4.0427 21 6 -5.7335 -7.1027 -5.0305 22 6 -6.9696 -7.0538 -5.6560 23 6 -7.8765 -6.0803 -5.2806 24 7 -7.5764 -5.2056 -4.3408 25 6 -6.4105 -5.2222 -3.7245 26 7 -4.2947 -6.7859 -1.9992 27 6 -5.3194 -6.0563 -1.2095 28 6 -5.7311 -7.0850 -0.1266 29 6 -5.7044 -8.4259 -0.8955 30 6 -4.7820 -8.1784 -2.1036 31 6 0.1513 -2.4061 -1.0473 32 1 -0.4851 0.8400 -0.0004 33 1 2.7369 -3.6606 0.7893 34 1 1.5582 -5.7548 0.2951 35 1 -0.5089 -5.7330 -1.0337 36 1 -2.0274 -5.5924 -2.0459 37 1 -3.4057 -4.3366 -4.1672 38 1 -4.3675 -4.1446 -2.6818 39 1 -5.0053 -7.8524 -5.3028 40 1 -7.2212 -7.7675 -6.4265 41 1 -8.8417 -6.0357 -5.7628 42 1 -6.2008 -4.4896 -2.9592 43 1 -4.8895 -5.1660 -0.7506 44 1 -6.1726 -5.7941 -1.8352 45 1 -6.7338 -6.8734 0.2451 46 1 -5.0098 -7.0946 0.6905 47 1 -6.7071 -8.6887 -1.2327 48 1 -5.2975 -9.2159 -0.2644 49 1 -5.3412 -8.3076 -3.0303 50 1 -3.9398 -8.8698 -2.0755 51 1 -0.2416 -1.4729 -1.4228 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084364216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:51 Heat of formation + Delta-G solvation = 13.312606 kcal Electronic energy + Delta-G solvation = -32585.735822 eV Core-core repulsion = 28448.781569 eV Total energy + Delta-G solvation = -4136.954253 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.02814 -40.76186 -39.60874 -38.75308 -36.35712 -35.58121 -34.37451 -33.20366 -31.99483 -31.27534 -31.21702 -29.88961 -28.80163 -27.15450 -25.53979 -24.72511 -23.64461 -23.18207 -22.71008 -21.67041 -21.20465 -21.06511 -19.50331 -18.19517 -17.97459 -17.65052 -17.36591 -17.00630 -16.86640 -16.49361 -16.27244 -16.24797 -15.66046 -15.31821 -15.06451 -14.95330 -14.90392 -14.63800 -14.33190 -14.21575 -14.06468 -13.94856 -13.74787 -13.44192 -13.39067 -12.91477 -12.87137 -12.79595 -12.54386 -12.47014 -12.28448 -12.18467 -12.11364 -12.00336 -11.85427 -11.49073 -11.46364 -11.09686 -10.81391 -10.73924 -10.48730 -10.09763 -10.01622 -9.46544 -9.42058 -9.33400 -8.60140 -6.37443 0.03690 0.26796 0.42018 1.04077 1.36596 1.48807 1.51230 2.13705 2.20282 2.25158 2.75084 2.82847 2.95545 3.37536 3.50952 3.65726 3.73087 3.73833 3.89747 3.94397 3.98091 4.06876 4.11521 4.15162 4.27451 4.34691 4.45582 4.54647 4.58345 4.63308 4.64954 4.72409 4.77195 4.77649 4.89350 4.93999 4.94560 5.05946 5.11055 5.11271 5.16456 5.19511 5.23404 5.31389 5.36262 5.47151 5.55690 5.69504 5.83795 5.90630 5.94017 5.96500 6.10747 6.31693 6.56490 6.76162 6.90562 6.95489 6.98128 7.37770 8.33950 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.002281 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.785776 B =12272.220307 C =13257.341694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.025 3.975 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.062 3.938 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.190 4.190 13 C -0.139 4.139 14 C 0.558 3.442 15 O -0.594 6.594 16 N -0.697 5.697 17 C 0.133 3.867 18 C 0.121 3.879 19 H 0.121 0.879 20 C -0.168 4.168 21 C -0.059 4.059 22 C -0.164 4.164 23 C 0.087 3.913 24 N -0.515 5.515 25 C 0.092 3.908 26 N -0.503 5.503 27 C 0.014 3.986 28 C -0.122 4.122 29 C -0.124 4.124 30 C 0.030 3.970 31 C -0.131 4.131 32 H 0.284 0.716 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.417 0.583 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.093 0.907 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 -20.779 -8.259 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.060 3.940 10 C -0.234 4.234 11 C -0.116 4.116 12 C -0.209 4.209 13 C -0.142 4.142 14 C 0.348 3.652 15 O -0.476 6.476 16 N -0.350 5.350 17 C 0.009 3.991 18 C 0.011 3.989 19 H 0.139 0.861 20 C -0.173 4.173 21 C -0.086 4.086 22 C -0.183 4.183 23 C -0.070 4.070 24 N -0.224 5.224 25 C -0.064 4.064 26 N -0.225 5.225 27 C -0.113 4.113 28 C -0.160 4.160 29 C -0.162 4.162 30 C -0.097 4.097 31 C -0.152 4.152 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.181 0.819 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.158 0.842 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.111 0.889 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.645 -19.271 -8.051 25.508 hybrid contribution 0.134 0.556 -0.263 0.629 sum -14.510 -18.715 -8.314 25.098 Atomic orbital electron populations 1.69888 1.09129 1.30290 1.36296 1.26874 0.95502 1.04981 0.91536 0.85157 0.79157 0.75777 0.79344 1.19092 1.19543 1.17360 1.19873 0.97021 0.91638 1.43910 0.89862 1.17975 0.92119 0.93967 0.89913 1.21420 1.03097 0.93004 1.05861 1.20920 0.95116 0.97536 0.98040 1.20858 0.99220 0.95415 1.05452 1.19781 0.96059 0.95531 1.02805 1.18748 0.84052 0.83400 0.78970 1.90673 1.68682 1.33447 1.54788 1.45499 1.26001 1.09031 1.54468 1.21340 0.86091 0.96432 0.95268 1.20928 0.93170 0.94457 0.90332 0.86112 1.21294 0.98202 0.98226 0.99544 1.21859 0.97608 0.96824 0.92291 1.22514 0.93954 1.00316 1.01507 1.23339 1.00798 0.90266 0.92580 1.67718 1.20092 1.25594 1.08994 1.22693 0.89481 0.96919 0.97318 1.65141 1.42946 1.02944 1.11484 1.23593 0.94181 0.97783 0.95790 1.22442 1.01577 0.94441 0.97534 1.22350 0.99595 0.97624 0.96614 1.23005 0.98849 0.89426 0.98398 1.21580 0.97684 0.96492 0.99438 0.90513 0.87363 0.84370 0.84694 0.74366 0.91966 0.93110 0.81939 0.81257 0.80556 0.84163 0.92017 0.92303 0.90755 0.91142 0.91368 0.89895 0.92444 0.88890 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.47 10.72 21.83 0.23 -47.24 16 2 C 0.02 1.33 5.23 85.26 0.45 1.77 16 3 Si 0.99 40.57 29.58 68.60 2.03 42.60 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -27.41 9.07 23.47 0.21 -27.20 16 8 H 0.08 4.34 7.88 -2.91 -0.02 4.32 16 9 C 0.06 3.46 5.58 -21.32 -0.12 3.34 16 10 C -0.21 -10.11 9.78 22.77 0.22 -9.89 16 11 C -0.10 -3.93 10.01 22.18 0.22 -3.71 16 12 C -0.19 -7.57 9.55 22.70 0.22 -7.35 16 13 C -0.14 -6.68 5.87 -20.14 -0.12 -6.80 16 14 C 0.56 25.14 7.77 86.80 0.67 25.82 16 15 O -0.59 -31.78 16.33 -3.88 -0.06 -31.84 16 16 N -0.70 -22.52 5.34 -465.95 -2.49 -25.01 16 17 C 0.13 3.65 4.56 86.38 0.39 4.05 16 18 C 0.12 2.24 2.32 44.17 0.10 2.34 16 19 H 0.12 1.80 8.02 -2.39 -0.02 1.78 16 20 C -0.17 -2.96 3.78 -19.77 -0.07 -3.03 16 21 C -0.06 -0.73 8.31 22.47 0.19 -0.54 16 22 C -0.16 -1.77 10.11 22.36 0.23 -1.54 16 23 C 0.09 1.34 11.18 84.69 0.95 2.28 16 24 N -0.52 -11.57 10.36 -195.84 -2.03 -13.60 16 25 C 0.09 2.05 8.00 84.67 0.68 2.73 16 26 N -0.50 -9.27 4.74 -862.26 -4.09 -13.36 16 27 C 0.01 0.30 4.98 86.65 0.43 0.73 16 28 C -0.12 -2.12 7.06 31.80 0.22 -1.90 16 29 C -0.12 -1.67 6.93 31.47 0.22 -1.45 16 30 C 0.03 0.41 6.46 86.45 0.56 0.97 16 31 C -0.13 -7.46 8.24 23.01 0.19 -7.27 16 32 H 0.28 15.06 8.30 -92.71 -0.77 14.29 16 33 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.14 4.17 6.38 -2.91 -0.02 4.15 16 36 H 0.42 11.47 6.16 -92.71 -0.57 10.90 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.56 5.61 -2.39 -0.01 1.55 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.14 3.47 5.38 -2.91 -0.02 3.46 16 43 H 0.06 1.62 7.80 -2.39 -0.02 1.60 16 44 H 0.06 1.26 3.98 -2.39 -0.01 1.26 16 45 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 0.70 5.42 -2.39 -0.01 0.68 16 50 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.10 6.57 5.59 -2.91 -0.02 6.55 16 Total: -1.00 -73.97 402.83 -0.17 -74.13 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: 0.40 Total: 40.96 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 5.84 Total: -26.65 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -8.37 Total: -99.20 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.06 Total: -31.84 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -73.97 -0.17 -74.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084364216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.444 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds