Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46502 * 119.99937 * 85.00032 * 3 2 1 5 5 C 1.50698 * 109.46865 * 85.00033 * 4 3 2 6 6 H 1.07995 * 120.00536 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99364 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99760 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.46674 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46975 * 119.99665 * 9 7 5 12 12 H 1.48494 * 109.46954 * 240.00241 * 9 7 5 13 13 S 1.65596 * 119.99829 * 265.00303 * 3 2 1 14 14 O 1.42102 * 106.39988 * 203.53886 * 13 3 2 15 15 O 1.42093 * 106.40335 * 336.45537 * 13 3 2 16 16 C 1.76205 * 107.21728 * 89.99913 * 13 3 2 17 17 C 1.38466 * 120.01709 * 89.99869 * 16 13 3 18 18 F 1.35097 * 120.02257 * 0.02562 * 17 16 13 19 19 C 1.38441 * 119.95695 * 179.97438 * 17 16 13 20 20 C 1.38230 * 119.99604 * 359.97438 * 19 17 16 21 21 C 1.38207 * 120.03477 * 0.02562 * 20 19 17 22 22 C 1.38258 * 120.01468 * 269.72018 * 16 13 3 23 23 Br 1.89101 * 119.99920 * 359.97438 * 22 16 13 24 24 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 29 29 H 1.08999 * 109.46889 * 205.00670 * 4 3 2 30 30 H 1.09003 * 109.46675 * 325.00051 * 4 3 2 31 31 H 0.97005 * 120.00132 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.00290 * 179.97438 * 19 17 16 33 33 H 1.08004 * 119.98160 * 180.02562 * 20 19 17 34 34 H 1.07996 * 119.98030 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1724 1.1117 1.3836 7 6 3.8529 2.3614 3.0844 8 7 3.0280 3.1863 3.6914 9 14 5.5100 1.9654 3.8506 10 1 6.2458 1.0172 2.9760 11 1 6.2977 3.2153 3.9997 12 1 5.3033 1.3483 5.1853 13 16 2.4121 2.1202 -1.4287 14 8 3.3284 3.1570 -1.1049 15 8 2.7095 1.0800 -2.3498 16 6 0.9554 2.9118 -2.0253 17 6 0.6796 4.2194 -1.6626 18 9 1.5275 4.8891 -0.8516 19 6 -0.4651 4.8404 -2.1325 20 6 -1.3314 4.1552 -2.9636 21 6 -1.0559 2.8501 -3.3254 22 6 0.0901 2.2296 -2.8604 23 35 0.4703 0.4467 -3.3631 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0921 3.1803 1.0756 30 1 1.3617 1.8097 1.9453 31 1 3.2799 3.5888 4.5373 32 1 -0.6811 5.8601 -1.8498 33 1 -2.2242 4.6400 -3.3303 34 1 -1.7336 2.3154 -3.9744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084774720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -63.908778 kcal Electronic energy + Delta-G solvation = -23882.793645 eV Core-core repulsion = 20097.821898 eV Total energy + Delta-G solvation = -3784.971747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.97982 -39.17593 -36.66006 -36.05433 -35.16589 -32.75076 -32.58468 -31.07615 -29.97246 -29.41634 -26.59250 -23.65709 -23.09487 -22.79215 -21.68722 -18.77706 -17.79778 -17.09140 -16.85046 -16.70700 -16.23046 -15.59895 -15.36877 -15.12514 -14.37234 -14.24194 -13.87620 -13.51696 -13.36250 -13.20047 -12.91797 -12.61170 -12.12459 -12.04596 -11.97137 -11.74546 -11.63513 -11.34728 -10.99568 -10.96172 -10.71582 -10.66979 -10.43189 -10.31443 -9.96595 -9.72370 -9.53487 -9.37028 -8.85905 -8.41761 -8.07461 -6.03333 -4.06942 0.35404 0.75409 0.94684 1.32248 2.98444 3.33757 3.41402 3.46537 3.63221 4.01138 4.27668 4.32123 4.47439 4.48776 4.82025 5.08280 5.18763 5.31944 5.44237 5.45195 5.57109 5.67742 5.74967 5.78904 5.83941 6.02773 6.30969 6.42822 6.61789 6.65623 7.24706 7.40802 7.61452 7.94059 8.22513 8.95479 9.57898 11.05520 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.005049 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.627259 B = 5544.151076 C = 6430.456589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.116 3.884 3 N -0.971 5.971 4 C 0.253 3.747 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.665 3.335 14 O -0.928 6.928 15 O -0.947 6.947 16 C -0.698 4.698 17 C 0.211 3.789 18 F -0.098 7.098 19 C -0.166 4.166 20 C -0.040 4.040 21 C -0.131 4.131 22 C 0.017 3.983 23 Br 0.009 6.991 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 -2.162 -14.937 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.010 4.010 3 N -0.811 5.811 4 C 0.132 3.868 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.749 3.251 14 O -0.918 6.918 15 O -0.937 6.937 16 C -0.781 4.781 17 C 0.189 3.811 18 F -0.075 7.075 19 C -0.186 4.186 20 C -0.059 4.059 21 C -0.151 4.151 22 C -0.064 4.064 23 Br 0.096 6.904 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.003 -2.672 -15.352 19.670 hybrid contribution 0.044 0.776 0.850 1.152 sum -11.958 -1.896 -14.503 18.892 Atomic orbital electron populations 1.22344 0.97388 1.01699 1.02008 1.21244 0.93100 0.82767 1.03896 1.57449 1.80775 1.21035 1.21851 1.19159 0.97691 0.91390 0.78589 1.21495 1.01887 1.27647 1.05457 0.91933 1.24924 0.97359 0.94806 0.96889 1.69932 1.36069 1.30287 1.17177 0.86464 0.83895 0.78363 0.78880 1.19568 1.20795 1.21002 1.03101 0.74132 0.74360 0.73553 1.93644 1.57176 1.57810 1.83169 1.93731 1.82573 1.55068 1.62343 1.31557 1.26813 1.05568 1.14193 1.17071 0.87931 0.88262 0.87838 1.91759 1.68333 1.78958 1.68484 1.21417 0.94277 1.02108 1.00770 1.21251 0.97953 0.93317 0.93349 1.21277 0.96415 0.95715 1.01728 1.21407 0.95413 0.93318 0.96273 1.96906 1.94370 1.08975 1.90182 0.93470 0.91933 0.92040 0.90072 0.89308 0.94214 0.94471 0.92766 0.83286 0.83586 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 10.12 37.16 0.38 -2.19 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.01 16 3 N -0.97 -20.53 2.77 -115.66 -0.32 -20.85 16 4 C 0.25 6.40 5.10 -5.19 -0.03 6.38 16 5 C -0.53 -14.78 9.38 -34.44 -0.32 -15.10 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 S 2.67 55.43 5.39 -107.50 -0.58 54.85 16 14 O -0.93 -22.94 15.17 -57.17 -0.87 -23.81 16 15 O -0.95 -19.05 12.75 -57.17 -0.73 -19.78 16 16 C -0.70 -12.01 5.98 -39.49 -0.24 -12.24 16 17 C 0.21 3.48 7.21 -39.42 -0.28 3.19 16 18 F -0.10 -1.92 15.21 2.25 0.03 -1.88 16 19 C -0.17 -1.97 10.03 -39.51 -0.40 -2.36 16 20 C -0.04 -0.37 10.04 -39.60 -0.40 -0.77 16 21 C -0.13 -1.39 9.79 -39.55 -0.39 -1.78 16 22 C 0.02 0.24 5.45 -39.53 -0.22 0.03 16 23 Br 0.01 0.12 27.86 -68.01 -1.89 -1.77 16 24 H 0.05 0.66 5.44 -51.93 -0.28 0.38 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.34 6.73 -51.93 -0.35 0.99 16 28 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 29 H 0.04 1.08 7.47 -51.93 -0.39 0.69 16 30 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -33.04 320.69 -9.34 -42.38 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.52 Total: -4.19 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.01 Total: -21.16 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.42 Total: -46.38 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -1.60 Total: -43.59 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.03 Total: -1.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 55.43 SS G_CDS: -0.58 Total: 54.85 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -1.89 Total: -1.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.04 -9.34 -42.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084774720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.530 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds