Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46502 * 119.99937 * 85.00032 * 3 2 1 5 5 C 1.50698 * 109.46865 * 85.00033 * 4 3 2 6 6 H 1.07995 * 120.00536 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99364 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99760 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.46674 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46975 * 119.99665 * 9 7 5 12 12 H 1.48494 * 109.46954 * 240.00241 * 9 7 5 13 13 S 1.65596 * 119.99829 * 265.00303 * 3 2 1 14 14 O 1.42102 * 106.39988 * 203.53886 * 13 3 2 15 15 O 1.42093 * 106.40335 * 336.45537 * 13 3 2 16 16 C 1.76205 * 107.21728 * 89.99913 * 13 3 2 17 17 C 1.38466 * 120.01709 * 89.99869 * 16 13 3 18 18 F 1.35097 * 120.02257 * 0.02562 * 17 16 13 19 19 C 1.38441 * 119.95695 * 179.97438 * 17 16 13 20 20 C 1.38230 * 119.99604 * 359.97438 * 19 17 16 21 21 C 1.38207 * 120.03477 * 0.02562 * 20 19 17 22 22 C 1.38258 * 120.01468 * 269.72018 * 16 13 3 23 23 Br 1.89101 * 119.99920 * 359.97438 * 22 16 13 24 24 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 29 29 H 1.08999 * 109.46889 * 205.00670 * 4 3 2 30 30 H 1.09003 * 109.46675 * 325.00051 * 4 3 2 31 31 H 0.97005 * 120.00132 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.00290 * 179.97438 * 19 17 16 33 33 H 1.08004 * 119.98160 * 180.02562 * 20 19 17 34 34 H 1.07996 * 119.98030 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1724 1.1117 1.3836 7 6 3.8529 2.3614 3.0844 8 7 3.0280 3.1863 3.6914 9 14 5.5100 1.9654 3.8506 10 1 6.2458 1.0172 2.9760 11 1 6.2977 3.2153 3.9997 12 1 5.3033 1.3483 5.1853 13 16 2.4121 2.1202 -1.4287 14 8 3.3284 3.1570 -1.1049 15 8 2.7095 1.0800 -2.3498 16 6 0.9554 2.9118 -2.0253 17 6 0.6796 4.2194 -1.6626 18 9 1.5275 4.8891 -0.8516 19 6 -0.4651 4.8404 -2.1325 20 6 -1.3314 4.1552 -2.9636 21 6 -1.0559 2.8501 -3.3254 22 6 0.0901 2.2296 -2.8604 23 35 0.4703 0.4467 -3.3631 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0921 3.1803 1.0756 30 1 1.3617 1.8097 1.9453 31 1 3.2799 3.5888 4.5373 32 1 -0.6811 5.8601 -1.8498 33 1 -2.2242 4.6400 -3.3303 34 1 -1.7336 2.3154 -3.9744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084774720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -86.075017 kcal Electronic energy + Delta-G solvation = -23883.754846 eV Core-core repulsion = 20097.821898 eV Total energy + Delta-G solvation = -3785.932948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29288 -40.18272 -38.31754 -37.73550 -36.86490 -34.73456 -33.71899 -32.13501 -31.55902 -30.44000 -28.53627 -24.98731 -24.70220 -23.84106 -23.26223 -20.18163 -19.30165 -18.60617 -18.42083 -18.02952 -17.93151 -17.04858 -16.92021 -16.28486 -16.13818 -15.47322 -15.26878 -14.89097 -14.69204 -14.63199 -14.39749 -13.88159 -13.64563 -13.61375 -13.39428 -13.37669 -13.05283 -12.85343 -12.77543 -12.72719 -12.25806 -12.22769 -12.03700 -11.79614 -11.72589 -11.52149 -10.67616 -10.60592 -10.53484 -9.90341 -9.81949 -8.20766 -6.32530 -0.80119 -0.53273 -0.24144 0.26033 1.37828 1.40617 1.52435 1.89745 2.18750 2.40732 2.72974 2.93138 3.09611 3.11972 3.64899 3.82303 3.97492 4.02123 4.11527 4.42182 4.43017 4.46693 4.67055 4.68334 4.85287 4.96121 5.01276 5.12011 5.14476 5.38207 5.48283 5.49857 5.70075 5.91402 6.09139 6.75468 7.35968 8.87634 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.005049 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.627259 B = 5544.151076 C = 6430.456589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.108 3.892 3 N -0.980 5.980 4 C 0.273 3.727 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.267 1.267 13 S 2.667 3.333 14 O -0.983 6.983 15 O -0.951 6.951 16 C -0.715 4.715 17 C 0.170 3.830 18 F -0.130 7.130 19 C -0.157 4.157 20 C -0.011 4.011 21 C -0.114 4.114 22 C 0.001 3.999 23 Br 0.006 6.994 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.178 0.822 33 H 0.206 0.794 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.594 -2.361 -16.532 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.819 5.819 4 C 0.149 3.851 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.192 1.192 13 S 2.757 3.243 14 O -0.974 6.974 15 O -0.941 6.941 16 C -0.804 4.804 17 C 0.148 3.852 18 F -0.109 7.109 19 C -0.176 4.176 20 C -0.030 4.030 21 C -0.134 4.134 22 C -0.080 4.080 23 Br 0.092 6.908 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.196 0.804 33 H 0.223 0.777 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.628 -2.929 -16.931 22.566 hybrid contribution 0.702 0.872 1.186 1.631 sum -13.926 -2.058 -15.745 21.121 Atomic orbital electron populations 1.22281 0.94841 1.03671 1.01829 1.21482 0.95311 0.80948 1.03965 1.57312 1.81608 1.22379 1.20618 1.18631 0.96211 0.90211 0.80014 1.21820 1.03048 1.27671 1.05974 0.92783 1.25763 1.00971 0.94625 0.97406 1.70025 1.37788 1.31009 1.17663 0.85515 0.79479 0.78234 0.78548 1.19293 1.20542 1.19246 1.02449 0.74763 0.73757 0.73314 1.93571 1.60575 1.59264 1.83967 1.93722 1.83533 1.55101 1.61734 1.30790 1.26319 1.06339 1.16974 1.17649 0.89646 0.88612 0.89290 1.91674 1.69801 1.79524 1.69865 1.21877 0.92348 1.03434 0.99945 1.21972 0.98332 0.92328 0.90331 1.21867 0.94870 0.96247 1.00429 1.21630 0.96442 0.93336 0.96588 1.96892 1.94601 1.09279 1.89998 0.92673 0.88793 0.93151 0.89083 0.90109 0.97016 0.95246 0.92361 0.80413 0.77735 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 10.12 71.98 0.73 -4.03 16 2 C 0.11 3.85 6.40 86.38 0.55 4.40 16 3 N -0.98 -43.37 2.77 -519.83 -1.44 -44.80 16 4 C 0.27 14.59 5.10 85.63 0.44 15.02 16 5 C -0.55 -32.06 9.38 25.60 0.24 -31.82 16 6 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.92 -55.83 13.29 21.45 0.28 -55.55 16 9 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 S 2.67 116.13 5.39 -56.49 -0.30 115.83 16 14 O -0.98 -52.20 15.17 -128.00 -1.94 -54.14 16 15 O -0.95 -39.32 12.75 -128.00 -1.63 -40.95 16 16 C -0.71 -24.67 5.98 22.33 0.13 -24.54 16 17 C 0.17 5.63 7.21 22.37 0.16 5.79 16 18 F -0.13 -5.47 15.21 44.97 0.68 -4.79 16 19 C -0.16 -3.23 10.03 22.32 0.22 -3.00 16 20 C -0.01 -0.15 10.04 22.26 0.22 0.08 16 21 C -0.11 -1.87 9.79 22.29 0.22 -1.65 16 22 C 0.00 0.04 5.45 22.31 0.12 0.16 16 23 Br 0.01 0.15 27.86 -20.37 -0.57 -0.42 16 24 H 0.05 1.47 5.44 -2.39 -0.01 1.46 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 3.03 6.73 -2.39 -0.02 3.01 16 28 H 0.08 2.96 8.11 -2.38 -0.02 2.94 16 29 H 0.01 0.69 7.47 -2.39 -0.02 0.68 16 30 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 31 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 32 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 34 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -77.74 320.69 1.75 -75.99 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: 1.13 Total: -0.58 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 3.50 Total: -38.46 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -1.15 Total: -100.35 kcal Atomic # 8 Polarization: -91.52 SS G_CDS: -3.57 Total: -95.09 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.68 Total: -4.79 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 116.13 SS G_CDS: -0.30 Total: 115.83 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.57 Total: -0.42 kcal Total: -77.74 1.75 -75.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084774720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal (2) G-P(sol) polarization free energy of solvation -77.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds