Wall clock time and date at job start Tue Mar 31 2020 07:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75300 * 124.30037 * 2 1 4 4 C 1.75897 * 92.19254 * 180.02562 * 3 2 1 5 5 C 1.39856 * 130.55753 * 180.02562 * 4 3 2 6 6 C 1.37466 * 120.17587 * 180.02562 * 5 4 3 7 7 C 1.38853 * 120.18892 * 0.02562 * 6 5 4 8 8 C 1.36089 * 120.59157 * 359.97177 * 7 6 5 9 9 C 1.39747 * 109.68588 * 359.97438 * 4 3 2 10 10 C 1.31828 * 124.29848 * 180.02562 * 2 1 3 11 11 S 1.76205 * 122.55126 * 359.97438 * 10 2 1 12 12 O 1.42098 * 106.40216 * 32.83819 * 11 10 2 13 13 O 1.42099 * 106.40178 * 165.75820 * 11 10 2 14 14 N 1.65595 * 107.21509 * 279.29788 * 11 10 2 15 15 C 1.46962 * 120.59817 * 269.72054 * 14 11 10 16 16 C 1.53809 * 108.40083 * 124.75671 * 15 14 11 17 17 N 1.46962 * 108.57959 * 49.64296 * 16 15 14 18 18 C 1.36931 * 120.59704 * 124.66813 * 17 16 15 19 19 H 1.08008 * 120.00128 * 209.38984 * 18 17 16 20 20 C 1.38810 * 120.00295 * 29.39365 * 18 17 16 21 21 N 1.31620 * 119.99663 * 16.66337 * 20 18 17 22 22 Si 1.86803 * 120.00270 * 196.67298 * 20 18 17 23 23 H 1.48501 * 109.47090 * 89.99601 * 22 20 18 24 24 H 1.48502 * 109.47099 * 209.99751 * 22 20 18 25 25 H 1.48500 * 109.47089 * 329.99575 * 22 20 18 26 26 C 1.46975 * 118.81017 * 304.64915 * 17 16 15 27 27 C 1.46973 * 120.59353 * 90.00423 * 14 11 10 28 28 H 1.09008 * 109.47321 * 264.09278 * 1 2 3 29 29 H 1.08996 * 109.47339 * 24.09075 * 1 2 3 30 30 H 1.09004 * 109.47349 * 144.08991 * 1 2 3 31 31 H 1.07997 * 119.91627 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.90731 * 179.97438 * 6 5 4 33 33 H 1.07994 * 119.70203 * 180.02562 * 7 6 5 34 34 H 1.07995 * 119.77222 * 180.30333 * 8 7 6 35 35 H 1.08997 * 109.61542 * 244.54293 * 15 14 11 36 36 H 1.09000 * 109.60741 * 5.05230 * 15 14 11 37 37 H 1.09003 * 109.74287 * 289.85190 * 16 15 14 38 38 H 1.09002 * 109.53635 * 169.30806 * 16 15 14 39 39 H 0.97003 * 119.99615 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.60611 * 295.47564 * 26 17 16 41 41 H 1.08999 * 109.74889 * 175.05221 * 26 17 16 42 42 H 1.09001 * 109.60893 * 354.94264 * 27 14 11 43 43 H 1.08995 * 109.60827 * 115.46100 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4948 1.4481 0.0000 4 6 3.9848 0.5132 -0.0008 5 6 5.3198 0.9299 -0.0007 6 6 6.3335 0.0014 -0.0019 7 6 6.0377 -1.3552 -0.0038 8 6 4.7455 -1.7823 -0.0039 9 6 3.6842 -0.8515 -0.0004 10 6 2.2498 -1.0890 -0.0005 11 16 1.5571 -2.7092 -0.0005 12 8 0.3460 -2.6277 -0.7393 13 8 2.6141 -3.5975 -0.3365 14 7 1.1300 -3.0597 1.5605 15 6 2.0829 -3.7143 2.4678 16 6 2.2324 -2.8427 3.7262 17 7 0.8915 -2.5102 4.2275 18 6 0.5383 -2.8000 5.5183 19 1 -0.4928 -3.0098 5.7620 20 6 1.5054 -2.8241 6.5138 21 7 2.6773 -2.2618 6.3066 22 14 1.1438 -3.6546 8.1475 23 1 1.5389 -5.0842 8.0742 24 1 1.9135 -2.9830 9.2254 25 1 -0.3085 -3.5569 8.4417 26 6 -0.0635 -1.8606 3.3185 27 6 -0.2110 -2.7272 2.0618 28 1 -0.3634 -0.1058 1.0223 29 1 -0.3634 0.9381 -0.4195 30 1 -0.3634 -0.8324 -0.6028 31 1 5.5551 1.9840 -0.0005 32 1 7.3629 0.3280 -0.0023 33 1 6.8402 -2.0779 -0.0044 34 1 4.5306 -2.8407 -0.0004 35 1 1.7072 -4.6994 2.7444 36 1 3.0492 -3.8143 1.9733 37 1 2.7678 -1.9263 3.4779 38 1 2.7815 -3.3949 4.4889 39 1 3.3532 -2.2789 7.0021 40 1 0.3085 -0.8742 3.0413 41 1 -1.0311 -1.7617 3.8104 42 1 -0.7601 -2.1749 1.2991 43 1 -0.7463 -3.6436 2.3101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084937468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:44 Heat of formation + Delta-G solvation = 8.052637 kcal Electronic energy + Delta-G solvation = -29969.785674 eV Core-core repulsion = 26041.415303 eV Total energy + Delta-G solvation = -3928.370371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.086 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -39.53922 -37.68093 -37.33167 -35.92933 -35.67863 -33.85553 -31.38776 -31.12721 -30.97949 -30.18450 -27.08144 -26.42024 -23.94099 -23.29111 -22.93104 -22.20312 -21.17751 -19.93293 -18.53973 -18.04639 -17.68126 -16.72296 -16.20917 -16.03923 -15.26780 -15.14410 -14.84124 -14.61866 -14.47002 -14.07237 -13.92374 -13.74156 -13.70532 -13.49454 -13.08418 -13.04336 -12.81381 -12.69105 -12.28042 -12.18095 -12.07968 -11.90040 -11.47049 -11.35017 -11.15755 -11.06300 -10.84487 -10.78140 -10.71271 -10.51317 -10.44706 -10.25477 -10.00452 -9.86131 -9.72115 -8.80980 -8.52580 -8.49444 -7.99210 -6.71821 -5.86213 -3.32031 0.40921 0.59510 1.19550 1.38752 1.74974 1.80842 3.21767 3.33556 3.41081 3.41699 3.66315 3.89299 4.21541 4.42718 4.49981 4.78004 4.90420 5.02539 5.06809 5.14916 5.29643 5.33214 5.40320 5.45741 5.48592 5.60913 5.69104 5.71671 5.84878 5.97960 5.99256 6.06489 6.22016 6.23038 6.30557 6.32970 6.37511 6.49778 6.58631 6.75506 6.84619 6.86044 7.24345 7.52462 7.72246 8.35795 9.11495 9.73980 10.31685 11.21249 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.004103 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.447233 B = 6823.433171 C = 7558.545791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 S 0.113 5.887 4 C -0.148 4.148 5 C -0.083 4.083 6 C -0.108 4.108 7 C -0.110 4.110 8 C -0.091 4.091 9 C -0.010 4.010 10 C -0.683 4.683 11 S 2.705 3.295 12 O -0.962 6.962 13 O -0.958 6.958 14 N -0.982 5.982 15 C 0.095 3.905 16 C 0.160 3.840 17 N -0.586 5.586 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.130 3.870 27 C 0.100 3.900 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.154 0.846 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.098 0.902 39 H 0.255 0.745 40 H 0.020 0.980 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 5.140 -14.242 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.132 4.132 3 S 0.379 5.621 4 C -0.263 4.263 5 C -0.105 4.105 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.017 4.017 10 C -0.781 4.781 11 S 2.793 3.207 12 O -0.953 6.953 13 O -0.948 6.948 14 N -0.822 5.822 15 C -0.031 4.031 16 C 0.032 3.968 17 N -0.308 5.308 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.002 3.998 27 C -0.027 4.027 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.461 6.211 -14.822 16.137 hybrid contribution 0.608 -0.902 1.336 1.723 sum 2.070 5.309 -13.486 14.640 Atomic orbital electron populations 1.21514 0.86516 1.06920 1.05911 1.23978 1.00350 0.95452 0.93376 1.83964 0.94605 1.07411 1.76096 1.22691 0.97718 0.96393 1.09511 1.20417 0.89340 0.99809 1.00957 1.21062 0.98801 0.93051 0.99908 1.20765 0.96446 0.95925 0.99863 1.21364 0.91257 1.00806 0.97592 1.18383 0.90113 0.92426 1.00766 1.30786 1.01473 1.23482 1.22367 1.01618 0.73120 0.73083 0.72875 1.93453 1.45203 1.86778 1.69826 1.93473 1.56845 1.62060 1.82429 1.57394 1.21779 1.73088 1.29904 1.22465 0.90530 0.97397 0.92704 1.21231 0.87510 0.95976 0.92069 1.43853 1.10592 1.67811 1.08589 1.19186 0.94434 1.41549 0.83419 0.91534 1.25091 0.97258 0.99383 0.97651 1.70021 1.06062 1.44419 1.33898 0.86277 0.77723 0.79301 0.83348 1.21337 1.21795 1.20412 1.21295 0.95004 0.93201 0.90260 1.22163 0.81567 1.00971 0.97984 0.88172 0.89652 0.85390 0.85621 0.85186 0.85082 0.82821 0.91154 0.90498 0.95866 0.88411 0.93503 0.96184 0.91486 0.90357 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.99 36.00 0.32 -1.47 16 2 C -0.01 -0.18 6.36 -36.21 -0.23 -0.41 16 3 S 0.11 1.51 23.20 -107.50 -2.49 -0.98 16 4 C -0.15 -2.20 6.48 -38.41 -0.25 -2.45 16 5 C -0.08 -1.05 10.07 -39.26 -0.40 -1.44 16 6 C -0.11 -1.24 10.03 -39.64 -0.40 -1.63 16 7 C -0.11 -1.39 9.95 -40.13 -0.40 -1.79 16 8 C -0.09 -1.38 9.48 -39.24 -0.37 -1.75 16 9 C -0.01 -0.16 6.00 -105.38 -0.63 -0.79 16 10 C -0.68 -11.01 6.05 -38.64 -0.23 -11.25 16 11 S 2.70 44.75 5.52 -107.50 -0.59 44.16 16 12 O -0.96 -16.11 13.63 -57.17 -0.78 -16.89 16 13 O -0.96 -17.09 13.85 -57.17 -0.79 -17.88 16 14 N -0.98 -16.84 3.26 -113.00 -0.37 -17.20 16 15 C 0.10 1.77 6.58 -3.37 -0.02 1.75 16 16 C 0.16 3.61 5.51 -3.37 -0.02 3.59 16 17 N -0.59 -13.78 2.96 -171.76 -0.51 -14.29 16 18 C -0.26 -6.65 9.57 -15.06 -0.14 -6.80 16 19 H 0.07 1.69 7.88 -52.48 -0.41 1.28 16 20 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 21 N -0.90 -25.15 11.24 55.49 0.62 -24.53 16 22 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.13 2.49 6.67 -3.59 -0.02 2.47 16 27 C 0.10 1.63 6.44 -3.59 -0.02 1.60 16 28 H 0.10 1.13 6.79 -51.92 -0.35 0.78 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.13 1.61 5.15 -51.93 -0.27 1.34 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.15 2.38 5.79 -52.49 -0.30 2.07 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.31 7.08 -51.93 -0.37 0.95 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 2.46 6.06 -51.93 -0.31 2.14 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.02 0.39 7.62 -51.93 -0.40 -0.01 16 41 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 42 H 0.08 1.07 5.46 -51.93 -0.28 0.78 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -31.42 362.49 -12.59 -44.01 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.21 Total: 2.54 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.90 Total: -20.31 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.25 Total: -56.02 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.57 Total: -34.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 16 Polarization: 46.26 SS G_CDS: -3.09 Total: 43.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.42 -12.59 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084937468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.059 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds