Wall clock time and date at job start Tue Mar 31 2020 07:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75300 * 124.30037 * 2 1 4 4 C 1.75897 * 92.19254 * 180.02562 * 3 2 1 5 5 C 1.39856 * 130.55753 * 180.02562 * 4 3 2 6 6 C 1.37466 * 120.17587 * 180.02562 * 5 4 3 7 7 C 1.38853 * 120.18892 * 0.02562 * 6 5 4 8 8 C 1.36089 * 120.59157 * 359.97177 * 7 6 5 9 9 C 1.39747 * 109.68588 * 359.97438 * 4 3 2 10 10 C 1.31828 * 124.29848 * 180.02562 * 2 1 3 11 11 S 1.76205 * 122.55126 * 359.97438 * 10 2 1 12 12 O 1.42098 * 106.40216 * 32.83819 * 11 10 2 13 13 O 1.42099 * 106.40178 * 165.75820 * 11 10 2 14 14 N 1.65595 * 107.21509 * 279.29788 * 11 10 2 15 15 C 1.46962 * 120.59817 * 269.72054 * 14 11 10 16 16 C 1.53809 * 108.40083 * 124.75671 * 15 14 11 17 17 N 1.46962 * 108.57959 * 49.64296 * 16 15 14 18 18 C 1.36931 * 120.59704 * 124.66813 * 17 16 15 19 19 H 1.08008 * 120.00128 * 209.38984 * 18 17 16 20 20 C 1.38810 * 120.00295 * 29.39365 * 18 17 16 21 21 N 1.31620 * 119.99663 * 16.66337 * 20 18 17 22 22 Si 1.86803 * 120.00270 * 196.67298 * 20 18 17 23 23 H 1.48501 * 109.47090 * 89.99601 * 22 20 18 24 24 H 1.48502 * 109.47099 * 209.99751 * 22 20 18 25 25 H 1.48500 * 109.47089 * 329.99575 * 22 20 18 26 26 C 1.46975 * 118.81017 * 304.64915 * 17 16 15 27 27 C 1.46973 * 120.59353 * 90.00423 * 14 11 10 28 28 H 1.09008 * 109.47321 * 264.09278 * 1 2 3 29 29 H 1.08996 * 109.47339 * 24.09075 * 1 2 3 30 30 H 1.09004 * 109.47349 * 144.08991 * 1 2 3 31 31 H 1.07997 * 119.91627 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.90731 * 179.97438 * 6 5 4 33 33 H 1.07994 * 119.70203 * 180.02562 * 7 6 5 34 34 H 1.07995 * 119.77222 * 180.30333 * 8 7 6 35 35 H 1.08997 * 109.61542 * 244.54293 * 15 14 11 36 36 H 1.09000 * 109.60741 * 5.05230 * 15 14 11 37 37 H 1.09003 * 109.74287 * 289.85190 * 16 15 14 38 38 H 1.09002 * 109.53635 * 169.30806 * 16 15 14 39 39 H 0.97003 * 119.99615 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.60611 * 295.47564 * 26 17 16 41 41 H 1.08999 * 109.74889 * 175.05221 * 26 17 16 42 42 H 1.09001 * 109.60893 * 354.94264 * 27 14 11 43 43 H 1.08995 * 109.60827 * 115.46100 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4948 1.4481 0.0000 4 6 3.9848 0.5132 -0.0008 5 6 5.3198 0.9299 -0.0007 6 6 6.3335 0.0014 -0.0019 7 6 6.0377 -1.3552 -0.0038 8 6 4.7455 -1.7823 -0.0039 9 6 3.6842 -0.8515 -0.0004 10 6 2.2498 -1.0890 -0.0005 11 16 1.5571 -2.7092 -0.0005 12 8 0.3460 -2.6277 -0.7393 13 8 2.6141 -3.5975 -0.3365 14 7 1.1300 -3.0597 1.5605 15 6 2.0829 -3.7143 2.4678 16 6 2.2324 -2.8427 3.7262 17 7 0.8915 -2.5102 4.2275 18 6 0.5383 -2.8000 5.5183 19 1 -0.4928 -3.0098 5.7620 20 6 1.5054 -2.8241 6.5138 21 7 2.6773 -2.2618 6.3066 22 14 1.1438 -3.6546 8.1475 23 1 1.5389 -5.0842 8.0742 24 1 1.9135 -2.9830 9.2254 25 1 -0.3085 -3.5569 8.4417 26 6 -0.0635 -1.8606 3.3185 27 6 -0.2110 -2.7272 2.0618 28 1 -0.3634 -0.1058 1.0223 29 1 -0.3634 0.9381 -0.4195 30 1 -0.3634 -0.8324 -0.6028 31 1 5.5551 1.9840 -0.0005 32 1 7.3629 0.3280 -0.0023 33 1 6.8402 -2.0779 -0.0044 34 1 4.5306 -2.8407 -0.0004 35 1 1.7072 -4.6994 2.7444 36 1 3.0492 -3.8143 1.9733 37 1 2.7678 -1.9263 3.4779 38 1 2.7815 -3.3949 4.4889 39 1 3.3532 -2.2789 7.0021 40 1 0.3085 -0.8742 3.0413 41 1 -1.0311 -1.7617 3.8104 42 1 -0.7601 -2.1749 1.2991 43 1 -0.7463 -3.6436 2.3101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084937468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:43 Heat of formation + Delta-G solvation = -10.343282 kcal Electronic energy + Delta-G solvation = -29970.583381 eV Core-core repulsion = 26041.415303 eV Total energy + Delta-G solvation = -3929.168078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.086 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.55782 -39.24808 -38.65035 -37.11682 -36.88892 -35.60308 -32.93862 -32.38863 -32.01510 -31.75923 -28.28548 -28.00284 -25.06825 -24.96648 -24.51426 -23.22888 -22.32785 -21.48572 -19.97177 -19.21516 -19.01311 -18.02829 -17.73629 -17.28049 -16.74517 -16.45499 -16.12915 -15.70012 -15.65807 -15.47117 -15.43905 -15.24393 -15.12514 -14.90831 -14.62213 -14.12657 -13.94528 -13.71558 -13.64700 -13.50494 -13.32898 -13.06539 -13.02187 -12.92694 -12.63682 -12.49377 -12.36971 -12.14004 -12.06731 -11.98866 -11.84910 -11.76109 -11.63603 -11.43518 -10.87616 -10.59107 -10.20357 -9.53332 -9.02584 -8.61660 -7.85197 -5.33517 -0.80968 -0.53277 0.16081 0.33822 0.67139 0.72184 1.49221 1.51450 1.58955 1.91923 2.52305 2.55361 2.70102 3.07261 3.29534 3.36296 3.61725 3.80359 3.81802 3.94820 4.05117 4.20360 4.27011 4.36139 4.40455 4.46880 4.51349 4.56337 4.62350 4.64011 4.71065 4.75900 4.87615 5.00689 5.05960 5.12010 5.20363 5.22040 5.30072 5.32191 5.49724 5.58051 5.65864 5.73959 5.87912 6.39752 7.14681 7.84258 8.38060 9.19804 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.004103 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.447233 B = 6823.433171 C = 7558.545791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.019 4.019 3 S 0.147 5.853 4 C -0.175 4.175 5 C -0.089 4.089 6 C -0.103 4.103 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.038 4.038 10 C -0.706 4.706 11 S 2.718 3.282 12 O -0.964 6.964 13 O -0.975 6.975 14 N -0.985 5.985 15 C 0.108 3.892 16 C 0.170 3.830 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.072 0.928 20 C -0.046 4.046 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.268 1.268 26 C 0.127 3.873 27 C 0.104 3.896 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.087 0.913 37 H -0.003 1.003 38 H 0.068 0.932 39 H 0.249 0.751 40 H 0.019 0.981 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 6.011 -15.038 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 S 0.413 5.587 4 C -0.291 4.291 5 C -0.110 4.110 6 C -0.124 4.124 7 C -0.128 4.128 8 C -0.141 4.141 9 C -0.045 4.045 10 C -0.806 4.806 11 S 2.808 3.192 12 O -0.955 6.955 13 O -0.965 6.965 14 N -0.824 5.824 15 C -0.018 4.018 16 C 0.043 3.957 17 N -0.327 5.327 18 C -0.390 4.390 19 H 0.089 0.911 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.226 1.226 25 H -0.193 1.193 26 C 0.000 4.000 27 C -0.022 4.022 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.015 0.985 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.028 7.061 -15.643 17.194 hybrid contribution 0.762 -1.063 1.516 2.002 sum 1.790 5.998 -14.127 15.452 Atomic orbital electron populations 1.21652 0.84859 1.08356 1.06386 1.24413 1.01711 0.95717 0.92006 1.83712 0.93521 1.06160 1.75329 1.23074 0.99329 0.96307 1.10370 1.20879 0.88660 1.01542 0.99968 1.21531 1.00481 0.92278 0.98083 1.21172 0.96089 0.97376 0.98196 1.21471 0.92520 1.00351 0.99794 1.18628 0.90421 0.93476 1.01983 1.30649 1.01956 1.23286 1.24729 1.01111 0.72710 0.73056 0.72321 1.93448 1.45349 1.87053 1.69643 1.93449 1.57333 1.63181 1.82583 1.57408 1.21832 1.73276 1.29853 1.22161 0.91706 0.96622 0.91354 1.20951 0.86948 0.94972 0.92837 1.44097 1.11300 1.68611 1.08668 1.19522 0.94588 1.40349 0.84502 0.91073 1.25782 0.97296 1.00422 1.00717 1.70173 1.06928 1.46214 1.34598 0.85311 0.77794 0.77993 0.79568 1.21305 1.22637 1.19268 1.21464 0.94363 0.93391 0.90757 1.22174 0.81496 1.01116 0.97437 0.87504 0.86801 0.85865 0.82981 0.81406 0.82483 0.84029 0.90660 0.89445 0.98518 0.91425 0.94169 0.96300 0.90428 0.87350 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.99 71.23 0.64 -2.73 16 2 C -0.02 -0.52 6.36 24.90 0.16 -0.36 16 3 S 0.15 3.72 23.20 -56.49 -1.31 2.41 16 4 C -0.18 -5.10 6.48 23.03 0.15 -4.95 16 5 C -0.09 -2.06 10.07 22.48 0.23 -1.84 16 6 C -0.10 -2.14 10.03 22.23 0.22 -1.91 16 7 C -0.11 -2.62 9.95 21.92 0.22 -2.40 16 8 C -0.12 -3.76 9.48 22.49 0.21 -3.55 16 9 C -0.04 -1.25 6.00 -20.35 -0.12 -1.37 16 10 C -0.71 -22.70 6.05 23.32 0.14 -22.55 16 11 S 2.72 89.18 5.52 -56.49 -0.31 88.87 16 12 O -0.96 -31.22 13.63 -128.00 -1.74 -32.97 16 13 O -0.97 -35.23 13.85 -128.00 -1.77 -37.00 16 14 N -0.98 -33.34 3.26 -511.43 -1.67 -35.01 16 15 C 0.11 4.07 6.58 86.56 0.57 4.64 16 16 C 0.17 7.95 5.51 86.56 0.48 8.43 16 17 N -0.60 -28.57 2.96 -697.33 -2.07 -30.63 16 18 C -0.26 -13.49 9.57 84.03 0.80 -12.69 16 19 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 20 C -0.05 -2.49 4.92 84.86 0.42 -2.08 16 21 N -0.93 -53.61 11.24 21.65 0.24 -53.37 16 22 Si 0.96 43.47 29.59 68.60 2.03 45.50 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 C 0.13 4.76 6.67 86.41 0.58 5.33 16 27 C 0.10 3.23 6.44 86.41 0.56 3.78 16 28 H 0.11 2.20 6.79 -2.38 -0.02 2.18 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.12 2.86 5.15 -2.39 -0.01 2.85 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.14 4.58 5.79 -2.91 -0.02 4.56 16 35 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.09 3.08 7.08 -2.39 -0.02 3.06 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.07 3.55 6.06 -2.39 -0.01 3.54 16 39 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.02 0.72 7.62 -2.39 -0.02 0.70 16 41 H 0.08 2.70 7.94 -2.39 -0.02 2.68 16 42 H 0.11 2.71 5.46 -2.39 -0.01 2.70 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -68.86 362.49 -0.30 -69.16 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.05 Total: 17.29 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 5.25 Total: -34.24 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.49 Total: -119.01 kcal Atomic # 8 Polarization: -66.45 SS G_CDS: -3.52 Total: -69.97 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 92.90 SS G_CDS: -1.62 Total: 91.28 kcal Total: -68.86 -0.30 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084937468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.814 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds