Wall clock time and date at job start Tue Mar 31 2020 07:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.44880 * 2 1 4 4 C 1.55700 * 111.46918 * 237.58630 * 2 1 3 5 5 H 1.09001 * 110.90094 * 122.84792 * 4 2 1 6 6 O 1.42896 * 109.89760 * 0.55352 * 4 2 1 7 7 C 1.55924 * 104.74325 * 241.94998 * 4 2 1 8 8 Br 1.96603 * 116.52462 * 159.74363 * 7 4 2 9 9 C 1.55924 * 104.49952 * 289.06877 * 7 4 2 10 10 C 1.54586 * 104.63887 * 70.28392 * 9 7 4 11 11 C 1.55918 * 104.64610 * 359.97438 * 10 9 7 12 12 C 1.50707 * 115.92451 * 160.03434 * 11 10 9 13 13 H 1.07997 * 120.00062 * 210.95181 * 12 11 10 14 14 C 1.37875 * 119.99674 * 30.94643 * 12 11 10 15 15 N 1.31520 * 119.99950 * 20.01153 * 14 12 11 16 16 Si 1.86794 * 119.99915 * 200.01507 * 14 12 11 17 17 H 1.48503 * 109.47161 * 90.00335 * 16 14 12 18 18 H 1.48501 * 109.47318 * 329.99835 * 16 14 12 19 19 H 1.48513 * 109.47217 * 209.99877 * 16 14 12 20 20 C 1.56952 * 100.65222 * 33.13184 * 7 4 2 21 21 H 1.08994 * 112.02791 * 63.16868 * 20 7 4 22 22 Br 1.96602 * 112.02517 * 189.69288 * 20 7 4 23 23 H 1.08995 * 109.47628 * 297.61319 * 1 2 3 24 24 H 1.09007 * 109.47097 * 57.61669 * 1 2 3 25 25 H 1.08998 * 109.47254 * 177.60826 * 1 2 3 26 26 H 1.09007 * 109.47059 * 177.03430 * 3 2 1 27 27 H 1.08995 * 109.46955 * 297.03687 * 3 2 1 28 28 H 1.08999 * 109.47018 * 57.03846 * 3 2 1 29 29 H 0.96708 * 113.99852 * 183.49559 * 6 4 2 30 30 H 1.09005 * 110.40211 * 189.06714 * 9 7 4 31 31 H 1.08991 * 110.40547 * 311.37230 * 9 7 4 32 32 H 1.09001 * 110.39682 * 241.20265 * 10 9 7 33 33 H 1.08994 * 110.40283 * 118.79229 * 10 9 7 34 34 H 0.96998 * 120.00146 * 3.68539 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0998 -0.7767 -1.2232 5 1 2.7561 -0.1401 -1.8166 6 8 1.0274 -1.2719 -2.0274 7 6 2.9049 -1.9590 -0.6025 8 35 3.2584 -3.4939 -1.7791 9 6 4.1587 -1.2856 0.0346 10 6 3.6080 -0.5067 1.2511 11 6 2.0735 -0.7823 1.2339 12 6 1.3475 -0.5488 2.5338 13 1 0.4781 -1.1401 2.7805 14 6 1.7934 0.4196 3.4080 15 7 2.5727 1.3870 2.9760 16 14 1.2908 0.3576 5.2060 17 1 2.2847 -0.4379 5.9707 18 1 -0.0471 -0.2759 5.3244 19 1 1.2353 1.7374 5.7524 20 6 2.0490 -2.2510 0.6802 21 1 1.0391 -2.5775 0.4322 22 35 2.9454 -3.5119 1.8934 23 1 -0.3634 0.4763 0.9105 24 1 -0.3634 0.5504 -0.8679 25 1 -0.3634 -1.0267 -0.0429 26 1 3.1531 1.4155 0.0532 27 1 1.7537 1.9372 -0.9153 28 1 1.6675 1.9694 0.8622 29 1 1.3146 -1.8110 -2.7772 30 1 4.8726 -2.0424 0.3596 31 1 4.6259 -0.6036 -0.6757 32 1 3.8035 0.5598 1.1394 33 1 4.0513 -0.8805 2.1739 34 1 2.7904 1.4499 2.0329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085398931.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:58 Heat of formation + Delta-G solvation = -31.530670 kcal Electronic energy + Delta-G solvation = -19417.413856 eV Core-core repulsion = 16443.116380 eV Total energy + Delta-G solvation = -2974.297476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 365.957 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -40.54953 -35.76951 -33.51937 -32.21429 -30.11913 -29.82656 -28.05712 -27.39892 -26.04561 -24.21255 -23.51284 -20.15215 -19.33676 -18.35331 -16.78362 -16.23256 -15.43381 -14.78166 -14.07554 -13.80857 -13.43789 -12.86160 -12.44115 -12.10783 -11.86599 -11.85240 -11.46394 -11.22878 -11.04926 -11.01965 -10.77023 -10.50274 -10.37537 -10.14641 -9.97176 -9.93815 -9.84152 -9.54085 -9.40510 -9.24353 -8.96622 -8.88245 -8.70140 -8.25945 -6.41154 -4.15892 1.78796 2.50014 3.42855 3.44890 3.60510 4.32366 4.49987 4.55847 4.81783 4.92919 5.13185 5.51423 5.57307 5.72818 5.75186 5.86299 5.94397 6.09153 6.17404 6.18595 6.30836 6.43501 6.54916 6.72339 6.78357 6.84085 6.98002 7.13818 7.18345 7.32871 7.85054 8.06473 8.38546 8.76720 9.50235 10.88996 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.007158 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.939120 B = 3910.641092 C = 4963.080074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.061 4.061 3 C -0.143 4.143 4 C 0.122 3.878 5 H 0.062 0.938 6 O -0.550 6.550 7 C -0.066 4.066 8 Br -0.138 7.138 9 C -0.113 4.113 10 C -0.129 4.129 11 C 0.105 3.895 12 C -0.572 4.572 13 H 0.059 0.941 14 C 0.044 3.956 15 N -0.902 5.902 16 Si 1.054 2.946 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.026 4.026 21 H 0.104 0.896 22 Br -0.157 7.157 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.365 0.635 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -6.075 -8.491 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 C -0.200 4.200 4 C 0.060 3.940 5 H 0.080 0.920 6 O -0.354 6.354 7 C -0.144 4.144 8 Br -0.055 7.055 9 C -0.152 4.152 10 C -0.167 4.167 11 C 0.103 3.897 12 C -0.609 4.609 13 H 0.078 0.922 14 C -0.164 4.164 15 N -0.539 5.539 16 Si 0.883 3.117 17 H -0.212 1.212 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.123 4.123 21 H 0.123 0.877 22 Br -0.075 7.075 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.212 0.788 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.313 -5.968 -6.607 9.198 hybrid contribution 0.042 -0.757 -2.145 2.275 sum 2.354 -6.725 -8.751 11.285 Atomic orbital electron populations 1.21281 0.93493 1.00920 1.00287 1.22310 0.96858 0.94731 0.92371 1.22138 1.00713 0.95552 1.01585 1.23646 0.87197 0.90782 0.92349 0.91981 1.86604 1.34134 1.71408 1.43303 1.27624 1.00687 0.91248 0.94819 1.97242 1.96279 1.45280 1.66727 1.22923 0.94701 0.99202 0.98370 1.23093 0.97700 1.00084 0.95832 1.20634 0.91841 0.84472 0.92787 1.21153 1.15515 1.23073 1.01128 0.92229 1.25558 0.94522 0.91647 1.04639 1.70864 1.34637 1.28348 1.20075 0.83761 0.76262 0.76024 0.75657 1.21195 1.21348 1.21360 1.27089 0.97209 0.98056 0.89982 0.87749 1.97169 1.81370 1.61612 1.67378 0.91589 0.94665 0.93493 0.92415 0.94435 0.89850 0.78783 0.90743 0.91741 0.89950 0.90805 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 7.21 37.16 0.27 -1.73 16 2 C -0.06 -1.16 0.59 -151.53 -0.09 -1.25 16 3 C -0.14 -2.70 6.82 37.16 0.25 -2.44 16 4 C 0.12 2.05 3.14 -23.73 -0.07 1.98 16 5 H 0.06 0.99 7.44 -51.93 -0.39 0.61 16 6 O -0.55 -8.91 11.63 -35.23 -0.41 -9.32 16 7 C -0.07 -1.11 1.41 -85.35 -0.12 -1.23 16 8 Br -0.14 -2.05 32.74 -68.01 -2.23 -4.28 16 9 C -0.11 -1.96 5.40 -24.34 -0.13 -2.09 16 10 C -0.13 -2.63 3.55 -24.34 -0.09 -2.71 16 11 C 0.10 2.20 0.35 -150.40 -0.05 2.14 16 12 C -0.57 -13.80 7.40 -34.44 -0.25 -14.06 16 13 H 0.06 1.51 7.89 -52.49 -0.41 1.10 16 14 C 0.04 1.11 5.13 -17.82 -0.09 1.02 16 15 N -0.90 -23.28 12.62 55.43 0.70 -22.58 16 16 Si 1.05 23.35 29.95 -169.99 -5.09 18.26 16 17 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.03 -0.50 3.23 -22.43 -0.07 -0.58 16 21 H 0.10 2.14 7.25 -51.93 -0.38 1.76 16 22 Br -0.16 -3.01 31.54 -68.01 -2.14 -5.15 16 23 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 24 H 0.03 0.63 8.09 -51.92 -0.42 0.21 16 25 H 0.05 0.92 6.86 -51.93 -0.36 0.57 16 26 H 0.06 1.06 5.45 -51.93 -0.28 0.78 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.78 6.51 -51.93 -0.34 1.44 16 29 H 0.37 4.87 8.04 45.56 0.37 5.24 16 30 H 0.07 1.29 7.76 -51.93 -0.40 0.88 16 31 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 32 H 0.08 1.74 3.80 -51.93 -0.20 1.54 16 33 H 0.07 1.67 7.76 -51.93 -0.40 1.27 16 34 H 0.29 6.93 2.33 -40.82 -0.10 6.84 16 LS Contribution 286.55 15.07 4.32 4.32 Total: -1.00 -24.73 286.55 -8.62 -33.35 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.31 Total: 6.36 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -0.45 Total: -20.96 kcal Atomic # 7 Polarization: -23.28 SS G_CDS: 0.70 Total: -22.58 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.41 Total: -9.32 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.09 Total: 18.26 kcal Atomic # 35 Polarization: -5.06 SS G_CDS: -4.37 Total: -9.43 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -24.73 -8.62 -33.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398931.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.822 kcal (2) G-P(sol) polarization free energy of solvation -24.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds