Wall clock time and date at job start Tue Mar 31 2020 07:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.44880 * 2 1 4 4 C 1.55700 * 111.46918 * 237.58630 * 2 1 3 5 5 H 1.09001 * 110.90094 * 122.84792 * 4 2 1 6 6 O 1.42896 * 109.89760 * 0.55352 * 4 2 1 7 7 C 1.55924 * 104.74325 * 241.94998 * 4 2 1 8 8 Br 1.96603 * 116.52462 * 159.74363 * 7 4 2 9 9 C 1.55924 * 104.49952 * 289.06877 * 7 4 2 10 10 C 1.54586 * 104.63887 * 70.28392 * 9 7 4 11 11 C 1.55918 * 104.64610 * 359.97438 * 10 9 7 12 12 C 1.50707 * 115.92451 * 160.03434 * 11 10 9 13 13 H 1.07997 * 120.00062 * 210.95181 * 12 11 10 14 14 C 1.37875 * 119.99674 * 30.94643 * 12 11 10 15 15 N 1.31520 * 119.99950 * 20.01153 * 14 12 11 16 16 Si 1.86794 * 119.99915 * 200.01507 * 14 12 11 17 17 H 1.48503 * 109.47161 * 90.00335 * 16 14 12 18 18 H 1.48501 * 109.47318 * 329.99835 * 16 14 12 19 19 H 1.48513 * 109.47217 * 209.99877 * 16 14 12 20 20 C 1.56952 * 100.65222 * 33.13184 * 7 4 2 21 21 H 1.08994 * 112.02791 * 63.16868 * 20 7 4 22 22 Br 1.96602 * 112.02517 * 189.69288 * 20 7 4 23 23 H 1.08995 * 109.47628 * 297.61319 * 1 2 3 24 24 H 1.09007 * 109.47097 * 57.61669 * 1 2 3 25 25 H 1.08998 * 109.47254 * 177.60826 * 1 2 3 26 26 H 1.09007 * 109.47059 * 177.03430 * 3 2 1 27 27 H 1.08995 * 109.46955 * 297.03687 * 3 2 1 28 28 H 1.08999 * 109.47018 * 57.03846 * 3 2 1 29 29 H 0.96708 * 113.99852 * 183.49559 * 6 4 2 30 30 H 1.09005 * 110.40211 * 189.06714 * 9 7 4 31 31 H 1.08991 * 110.40547 * 311.37230 * 9 7 4 32 32 H 1.09001 * 110.39682 * 241.20265 * 10 9 7 33 33 H 1.08994 * 110.40283 * 118.79229 * 10 9 7 34 34 H 0.96998 * 120.00146 * 3.68539 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0998 -0.7767 -1.2232 5 1 2.7561 -0.1401 -1.8166 6 8 1.0274 -1.2719 -2.0274 7 6 2.9049 -1.9590 -0.6025 8 35 3.2584 -3.4939 -1.7791 9 6 4.1587 -1.2856 0.0346 10 6 3.6080 -0.5067 1.2511 11 6 2.0735 -0.7823 1.2339 12 6 1.3475 -0.5488 2.5338 13 1 0.4781 -1.1401 2.7805 14 6 1.7934 0.4196 3.4080 15 7 2.5727 1.3870 2.9760 16 14 1.2908 0.3576 5.2060 17 1 2.2847 -0.4379 5.9707 18 1 -0.0471 -0.2759 5.3244 19 1 1.2353 1.7374 5.7524 20 6 2.0490 -2.2510 0.6802 21 1 1.0391 -2.5775 0.4322 22 35 2.9454 -3.5119 1.8934 23 1 -0.3634 0.4763 0.9105 24 1 -0.3634 0.5504 -0.8679 25 1 -0.3634 -1.0267 -0.0429 26 1 3.1531 1.4155 0.0532 27 1 1.7537 1.9372 -0.9153 28 1 1.6675 1.9694 0.8622 29 1 1.3146 -1.8110 -2.7772 30 1 4.8726 -2.0424 0.3596 31 1 4.6259 -0.6036 -0.6757 32 1 3.8035 0.5598 1.1394 33 1 4.0513 -0.8805 2.1739 34 1 2.7904 1.4499 2.0329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085398931.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:56 Heat of formation + Delta-G solvation = -44.243878 kcal Electronic energy + Delta-G solvation = -19417.965142 eV Core-core repulsion = 16443.116380 eV Total energy + Delta-G solvation = -2974.848762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 365.957 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.05262 -37.13649 -35.14691 -33.87200 -31.53490 -31.33206 -29.63071 -28.92642 -27.58820 -25.92868 -25.04604 -21.70265 -20.85691 -19.99226 -18.16356 -17.82758 -16.92925 -16.29564 -15.59737 -15.55795 -14.98769 -14.32345 -14.16107 -13.63966 -13.38977 -13.33250 -13.05090 -12.77636 -12.65979 -12.55636 -12.42636 -12.04294 -11.90426 -11.88043 -11.43617 -11.33877 -11.27938 -11.08971 -10.85635 -10.74891 -10.57047 -10.46116 -10.26685 -10.10405 -8.33796 -6.07104 0.43573 0.96491 1.61711 1.64081 1.82229 2.63089 2.95509 3.13818 3.31179 3.45572 3.49472 4.04711 4.13140 4.23122 4.27548 4.36974 4.44735 4.56494 4.64057 4.75780 4.80321 4.92166 5.02771 5.14443 5.19435 5.26159 5.39518 5.56132 5.58267 5.72551 6.25644 6.43751 6.71553 6.90275 7.61458 9.00729 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.007158 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.939120 B = 3910.641092 C = 4963.080074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.063 4.063 3 C -0.137 4.137 4 C 0.131 3.869 5 H 0.084 0.916 6 O -0.556 6.556 7 C -0.058 4.058 8 Br -0.107 7.107 9 C -0.107 4.107 10 C -0.121 4.121 11 C 0.090 3.910 12 C -0.573 4.573 13 H 0.038 0.962 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 1.083 2.917 17 H -0.284 1.284 18 H -0.281 1.281 19 H -0.290 1.290 20 C -0.026 4.026 21 H 0.092 0.908 22 Br -0.159 7.159 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.381 0.619 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -6.674 -10.417 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.065 4.065 3 C -0.194 4.194 4 C 0.070 3.930 5 H 0.102 0.898 6 O -0.363 6.363 7 C -0.137 4.137 8 Br -0.024 7.024 9 C -0.145 4.145 10 C -0.159 4.159 11 C 0.088 3.912 12 C -0.610 4.610 13 H 0.056 0.944 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.909 3.091 17 H -0.210 1.210 18 H -0.206 1.206 19 H -0.216 1.216 20 C -0.124 4.124 21 H 0.110 0.890 22 Br -0.077 7.077 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.230 0.770 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.881 -6.586 -8.550 11.171 hybrid contribution -0.178 -0.648 -1.581 1.718 sum 2.703 -7.234 -10.132 12.739 Atomic orbital electron populations 1.21165 0.93989 1.00327 0.99635 1.22174 0.96459 0.95014 0.92841 1.22035 1.00796 0.95197 1.01349 1.23449 0.87302 0.90627 0.91661 0.89815 1.86570 1.34012 1.71784 1.43893 1.27455 0.99835 0.92117 0.94251 1.97266 1.96118 1.43770 1.65281 1.22856 0.94776 0.99374 0.97529 1.22901 0.97114 0.99842 0.96089 1.20582 0.92115 0.86076 0.92438 1.21228 1.14903 1.22072 1.02825 0.94352 1.26243 0.94761 0.91742 1.06771 1.70880 1.36022 1.29092 1.20748 0.83367 0.76373 0.75802 0.73540 1.21015 1.20614 1.21616 1.26958 0.97359 0.96884 0.91181 0.88970 1.97163 1.81217 1.61521 1.67847 0.94050 0.93236 0.94165 0.91993 0.92131 0.92852 0.76997 0.90568 0.89279 0.90823 0.93664 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.60 7.21 71.98 0.52 -3.08 16 2 C -0.06 -2.33 0.59 -50.25 -0.03 -2.36 16 3 C -0.14 -4.99 6.82 71.98 0.49 -4.50 16 4 C 0.13 4.03 3.14 32.54 0.10 4.14 16 5 H 0.08 2.30 7.44 -2.39 -0.02 2.29 16 6 O -0.56 -16.21 11.63 -148.98 -1.73 -17.94 16 7 C -0.06 -1.81 1.41 -7.38 -0.01 -1.82 16 8 Br -0.11 -2.84 32.74 -20.37 -0.67 -3.51 16 9 C -0.11 -3.44 5.40 32.15 0.17 -3.27 16 10 C -0.12 -4.86 3.55 32.14 0.11 -4.75 16 11 C 0.09 3.74 0.35 -49.52 -0.02 3.73 16 12 C -0.57 -28.17 7.40 25.60 0.19 -27.99 16 13 H 0.04 2.00 7.89 -2.91 -0.02 1.98 16 14 C 0.01 0.47 5.13 84.65 0.43 0.90 16 15 N -0.93 -48.70 12.62 21.45 0.27 -48.43 16 16 Si 1.08 47.96 29.95 68.60 2.05 50.01 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 20 C -0.03 -1.00 3.23 33.38 0.11 -0.89 16 21 H 0.09 3.70 7.25 -2.39 -0.02 3.68 16 22 Br -0.16 -5.98 31.54 -20.37 -0.64 -6.62 16 23 H 0.04 1.75 7.36 -2.39 -0.02 1.74 16 24 H 0.05 1.72 8.09 -2.38 -0.02 1.70 16 25 H 0.04 1.56 6.86 -2.39 -0.02 1.54 16 26 H 0.06 2.19 5.45 -2.38 -0.01 2.18 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 2.28 6.51 -2.39 -0.02 2.27 16 29 H 0.38 8.68 8.04 -74.05 -0.60 8.08 16 30 H 0.08 2.45 7.76 -2.38 -0.02 2.43 16 31 H 0.09 2.47 7.84 -2.39 -0.02 2.45 16 32 H 0.07 3.07 3.80 -2.39 -0.01 3.06 16 33 H 0.04 2.05 7.76 -2.39 -0.02 2.03 16 34 H 0.29 14.26 2.33 -92.71 -0.22 14.04 16 Total: -1.00 -52.57 286.55 2.44 -50.13 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.09 Total: 16.25 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 2.07 Total: -39.89 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.27 Total: -48.43 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.73 Total: -17.94 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.05 Total: 50.01 kcal Atomic # 35 Polarization: -8.82 SS G_CDS: -1.31 Total: -10.13 kcal Total: -52.57 2.44 -50.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398931.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.888 kcal (2) G-P(sol) polarization free energy of solvation -52.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds