Wall clock time and date at job start Tue Mar 31 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.44787 * 2 1 4 4 C 1.54578 * 110.40398 * 122.38938 * 2 1 3 5 5 H 1.08998 * 110.40371 * 237.70031 * 4 2 1 6 6 O 1.42906 * 110.40248 * 359.97438 * 4 2 1 7 7 C 1.55921 * 104.64417 * 118.79217 * 4 2 1 8 8 Br 1.96605 * 115.92344 * 160.84128 * 7 4 2 9 9 C 1.58834 * 103.85969 * 289.98633 * 7 4 2 10 10 C 1.54584 * 104.36063 * 70.61451 * 9 7 4 11 11 C 1.55923 * 110.40172 * 237.61489 * 2 1 3 12 12 C 1.50699 * 115.92630 * 81.17164 * 11 2 1 13 13 H 1.07996 * 119.99444 * 36.33857 * 12 11 2 14 14 C 1.37868 * 120.00224 * 216.33711 * 12 11 2 15 15 N 1.31521 * 120.00020 * 170.81284 * 14 12 11 16 16 Si 1.86799 * 120.00248 * 350.80985 * 14 12 11 17 17 H 1.48497 * 109.47310 * 84.64485 * 16 14 12 18 18 H 1.48494 * 109.47426 * 204.64645 * 16 14 12 19 19 H 1.48507 * 109.47104 * 324.64678 * 16 14 12 20 20 C 1.56947 * 100.65147 * 33.77844 * 7 4 2 21 21 H 1.08999 * 112.02551 * 63.17719 * 20 7 4 22 22 Br 1.96603 * 112.02808 * 189.69613 * 20 7 4 23 23 H 1.09004 * 109.46860 * 305.94280 * 1 2 3 24 24 H 1.09002 * 109.47164 * 65.94614 * 1 2 3 25 25 H 1.08998 * 109.47214 * 185.95025 * 1 2 3 26 26 H 1.09002 * 109.46907 * 180.93735 * 3 2 1 27 27 H 1.08995 * 109.47095 * 300.93524 * 3 2 1 28 28 H 1.08999 * 109.47360 * 60.93690 * 3 2 1 29 29 H 0.96702 * 113.99620 * 179.97438 * 6 4 2 30 30 H 1.09001 * 110.87445 * 311.74905 * 9 7 4 31 31 H 1.09000 * 110.30401 * 189.19913 * 9 7 4 32 32 H 1.09004 * 110.40323 * 240.81243 * 10 9 7 33 33 H 1.08995 * 110.50114 * 118.44746 * 10 9 7 34 34 H 0.97002 * 120.00047 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0689 -0.7761 1.2234 5 1 2.7130 -0.1357 1.8260 6 8 0.9872 -1.2758 2.0123 7 6 2.8873 -1.9547 0.6133 8 35 4.1879 -2.8102 1.8141 9 6 1.7790 -2.8995 -0.0206 10 6 1.2575 -2.1114 -1.2440 11 6 2.0735 -0.7827 -1.2341 12 6 2.1083 -0.0214 -2.5342 13 1 2.3504 1.0311 -2.5372 14 6 1.8310 -0.6684 -3.7196 15 7 1.6830 0.0243 -4.8278 16 14 1.6655 -2.5287 -3.7519 17 1 0.2800 -2.9091 -3.3765 18 1 1.9630 -3.0286 -5.1181 19 1 2.6220 -3.1276 -2.7865 20 6 3.4578 -1.2728 -0.6801 21 1 4.1216 -0.4409 -0.4447 22 35 4.3149 -2.5716 -1.8816 23 1 -0.3633 0.6032 0.8320 24 1 -0.3633 0.4189 -0.9384 25 1 -0.3633 -1.0221 0.1065 26 1 3.1543 1.4151 -0.0168 27 1 1.6965 1.9586 -0.8814 28 1 1.7237 1.9485 0.8982 29 1 1.2669 -1.7720 2.7938 30 1 0.9707 -3.0797 0.6880 31 1 2.2228 -3.8432 -0.3376 32 1 0.1927 -1.9042 -1.1368 33 1 1.4451 -2.6658 -2.1635 34 1 1.4882 -0.4310 -5.6619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085398933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:07 Heat of formation + Delta-G solvation = 8.988633 kcal Electronic energy + Delta-G solvation = -19517.023879 eV Core-core repulsion = 16544.483452 eV Total energy + Delta-G solvation = -2972.540428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 365.957 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69393 -35.74411 -33.16092 -32.56551 -30.62229 -29.91150 -28.51533 -27.88412 -26.20838 -24.18332 -23.54454 -21.06800 -19.19982 -17.93506 -17.01245 -16.37779 -15.95695 -15.08874 -14.56024 -13.90508 -13.70429 -12.85608 -12.58373 -12.18309 -12.15085 -11.81422 -11.71807 -11.52305 -11.36747 -11.24055 -11.04391 -10.58648 -10.38480 -10.28724 -10.18336 -9.89281 -9.79530 -9.53514 -9.46495 -9.28044 -9.04627 -8.91970 -8.50471 -7.21000 -6.19734 -4.24547 1.74902 2.39904 3.32984 3.48865 3.54655 4.25351 4.43988 4.54297 4.61852 4.80831 5.06710 5.38643 5.44631 5.61307 5.64679 5.73357 5.83484 5.98595 6.01375 6.17692 6.19253 6.29555 6.34490 6.47227 6.56628 6.62781 6.78753 6.85911 6.91955 7.09863 7.56224 7.75231 8.36283 8.82047 9.43881 10.89104 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.008801 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.134530 B = 3180.597932 C = 4278.568292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.129 4.129 4 C 0.126 3.874 5 H 0.063 0.937 6 O -0.544 6.544 7 C -0.072 4.072 8 Br -0.140 7.140 9 C -0.096 4.096 10 C -0.162 4.162 11 C 0.093 3.907 12 C -0.497 4.497 13 H 0.086 0.914 14 C 0.098 3.902 15 N -0.882 5.882 16 Si 0.790 3.210 17 H -0.294 1.294 18 H -0.311 1.311 19 H -0.155 1.155 20 C -0.044 4.044 21 H 0.106 0.894 22 Br -0.131 7.131 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.368 0.632 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -4.594 13.191 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.186 4.186 4 C 0.064 3.936 5 H 0.081 0.919 6 O -0.348 6.348 7 C -0.150 4.150 8 Br -0.057 7.057 9 C -0.135 4.135 10 C -0.198 4.198 11 C 0.091 3.909 12 C -0.533 4.533 13 H 0.104 0.896 14 C -0.108 4.108 15 N -0.516 5.516 16 Si 0.626 3.374 17 H -0.223 1.223 18 H -0.241 1.241 19 H -0.082 1.082 20 C -0.142 4.142 21 H 0.124 0.876 22 Br -0.050 7.050 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.214 0.786 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.721 -5.023 12.531 14.004 hybrid contribution -0.146 -0.833 0.308 0.900 sum 3.575 -5.857 12.839 14.557 Atomic orbital electron populations 1.21581 0.93516 1.01705 1.00863 1.21700 0.96849 0.94741 0.91858 1.21764 1.00248 0.95009 1.01584 1.23138 0.86940 0.90876 0.92624 0.91947 1.86612 1.33266 1.74355 1.40527 1.28140 0.94096 0.98637 0.94170 1.97275 1.60437 1.83028 1.64975 1.23125 0.95741 0.97161 0.97465 1.23763 1.01595 0.97694 0.96726 1.20768 0.85433 0.90862 0.93862 1.20224 1.49019 0.97135 0.86926 0.89632 1.24948 0.92521 0.98164 0.95191 1.69876 1.45580 1.36323 0.99840 0.88742 0.81860 0.88984 0.77776 1.22343 1.24111 1.08170 1.27642 1.02387 0.93689 0.90438 0.87576 1.97153 1.80826 1.60127 1.66862 0.93831 0.91948 0.91998 0.93229 0.90462 0.94087 0.78588 0.90048 0.91253 0.90038 0.91484 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 6.83 37.16 0.25 -1.82 16 2 C -0.05 -0.86 0.57 -152.12 -0.09 -0.95 16 3 C -0.13 -2.13 7.71 37.16 0.29 -1.84 16 4 C 0.13 1.88 3.33 -24.34 -0.08 1.80 16 5 H 0.06 0.89 7.72 -51.93 -0.40 0.48 16 6 O -0.54 -7.43 9.99 -35.23 -0.35 -7.78 16 7 C -0.07 -1.14 1.52 -83.68 -0.13 -1.26 16 8 Br -0.14 -1.96 33.98 -68.01 -2.31 -4.27 16 9 C -0.10 -1.61 5.43 -22.66 -0.12 -1.74 16 10 C -0.16 -3.21 3.39 -24.33 -0.08 -3.29 16 11 C 0.09 1.88 0.45 -150.39 -0.07 1.81 16 12 C -0.50 -12.27 8.81 -34.44 -0.30 -12.58 16 13 H 0.09 2.28 6.75 -52.49 -0.35 1.93 16 14 C 0.10 2.61 5.46 -17.82 -0.10 2.51 16 15 N -0.88 -25.54 13.96 55.43 0.77 -24.77 16 16 Si 0.79 19.04 22.45 -169.99 -3.82 15.22 16 17 H -0.29 -7.20 6.91 56.52 0.39 -6.81 16 18 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 19 H -0.15 -3.31 2.58 56.52 0.15 -3.17 16 20 C -0.04 -0.80 3.26 -22.45 -0.07 -0.87 16 21 H 0.11 1.92 7.23 -51.93 -0.38 1.55 16 22 Br -0.13 -2.52 27.10 -68.01 -1.84 -4.36 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.07 5.44 -51.93 -0.28 0.79 16 26 H 0.05 0.79 7.19 -51.93 -0.37 0.42 16 27 H 0.08 1.41 6.92 -51.93 -0.36 1.05 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.37 3.80 9.12 45.56 0.42 4.22 16 30 H 0.08 1.26 6.85 -51.93 -0.36 0.90 16 31 H 0.07 1.17 7.82 -51.93 -0.41 0.77 16 32 H 0.08 1.63 5.37 -51.93 -0.28 1.35 16 33 H 0.07 1.46 0.78 -51.93 -0.04 1.42 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 274.75 15.07 4.14 4.14 Total: -1.00 -27.08 274.75 -7.39 -34.47 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.48 Total: 5.56 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -0.50 Total: -18.23 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.77 Total: -24.77 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.35 Total: -7.78 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -3.82 Total: 15.22 kcal Atomic # 35 Polarization: -4.47 SS G_CDS: -4.15 Total: -8.63 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.08 -7.39 -34.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.462 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds