Wall clock time and date at job start Tue Mar 31 2020 07:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.44787 * 2 1 4 4 C 1.54578 * 110.40398 * 122.38938 * 2 1 3 5 5 H 1.08998 * 110.40371 * 237.70031 * 4 2 1 6 6 O 1.42906 * 110.40248 * 359.97438 * 4 2 1 7 7 C 1.55921 * 104.64417 * 118.79217 * 4 2 1 8 8 Br 1.96605 * 115.92344 * 160.84128 * 7 4 2 9 9 C 1.58834 * 103.85969 * 289.98633 * 7 4 2 10 10 C 1.54584 * 104.36063 * 70.61451 * 9 7 4 11 11 C 1.55923 * 110.40172 * 237.61489 * 2 1 3 12 12 C 1.50699 * 115.92630 * 81.17164 * 11 2 1 13 13 H 1.07996 * 119.99444 * 36.33857 * 12 11 2 14 14 C 1.37868 * 120.00224 * 216.33711 * 12 11 2 15 15 N 1.31521 * 120.00020 * 170.81284 * 14 12 11 16 16 Si 1.86799 * 120.00248 * 350.80985 * 14 12 11 17 17 H 1.48497 * 109.47310 * 84.64485 * 16 14 12 18 18 H 1.48494 * 109.47426 * 204.64645 * 16 14 12 19 19 H 1.48507 * 109.47104 * 324.64678 * 16 14 12 20 20 C 1.56947 * 100.65147 * 33.77844 * 7 4 2 21 21 H 1.08999 * 112.02551 * 63.17719 * 20 7 4 22 22 Br 1.96603 * 112.02808 * 189.69613 * 20 7 4 23 23 H 1.09004 * 109.46860 * 305.94280 * 1 2 3 24 24 H 1.09002 * 109.47164 * 65.94614 * 1 2 3 25 25 H 1.08998 * 109.47214 * 185.95025 * 1 2 3 26 26 H 1.09002 * 109.46907 * 180.93735 * 3 2 1 27 27 H 1.08995 * 109.47095 * 300.93524 * 3 2 1 28 28 H 1.08999 * 109.47360 * 60.93690 * 3 2 1 29 29 H 0.96702 * 113.99620 * 179.97438 * 6 4 2 30 30 H 1.09001 * 110.87445 * 311.74905 * 9 7 4 31 31 H 1.09000 * 110.30401 * 189.19913 * 9 7 4 32 32 H 1.09004 * 110.40323 * 240.81243 * 10 9 7 33 33 H 1.08995 * 110.50114 * 118.44746 * 10 9 7 34 34 H 0.97002 * 120.00047 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0689 -0.7761 1.2234 5 1 2.7130 -0.1357 1.8260 6 8 0.9872 -1.2758 2.0123 7 6 2.8873 -1.9547 0.6133 8 35 4.1879 -2.8102 1.8141 9 6 1.7790 -2.8995 -0.0206 10 6 1.2575 -2.1114 -1.2440 11 6 2.0735 -0.7827 -1.2341 12 6 2.1083 -0.0214 -2.5342 13 1 2.3504 1.0311 -2.5372 14 6 1.8310 -0.6684 -3.7196 15 7 1.6830 0.0243 -4.8278 16 14 1.6655 -2.5287 -3.7519 17 1 0.2800 -2.9091 -3.3765 18 1 1.9630 -3.0286 -5.1181 19 1 2.6220 -3.1276 -2.7865 20 6 3.4578 -1.2728 -0.6801 21 1 4.1216 -0.4409 -0.4447 22 35 4.3149 -2.5716 -1.8816 23 1 -0.3633 0.6032 0.8320 24 1 -0.3633 0.4189 -0.9384 25 1 -0.3633 -1.0221 0.1065 26 1 3.1543 1.4151 -0.0168 27 1 1.6965 1.9586 -0.8814 28 1 1.7237 1.9485 0.8982 29 1 1.2669 -1.7720 2.7938 30 1 0.9707 -3.0797 0.6880 31 1 2.2228 -3.8432 -0.3376 32 1 0.1927 -1.9042 -1.1368 33 1 1.4451 -2.6658 -2.1635 34 1 1.4882 -0.4310 -5.6619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085398933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:04 Heat of formation + Delta-G solvation = -9.085472 kcal Electronic energy + Delta-G solvation = -19517.807631 eV Core-core repulsion = 16544.483452 eV Total energy + Delta-G solvation = -2973.324180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 365.957 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -42.11682 -36.94760 -34.66551 -34.39638 -32.02056 -31.43750 -29.89377 -29.54706 -27.57327 -25.69812 -25.16545 -22.59650 -20.56910 -19.55725 -18.26609 -18.02301 -17.54761 -16.63519 -16.02342 -15.51359 -15.09983 -14.52976 -14.06737 -13.78973 -13.59626 -13.45275 -13.11058 -13.00105 -12.72973 -12.72003 -12.49839 -12.15534 -12.03825 -11.78986 -11.49200 -11.38708 -11.18556 -11.07191 -10.91151 -10.87595 -10.64532 -10.43536 -10.29194 -8.93981 -8.27495 -6.31812 0.48087 0.87240 1.35338 1.52922 1.54209 2.43979 2.90382 3.04628 3.21575 3.40937 3.60466 3.95107 4.07200 4.19670 4.22763 4.26164 4.44886 4.52534 4.53709 4.77070 4.84303 4.86632 4.96887 5.07814 5.16695 5.20507 5.32225 5.40525 5.50623 5.67287 5.69405 6.32716 6.76244 6.85725 7.38809 8.83519 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.008801 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.134530 B = 3180.597932 C = 4278.568292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.127 4.127 4 C 0.141 3.859 5 H 0.084 0.916 6 O -0.545 6.545 7 C -0.063 4.063 8 Br -0.106 7.106 9 C -0.091 4.091 10 C -0.166 4.166 11 C 0.076 3.924 12 C -0.478 4.478 13 H 0.056 0.944 14 C 0.048 3.952 15 N -0.936 5.936 16 Si 0.811 3.189 17 H -0.304 1.304 18 H -0.342 1.342 19 H -0.101 1.101 20 C -0.042 4.042 21 H 0.113 0.887 22 Br -0.136 7.136 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.388 0.612 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -5.794 17.232 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.184 4.184 4 C 0.079 3.921 5 H 0.102 0.898 6 O -0.352 6.352 7 C -0.141 4.141 8 Br -0.023 7.023 9 C -0.129 4.129 10 C -0.202 4.202 11 C 0.074 3.926 12 C -0.514 4.514 13 H 0.074 0.926 14 C -0.151 4.151 15 N -0.575 5.575 16 Si 0.650 3.350 17 H -0.234 1.234 18 H -0.275 1.275 19 H -0.028 1.028 20 C -0.139 4.139 21 H 0.131 0.869 22 Br -0.055 7.055 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.237 0.763 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.537 -6.236 16.632 18.333 hybrid contribution -0.387 -0.381 -0.828 0.990 sum 4.150 -6.616 15.804 17.628 Atomic orbital electron populations 1.21516 0.93602 1.01911 1.00115 1.21626 0.96791 0.95127 0.91783 1.21723 1.00472 0.94568 1.01609 1.22855 0.87065 0.90317 0.91839 0.89811 1.86575 1.32624 1.74668 1.41340 1.27940 0.93890 0.98732 0.93577 1.97315 1.59277 1.82452 1.63303 1.23093 0.96695 0.96723 0.96408 1.23683 1.01567 0.97544 0.97416 1.20658 0.87255 0.91533 0.93159 1.20414 1.46115 0.96162 0.88748 0.92570 1.25542 0.93322 1.01060 0.95211 1.70013 1.49597 1.37450 1.00427 0.88676 0.82717 0.86441 0.77123 1.23369 1.27457 1.02830 1.27429 1.00891 0.94220 0.91370 0.86896 1.97130 1.80276 1.60429 1.67711 0.91911 0.94810 0.91821 0.92772 0.93317 0.91310 0.76257 0.87913 0.90955 0.90503 0.93531 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.75 6.83 71.98 0.49 -3.26 16 2 C -0.05 -1.66 0.57 -50.63 -0.03 -1.69 16 3 C -0.13 -3.94 7.71 71.98 0.55 -3.39 16 4 C 0.14 3.57 3.33 32.14 0.11 3.68 16 5 H 0.08 1.88 7.72 -2.39 -0.02 1.86 16 6 O -0.55 -11.99 9.99 -148.98 -1.49 -13.47 16 7 C -0.06 -1.71 1.52 -6.30 -0.01 -1.72 16 8 Br -0.11 -2.47 33.98 -20.37 -0.69 -3.16 16 9 C -0.09 -2.70 5.43 33.23 0.18 -2.51 16 10 C -0.17 -6.31 3.39 32.15 0.11 -6.20 16 11 C 0.08 2.98 0.45 -49.52 -0.02 2.96 16 12 C -0.48 -24.18 8.81 25.60 0.23 -23.96 16 13 H 0.06 3.13 6.75 -2.91 -0.02 3.11 16 14 C 0.05 2.69 5.46 84.65 0.46 3.16 16 15 N -0.94 -57.45 13.96 21.44 0.30 -57.15 16 16 Si 0.81 39.83 22.45 68.60 1.54 41.37 16 17 H -0.30 -15.11 6.91 99.48 0.69 -14.42 16 18 H -0.34 -18.43 7.11 99.48 0.71 -17.72 16 19 H -0.10 -4.22 2.58 99.48 0.26 -3.96 16 20 C -0.04 -1.42 3.26 33.37 0.11 -1.31 16 21 H 0.11 3.75 7.23 -2.39 -0.02 3.73 16 22 Br -0.14 -4.96 27.10 -20.37 -0.55 -5.51 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 2.05 5.44 -2.39 -0.01 2.04 16 26 H 0.05 1.61 7.19 -2.39 -0.02 1.59 16 27 H 0.05 1.78 6.92 -2.39 -0.02 1.76 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.39 5.61 9.12 -74.06 -0.68 4.94 16 30 H 0.10 2.68 6.85 -2.39 -0.02 2.66 16 31 H 0.07 2.14 7.82 -2.39 -0.02 2.13 16 32 H 0.08 2.99 5.37 -2.39 -0.01 2.97 16 33 H 0.05 1.99 0.78 -2.39 0.00 1.99 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -61.23 274.75 1.28 -59.95 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.00 Total: 12.22 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 2.18 Total: -34.24 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.30 Total: -57.15 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.49 Total: -13.47 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.54 Total: 41.37 kcal Atomic # 35 Polarization: -7.42 SS G_CDS: -1.24 Total: -8.67 kcal Total: -61.23 1.28 -59.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.864 kcal (2) G-P(sol) polarization free energy of solvation -61.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds