Wall clock time and date at job start Tue Mar 31 2020 07:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47037 * 2 1 4 4 C 1.50699 * 109.47333 * 120.00468 * 2 1 3 5 5 H 1.07994 * 120.00236 * 119.99988 * 4 2 1 6 6 C 1.37883 * 119.99690 * 299.99774 * 4 2 1 7 7 N 1.31515 * 119.99990 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46910 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46965 * 120.00082 * 8 6 4 11 11 H 1.48499 * 109.47061 * 240.00235 * 8 6 4 12 12 N 1.46502 * 109.46857 * 240.00238 * 2 1 3 13 13 C 1.46494 * 120.00284 * 299.99818 * 12 2 1 14 14 C 1.34775 * 120.00071 * 120.00141 * 12 2 1 15 15 O 1.21599 * 119.99759 * 359.97438 * 14 12 2 16 16 N 1.34772 * 120.00287 * 179.97438 * 14 12 2 17 17 C 1.40204 * 119.99962 * 174.36935 * 16 14 12 18 18 C 1.38645 * 120.09478 * 335.24135 * 17 16 14 19 19 C 1.38340 * 119.99724 * 179.71989 * 18 17 16 20 20 Cl 1.73596 * 119.91674 * 180.29591 * 19 18 17 21 21 C 1.38375 * 120.16415 * 0.57427 * 19 18 17 22 22 C 1.38234 * 120.17743 * 359.67704 * 21 19 18 23 23 C 1.38688 * 120.00774 * 0.04625 * 22 21 19 24 24 N 1.39996 * 120.08607 * 179.97438 * 23 22 21 25 25 C 1.46850 * 110.99760 * 64.18767 * 24 23 22 26 26 C 1.53045 * 109.51966 * 174.16424 * 25 24 23 27 27 C 1.53112 * 109.27962 * 59.18007 * 26 25 24 28 28 C 1.53126 * 109.16119 * 302.34304 * 27 26 25 29 29 C 1.46847 * 110.99982 * 299.98027 * 24 23 22 30 30 H 1.08999 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47120 * 300.00066 * 1 2 3 32 32 H 1.09000 * 109.47101 * 59.99263 * 1 2 3 33 33 H 0.96998 * 120.00300 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47035 * 89.99640 * 13 12 2 35 35 H 1.09001 * 109.47501 * 210.00311 * 13 12 2 36 36 H 1.09001 * 109.47122 * 330.00276 * 13 12 2 37 37 H 0.96995 * 120.00079 * 354.37974 * 16 14 12 38 38 H 1.08009 * 120.00196 * 359.97287 * 18 17 16 39 39 H 1.08002 * 119.91023 * 179.70387 * 21 19 18 40 40 H 1.08004 * 119.99619 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.46256 * 294.17159 * 25 24 23 42 42 H 1.08993 * 109.46159 * 54.14715 * 25 24 23 43 43 H 1.09003 * 109.50052 * 299.23500 * 26 25 24 44 44 H 1.08999 * 109.52934 * 179.13833 * 26 25 24 45 45 H 1.09002 * 109.52605 * 182.44140 * 27 26 25 46 46 H 1.09001 * 109.57680 * 62.27980 * 27 26 25 47 47 H 1.08995 * 109.50195 * 297.71644 * 28 27 26 48 48 H 1.08999 * 109.53197 * 177.61640 * 28 27 26 49 49 H 1.08999 * 109.45873 * 305.85453 * 29 24 23 50 50 H 1.08997 * 109.46467 * 65.83009 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1465 -2.2871 3.6036 10 1 3.1467 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1287 -1.8911 16 7 3.2428 -0.6710 -3.1836 17 6 3.9488 0.0399 -4.1643 18 6 3.7645 1.4074 -4.2996 19 6 4.4665 2.1078 -5.2642 20 17 4.2399 3.8212 -5.4266 21 6 5.3446 1.4451 -6.1036 22 6 5.5298 0.0810 -5.9783 23 6 4.8341 -0.6275 -5.0101 24 7 5.0200 -2.0091 -4.8821 25 6 6.3982 -2.3197 -4.4811 26 6 6.5260 -3.8205 -4.2103 27 6 6.1563 -4.5962 -5.4776 28 6 4.7342 -4.2182 -5.9013 29 6 4.6583 -2.7059 -6.1231 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.7082 1.1608 3.4844 34 1 0.7375 -2.1442 -1.9994 35 1 2.4629 -2.5818 -1.9865 36 1 1.5295 -2.5968 -0.4710 37 1 3.0778 -1.6201 -3.2970 38 1 3.0759 1.9265 -3.6492 39 1 5.8869 1.9952 -6.8583 40 1 6.2162 -0.4333 -6.6348 41 1 7.0819 -2.0355 -5.2810 42 1 6.6469 -1.7649 -3.5765 43 1 5.8525 -4.1030 -3.4012 44 1 7.5525 -4.0536 -3.9275 45 1 6.2041 -5.6665 -5.2766 46 1 6.8535 -4.3441 -6.2766 47 1 4.0325 -4.5069 -5.1188 48 1 4.4801 -4.7350 -6.8267 49 1 3.6434 -2.4316 -6.4110 50 1 5.3503 -2.4200 -6.9152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:21 Heat of formation + Delta-G solvation = 3.864618 kcal Electronic energy + Delta-G solvation = -31731.381300 eV Core-core repulsion = 27591.584502 eV Total energy + Delta-G solvation = -4139.796798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.80805 -39.46793 -38.03697 -36.41926 -35.54218 -34.34393 -33.65909 -32.78197 -31.09072 -30.14270 -29.26143 -28.33103 -26.15949 -25.22042 -24.61029 -23.31795 -23.26964 -21.75826 -21.00316 -19.83011 -19.13216 -18.10037 -17.18073 -16.94336 -16.27068 -15.69274 -15.39454 -15.20330 -14.96653 -14.81078 -14.71516 -14.16051 -13.93466 -13.83119 -13.79012 -13.40956 -13.29443 -13.09698 -12.67794 -12.53066 -12.49861 -12.27920 -11.98833 -11.65500 -11.51132 -11.47936 -11.43336 -11.06487 -11.01529 -10.88628 -10.85320 -10.69957 -10.68138 -10.63867 -10.26937 -10.17580 -10.15306 -9.32655 -9.15491 -8.74134 -8.59363 -8.43200 -7.96615 -7.52287 -6.07678 -4.15392 1.07896 1.34444 2.19780 3.14830 3.25962 3.34341 3.37189 3.44331 3.58163 3.95914 4.35579 4.52220 4.53150 4.62414 4.65547 4.78425 4.97975 5.03945 5.12040 5.22706 5.23882 5.27498 5.34900 5.42230 5.48643 5.60190 5.62033 5.66607 5.66721 5.78124 5.85953 5.87824 5.96814 5.99836 6.10606 6.21910 6.27126 6.32777 6.53785 6.70449 6.75975 6.80289 6.91455 7.02369 7.16257 7.31935 7.45542 7.68366 7.82586 8.06244 8.20760 8.61122 8.85249 9.16996 9.51378 10.97681 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.003344 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.161830 B = 8371.798608 C =10851.592384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.600 5.600 13 C 0.084 3.916 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.677 5.677 17 C 0.227 3.773 18 C -0.125 4.125 19 C -0.010 4.010 20 Cl -0.071 7.071 21 C -0.137 4.137 22 C -0.114 4.114 23 C 0.042 3.958 24 N -0.498 5.498 25 C 0.063 3.937 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.117 4.117 29 C 0.059 3.941 30 H 0.029 0.971 31 H 0.094 0.906 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.412 0.588 38 H 0.166 0.834 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.037 0.963 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.202 -8.461 -20.249 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.396 3.604 15 O -0.456 6.456 16 N -0.324 5.324 17 C 0.126 3.874 18 C -0.147 4.147 19 C -0.037 4.037 20 Cl -0.043 7.043 21 C -0.158 4.158 22 C -0.134 4.134 23 C -0.056 4.056 24 N -0.220 5.220 25 C -0.064 4.064 26 C -0.156 4.156 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.068 4.068 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.251 0.749 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.881 -7.599 -19.448 22.318 hybrid contribution 0.801 -0.595 0.191 1.016 sum 8.681 -8.193 -19.257 22.657 Atomic orbital electron populations 1.22100 0.98118 0.99411 1.00864 1.18919 0.90693 0.94356 0.78868 0.91657 1.21359 1.31777 1.13057 0.90267 0.92200 1.24879 0.94940 0.94975 0.98928 1.69886 1.36325 1.22592 1.23676 0.86444 0.78579 0.79587 0.82794 1.19843 1.20920 1.20946 1.47621 1.50289 1.11609 1.23833 1.21564 0.98438 0.83420 1.02650 1.16044 0.79708 0.85102 0.79564 1.90846 1.62460 1.15502 1.76760 1.42931 1.56947 1.13187 1.19319 1.17235 0.91086 0.90414 0.88618 1.21422 1.01908 0.93007 0.98320 1.20729 0.99769 0.84975 0.98261 1.98361 1.96344 1.12332 1.97222 1.20740 1.00260 0.94135 1.00642 1.21190 0.99752 0.93869 0.98624 1.18392 0.98793 0.89334 0.99043 1.59418 1.25010 1.04564 1.32969 1.22139 0.86995 0.96750 1.00493 1.21608 1.01707 0.93898 0.98364 1.21580 0.96682 0.99957 0.97643 1.21606 0.97526 0.94596 1.01797 1.22179 1.00970 0.94088 0.89539 0.95175 0.88729 0.96962 0.92717 0.93788 0.93307 0.89643 0.74919 0.81707 0.85364 0.85575 0.94486 0.90385 0.90771 0.91395 0.91767 0.92394 0.90838 0.91451 0.90563 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.27 6.85 2.64 -69.08 -0.18 6.67 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.02 7.99 -34.44 -0.28 -14.29 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.60 -12.62 2.75 -181.01 -0.50 -13.12 16 13 C 0.08 1.37 9.25 59.84 0.55 1.92 16 14 C 0.69 14.49 8.09 -86.92 -0.70 13.78 16 15 O -0.58 -14.11 12.84 5.28 0.07 -14.04 16 16 N -0.68 -11.09 5.16 -14.07 -0.07 -11.16 16 17 C 0.23 3.52 6.45 -83.43 -0.54 2.98 16 18 C -0.12 -2.07 8.50 -39.39 -0.33 -2.40 16 19 C -0.01 -0.14 6.32 -39.49 -0.25 -0.39 16 20 Cl -0.07 -0.97 28.95 -51.86 -1.50 -2.47 16 21 C -0.14 -1.61 9.82 -39.53 -0.39 -1.99 16 22 C -0.11 -1.25 8.70 -39.42 -0.34 -1.59 16 23 C 0.04 0.52 4.71 -83.51 -0.39 0.13 16 24 N -0.50 -5.27 3.96 -170.95 -0.68 -5.95 16 25 C 0.06 0.62 5.17 -3.83 -0.02 0.60 16 26 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 27 C -0.12 -0.85 6.00 -26.61 -0.16 -1.01 16 28 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 29 C 0.06 0.50 5.12 -3.84 -0.02 0.48 16 30 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.66 6.29 -51.93 -0.33 0.33 16 36 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 37 H 0.41 5.83 5.96 -40.82 -0.24 5.58 16 38 H 0.17 3.21 5.79 -52.48 -0.30 2.91 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.11 7.13 -52.48 -0.37 0.73 16 41 H 0.04 0.33 7.56 -51.93 -0.39 -0.06 16 42 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 50 H 0.04 0.30 7.34 -51.93 -0.38 -0.08 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -29.85 403.80 -11.75 -41.60 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.62 Total: 6.16 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -3.14 Total: 1.28 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.62 Total: -54.49 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.85 -11.75 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.465 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds