Wall clock time and date at job start Tue Mar 31 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47037 * 2 1 4 4 C 1.50699 * 109.47333 * 120.00468 * 2 1 3 5 5 H 1.07994 * 120.00236 * 119.99988 * 4 2 1 6 6 C 1.37883 * 119.99690 * 299.99774 * 4 2 1 7 7 N 1.31515 * 119.99990 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46910 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46965 * 120.00082 * 8 6 4 11 11 H 1.48499 * 109.47061 * 240.00235 * 8 6 4 12 12 N 1.46502 * 109.46857 * 240.00238 * 2 1 3 13 13 C 1.46494 * 120.00284 * 299.99818 * 12 2 1 14 14 C 1.34775 * 120.00071 * 120.00141 * 12 2 1 15 15 O 1.21599 * 119.99759 * 359.97438 * 14 12 2 16 16 N 1.34772 * 120.00287 * 179.97438 * 14 12 2 17 17 C 1.40204 * 119.99962 * 174.36935 * 16 14 12 18 18 C 1.38645 * 120.09478 * 335.24135 * 17 16 14 19 19 C 1.38340 * 119.99724 * 179.71989 * 18 17 16 20 20 Cl 1.73596 * 119.91674 * 180.29591 * 19 18 17 21 21 C 1.38375 * 120.16415 * 0.57427 * 19 18 17 22 22 C 1.38234 * 120.17743 * 359.67704 * 21 19 18 23 23 C 1.38688 * 120.00774 * 0.04625 * 22 21 19 24 24 N 1.39996 * 120.08607 * 179.97438 * 23 22 21 25 25 C 1.46850 * 110.99760 * 64.18767 * 24 23 22 26 26 C 1.53045 * 109.51966 * 174.16424 * 25 24 23 27 27 C 1.53112 * 109.27962 * 59.18007 * 26 25 24 28 28 C 1.53126 * 109.16119 * 302.34304 * 27 26 25 29 29 C 1.46847 * 110.99982 * 299.98027 * 24 23 22 30 30 H 1.08999 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47120 * 300.00066 * 1 2 3 32 32 H 1.09000 * 109.47101 * 59.99263 * 1 2 3 33 33 H 0.96998 * 120.00300 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47035 * 89.99640 * 13 12 2 35 35 H 1.09001 * 109.47501 * 210.00311 * 13 12 2 36 36 H 1.09001 * 109.47122 * 330.00276 * 13 12 2 37 37 H 0.96995 * 120.00079 * 354.37974 * 16 14 12 38 38 H 1.08009 * 120.00196 * 359.97287 * 18 17 16 39 39 H 1.08002 * 119.91023 * 179.70387 * 21 19 18 40 40 H 1.08004 * 119.99619 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.46256 * 294.17159 * 25 24 23 42 42 H 1.08993 * 109.46159 * 54.14715 * 25 24 23 43 43 H 1.09003 * 109.50052 * 299.23500 * 26 25 24 44 44 H 1.08999 * 109.52934 * 179.13833 * 26 25 24 45 45 H 1.09002 * 109.52605 * 182.44140 * 27 26 25 46 46 H 1.09001 * 109.57680 * 62.27980 * 27 26 25 47 47 H 1.08995 * 109.50195 * 297.71644 * 28 27 26 48 48 H 1.08999 * 109.53197 * 177.61640 * 28 27 26 49 49 H 1.08999 * 109.45873 * 305.85453 * 29 24 23 50 50 H 1.08997 * 109.46467 * 65.83009 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1465 -2.2871 3.6036 10 1 3.1467 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1287 -1.8911 16 7 3.2428 -0.6710 -3.1836 17 6 3.9488 0.0399 -4.1643 18 6 3.7645 1.4074 -4.2996 19 6 4.4665 2.1078 -5.2642 20 17 4.2399 3.8212 -5.4266 21 6 5.3446 1.4451 -6.1036 22 6 5.5298 0.0810 -5.9783 23 6 4.8341 -0.6275 -5.0101 24 7 5.0200 -2.0091 -4.8821 25 6 6.3982 -2.3197 -4.4811 26 6 6.5260 -3.8205 -4.2103 27 6 6.1563 -4.5962 -5.4776 28 6 4.7342 -4.2182 -5.9013 29 6 4.6583 -2.7059 -6.1231 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.7082 1.1608 3.4844 34 1 0.7375 -2.1442 -1.9994 35 1 2.4629 -2.5818 -1.9865 36 1 1.5295 -2.5968 -0.4710 37 1 3.0778 -1.6201 -3.2970 38 1 3.0759 1.9265 -3.6492 39 1 5.8869 1.9952 -6.8583 40 1 6.2162 -0.4333 -6.6348 41 1 7.0819 -2.0355 -5.2810 42 1 6.6469 -1.7649 -3.5765 43 1 5.8525 -4.1030 -3.4012 44 1 7.5525 -4.0536 -3.9275 45 1 6.2041 -5.6665 -5.2766 46 1 6.8535 -4.3441 -6.2766 47 1 4.0325 -4.5069 -5.1188 48 1 4.4801 -4.7350 -6.8267 49 1 3.6434 -2.4316 -6.4110 50 1 5.3503 -2.4200 -6.9152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086280934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:19 Heat of formation + Delta-G solvation = -11.834308 kcal Electronic energy + Delta-G solvation = -31732.062056 eV Core-core repulsion = 27591.584502 eV Total energy + Delta-G solvation = -4140.477555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.161 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.00886 -40.72095 -39.01721 -37.60184 -37.14851 -35.79636 -34.66355 -34.46643 -31.74265 -31.68447 -30.57107 -29.50716 -27.64086 -27.28920 -25.41113 -24.58131 -23.94927 -22.96351 -22.38339 -20.76623 -20.46637 -19.42740 -18.65674 -18.16707 -17.92445 -17.11324 -16.78258 -16.32763 -16.24382 -15.96112 -15.72176 -15.43077 -15.03311 -14.94557 -14.70882 -14.56563 -14.39388 -14.14049 -14.12646 -13.98310 -13.55705 -13.30391 -13.18456 -13.09474 -13.05643 -12.87200 -12.72560 -12.60144 -12.53178 -12.19922 -12.10967 -12.10004 -11.97599 -11.58233 -11.46296 -11.29952 -11.27893 -11.16412 -10.93984 -10.51367 -9.73552 -9.49502 -9.46769 -8.92209 -8.13468 -6.29628 0.02194 0.25165 1.11278 1.41381 1.43159 1.54006 1.71849 2.08677 2.42400 2.63389 2.74566 3.06539 3.14883 3.79071 3.91977 4.01680 4.04128 4.10156 4.23693 4.29297 4.34460 4.37680 4.46743 4.58666 4.61318 4.67478 4.72163 4.75982 4.79025 4.90508 4.92995 4.95608 4.97669 5.04075 5.06813 5.15048 5.19539 5.25248 5.29337 5.33518 5.40911 5.44533 5.52375 5.55933 5.66992 5.73575 5.97187 6.03705 6.16014 6.25355 6.35386 6.77811 7.05780 7.37054 7.60038 8.91084 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.003344 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.161830 B = 8371.798608 C =10851.592384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.279 3.721 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.608 5.608 13 C 0.082 3.918 14 C 0.689 3.311 15 O -0.623 6.623 16 N -0.659 5.659 17 C 0.196 3.804 18 C -0.148 4.148 19 C -0.022 4.022 20 Cl -0.073 7.073 21 C -0.121 4.121 22 C -0.103 4.103 23 C 0.058 3.942 24 N -0.508 5.508 25 C 0.063 3.937 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.114 4.114 29 C 0.058 3.942 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.423 0.577 38 H 0.126 0.874 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 -11.398 -22.589 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.177 3.823 3 H 0.029 0.971 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.342 5.342 13 C -0.061 4.061 14 C 0.391 3.609 15 O -0.504 6.504 16 N -0.308 5.308 17 C 0.098 3.902 18 C -0.170 4.170 19 C -0.049 4.049 20 Cl -0.044 7.044 21 C -0.141 4.141 22 C -0.123 4.123 23 C -0.039 4.039 24 N -0.231 5.231 25 C -0.063 4.063 26 C -0.153 4.153 27 C -0.154 4.154 28 C -0.152 4.152 29 C -0.067 4.067 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.264 0.736 38 H 0.144 0.856 39 H 0.176 0.824 40 H 0.180 0.820 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.647 -10.592 -21.848 26.126 hybrid contribution 0.319 0.340 0.801 0.926 sum 9.965 -10.252 -21.047 25.444 Atomic orbital electron populations 1.21879 0.97036 1.00168 0.99906 1.18478 0.91419 0.91996 0.80453 0.97105 1.21599 1.31799 1.13070 0.91052 0.92075 1.25710 0.95080 0.95629 1.01932 1.70028 1.37307 1.23891 1.24353 0.85413 0.78207 0.78473 0.78942 1.18890 1.21320 1.19909 1.47468 1.50521 1.13308 1.22859 1.21775 1.00631 0.80666 1.02993 1.16200 0.79599 0.84649 0.80431 1.90824 1.63997 1.17655 1.77948 1.42551 1.56638 1.13376 1.18191 1.17458 0.92855 0.90336 0.89584 1.21170 1.02737 0.93863 0.99239 1.20834 1.00476 0.85020 0.98607 1.98355 1.96441 1.12454 1.97186 1.21097 0.98620 0.94591 0.99825 1.21563 0.99208 0.93529 0.98019 1.18479 0.97171 0.90475 0.97801 1.59404 1.25738 1.03381 1.34563 1.22144 0.86676 0.97568 0.99918 1.21590 1.02012 0.92899 0.98801 1.21561 0.96627 1.00200 0.97025 1.21602 0.97553 0.93649 1.02403 1.22262 1.01081 0.94691 0.88712 0.93348 0.91230 0.96305 0.92653 0.91597 0.90304 0.90478 0.73639 0.85580 0.82378 0.82014 0.92929 0.92818 0.92179 0.90445 0.90924 0.91354 0.91708 0.89714 0.90932 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.97 71.98 0.65 -5.75 16 2 C 0.28 14.70 2.64 44.25 0.12 14.82 16 3 H 0.01 0.69 6.90 -2.39 -0.02 0.68 16 4 C -0.54 -29.29 7.99 25.60 0.20 -29.09 16 5 H 0.06 3.25 7.33 -2.91 -0.02 3.22 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -53.14 11.32 21.45 0.24 -52.89 16 8 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.61 -26.35 2.75 -844.84 -2.33 -28.68 16 13 C 0.08 2.61 9.25 127.77 1.18 3.79 16 14 C 0.69 30.17 8.09 179.06 1.45 31.62 16 15 O -0.62 -32.84 12.84 -4.03 -0.05 -32.89 16 16 N -0.66 -22.00 5.16 -316.69 -1.63 -23.63 16 17 C 0.20 6.16 6.45 38.19 0.25 6.41 16 18 C -0.15 -5.14 8.50 22.39 0.19 -4.95 16 19 C -0.02 -0.63 6.32 22.33 0.14 -0.48 16 20 Cl -0.07 -2.02 28.95 -2.72 -0.08 -2.10 16 21 C -0.12 -2.53 9.82 22.30 0.22 -2.31 16 22 C -0.10 -1.92 8.70 22.38 0.19 -1.73 16 23 C 0.06 1.35 4.71 38.23 0.18 1.53 16 24 N -0.51 -9.57 3.96 -694.75 -2.75 -12.32 16 25 C 0.06 1.09 5.17 86.33 0.45 1.54 16 26 C -0.12 -1.62 6.09 30.65 0.19 -1.43 16 27 C -0.12 -1.21 6.00 30.67 0.18 -1.03 16 28 C -0.11 -1.26 6.09 30.65 0.19 -1.07 16 29 C 0.06 0.80 5.12 86.33 0.44 1.24 16 30 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 31 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.00 6.29 -2.39 -0.02 1.99 16 36 H 0.08 2.61 7.02 -2.39 -0.02 2.59 16 37 H 0.42 11.69 5.96 -92.71 -0.55 11.14 16 38 H 0.13 5.40 5.79 -2.91 -0.02 5.38 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.16 1.95 7.13 -2.91 -0.02 1.93 16 41 H 0.05 0.75 7.56 -2.39 -0.02 0.73 16 42 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 50 H 0.05 0.58 7.34 -2.39 -0.02 0.56 16 Total: -1.00 -69.71 403.80 2.50 -67.21 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.40 Total: 25.60 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.66 Total: 14.43 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -6.47 Total: -117.52 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.05 Total: -32.89 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -69.71 2.50 -67.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.379 kcal (2) G-P(sol) polarization free energy of solvation -69.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds