Wall clock time and date at job start Tue Mar 31 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46552 * 2 1 4 4 C 1.50695 * 109.46774 * 240.00368 * 2 1 3 5 5 H 1.07997 * 119.99997 * 239.99808 * 4 2 1 6 6 C 1.37876 * 120.00298 * 59.99688 * 4 2 1 7 7 N 1.31520 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00293 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47604 * 270.00403 * 8 6 4 10 10 H 1.48507 * 109.47293 * 30.00199 * 8 6 4 11 11 H 1.48498 * 109.47461 * 149.99947 * 8 6 4 12 12 N 1.46496 * 109.47137 * 120.00316 * 2 1 3 13 13 C 1.46500 * 120.00312 * 59.99815 * 12 2 1 14 14 C 1.34779 * 119.99697 * 240.00048 * 12 2 1 15 15 O 1.21589 * 119.99883 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00015 * 180.02562 * 14 12 2 17 17 C 1.40196 * 120.00082 * 174.37377 * 16 14 12 18 18 C 1.38651 * 120.08935 * 335.22778 * 17 16 14 19 19 C 1.38344 * 119.99274 * 179.77351 * 18 17 16 20 20 Cl 1.73594 * 119.91598 * 180.27940 * 19 18 17 21 21 C 1.38372 * 120.16715 * 0.53002 * 19 18 17 22 22 C 1.38234 * 120.18135 * 359.69973 * 21 19 18 23 23 C 1.38702 * 120.00193 * 0.04846 * 22 21 19 24 24 N 1.39992 * 120.08103 * 179.97438 * 23 22 21 25 25 C 1.46854 * 110.99789 * 64.19131 * 24 23 22 26 26 C 1.53038 * 109.51942 * 174.15886 * 25 24 23 27 27 C 1.53112 * 109.28204 * 59.17718 * 26 25 24 28 28 C 1.53119 * 109.16177 * 302.34771 * 27 26 25 29 29 C 1.46846 * 111.00252 * 299.97771 * 24 23 22 30 30 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46890 * 299.99792 * 1 2 3 32 32 H 1.08992 * 109.47218 * 59.99510 * 1 2 3 33 33 H 0.97001 * 120.00186 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47006 * 89.99943 * 13 12 2 35 35 H 1.08991 * 109.47120 * 210.00074 * 13 12 2 36 36 H 1.08998 * 109.46695 * 330.00467 * 13 12 2 37 37 H 0.96997 * 119.99611 * 354.36827 * 16 14 12 38 38 H 1.08003 * 120.00601 * 359.97438 * 18 17 16 39 39 H 1.08004 * 119.91131 * 179.72907 * 21 19 18 40 40 H 1.08000 * 120.00259 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.45984 * 294.16901 * 25 24 23 42 42 H 1.08996 * 109.46104 * 54.14183 * 25 24 23 43 43 H 1.09003 * 109.50482 * 299.23421 * 26 25 24 44 44 H 1.09009 * 109.53463 * 179.13790 * 26 25 24 45 45 H 1.08994 * 109.52688 * 182.43647 * 27 26 25 46 46 H 1.09008 * 109.57656 * 62.27793 * 27 26 25 47 47 H 1.09002 * 109.49601 * 297.70881 * 28 27 26 48 48 H 1.09003 * 109.53772 * 177.61813 * 28 27 26 49 49 H 1.09003 * 109.46186 * 305.85585 * 29 24 23 50 50 H 1.08995 * 109.45758 * 65.83756 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1193 -4.0080 9 1 3.6304 -0.5438 -4.4120 10 1 2.4879 -2.5652 -3.7124 11 1 1.3442 -0.9488 -5.1123 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 3.0873 1.1283 1.8906 16 7 3.2430 -0.6711 3.1835 17 6 4.1434 -0.0290 4.0451 18 6 4.9593 0.9853 3.5676 19 6 5.8438 1.6208 4.4206 20 17 6.8592 2.8953 3.8224 21 6 5.9248 1.2395 5.7483 22 6 5.1181 0.2260 6.2308 23 6 4.2250 -0.4126 5.3831 24 7 3.4076 -1.4396 5.8699 25 6 2.4748 -0.9334 6.8849 26 6 1.5038 -2.0459 7.2871 27 6 2.2964 -3.2326 7.8419 28 6 3.2941 -3.7098 6.7829 29 6 4.2132 -2.5492 6.3952 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.7093 1.1620 -3.4844 34 1 2.4158 -2.7377 0.9716 35 1 1.6239 -2.2852 2.5000 36 1 0.6905 -2.3002 0.9845 37 1 2.9436 -1.5727 3.3791 38 1 4.9021 1.2814 2.5305 39 1 6.6199 1.7355 6.4096 40 1 5.1834 -0.0690 7.2677 41 1 3.0343 -0.6055 7.7609 42 1 1.9146 -0.0926 6.4762 43 1 0.9341 -2.3649 6.4143 44 1 0.8211 -1.6749 8.0517 45 1 1.6120 -4.0440 8.0894 46 1 2.8357 -2.9249 8.7378 47 1 2.7525 -4.0550 5.9022 48 1 3.8910 -4.5276 7.1866 49 1 4.9156 -2.8818 5.6309 50 1 4.7644 -2.2137 7.2736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:24 Heat of formation + Delta-G solvation = 4.650447 kcal Electronic energy + Delta-G solvation = -31706.919936 eV Core-core repulsion = 27567.157214 eV Total energy + Delta-G solvation = -4139.762722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.80955 -39.47456 -38.03948 -36.40736 -35.54831 -34.34383 -33.66830 -32.77916 -31.10930 -30.13792 -29.25936 -28.32590 -26.19838 -25.20610 -24.61888 -23.32738 -23.27411 -21.76600 -20.99258 -19.84643 -19.11753 -18.08874 -17.17882 -16.94835 -16.26775 -15.69669 -15.43745 -15.21213 -14.95286 -14.78268 -14.73829 -14.18454 -13.95438 -13.83313 -13.77367 -13.41860 -13.24870 -13.13388 -12.69344 -12.61409 -12.51546 -12.26948 -11.98668 -11.60421 -11.54978 -11.49615 -11.40334 -11.04863 -11.03517 -10.88240 -10.82788 -10.74004 -10.69215 -10.65320 -10.27432 -10.16449 -10.10557 -9.36640 -9.12616 -8.75082 -8.58908 -8.42427 -7.96656 -7.51955 -6.06910 -4.14726 1.08330 1.34933 2.21370 3.14497 3.28022 3.34787 3.36865 3.44930 3.57565 3.95798 4.35717 4.50960 4.52568 4.60945 4.63395 4.78542 4.96127 5.04089 5.10405 5.21770 5.24370 5.27027 5.33647 5.41449 5.48184 5.58589 5.59952 5.64866 5.64914 5.78405 5.84837 5.85539 5.99124 6.00230 6.08662 6.20921 6.24301 6.31592 6.54902 6.71189 6.74564 6.79652 6.91295 7.00046 7.16196 7.31432 7.45545 7.69396 7.82784 8.05692 8.20806 8.61427 8.85944 9.16907 9.52129 10.98383 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.003220 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.688134 B = 8692.515784 C =11036.186950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.600 5.600 13 C 0.087 3.913 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.677 5.677 17 C 0.227 3.773 18 C -0.124 4.124 19 C -0.010 4.010 20 Cl -0.071 7.071 21 C -0.137 4.137 22 C -0.114 4.114 23 C 0.041 3.959 24 N -0.498 5.498 25 C 0.063 3.937 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.118 4.118 29 C 0.059 3.941 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.095 0.905 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.412 0.588 38 H 0.167 0.833 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -7.363 22.106 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.334 5.334 13 C -0.057 4.057 14 C 0.396 3.604 15 O -0.456 6.456 16 N -0.324 5.324 17 C 0.126 3.874 18 C -0.146 4.146 19 C -0.037 4.037 20 Cl -0.042 7.042 21 C -0.158 4.158 22 C -0.135 4.135 23 C -0.056 4.056 24 N -0.219 5.219 25 C -0.064 4.064 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.068 4.068 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.184 0.816 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.002 -6.546 21.225 22.768 hybrid contribution 0.684 -0.567 -0.120 0.896 sum 5.686 -7.112 21.105 22.986 Atomic orbital electron populations 1.22116 0.98234 0.99360 1.00926 1.18913 0.90666 0.94345 0.78869 0.91637 1.21317 1.31815 1.13043 0.90237 0.92285 1.24878 0.94937 0.94993 0.98923 1.69879 1.36337 1.22578 1.23775 0.86494 0.78664 0.79838 0.82367 1.20604 1.19955 1.21149 1.47618 1.50792 1.11528 1.23473 1.21518 1.02097 0.83394 0.98731 1.16039 0.79849 0.84911 0.79610 1.90842 1.62551 1.15338 1.76833 1.42928 1.46279 1.19333 1.23859 1.17229 0.89418 0.93257 0.87464 1.21455 0.93816 0.96657 1.02655 1.20735 0.95738 0.93372 0.93883 1.98363 1.67257 1.50055 1.88530 1.20741 1.01856 0.99335 0.93844 1.21185 0.96477 0.96447 0.99357 1.18385 0.98332 0.97433 0.91497 1.59416 1.17967 1.07446 1.37122 1.22134 0.94066 0.97575 0.92601 1.21607 0.97525 0.95252 1.01163 1.21579 0.98167 0.98103 0.98017 1.21606 0.97627 0.96850 0.99447 1.22183 0.94963 0.91028 0.98629 0.95110 0.96924 0.88684 0.92672 0.93193 0.93452 0.90408 0.74932 0.81595 0.85370 0.85591 0.94480 0.90456 0.90825 0.91419 0.91770 0.92385 0.90839 0.91434 0.90514 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.16 0.33 -3.16 16 2 C 0.27 6.87 2.64 -69.08 -0.18 6.69 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.60 -12.63 2.75 -181.01 -0.50 -13.13 16 13 C 0.09 1.42 9.49 59.85 0.57 1.99 16 14 C 0.69 14.47 8.09 -86.91 -0.70 13.77 16 15 O -0.58 -14.10 12.84 5.29 0.07 -14.03 16 16 N -0.68 -11.08 5.16 -14.07 -0.07 -11.15 16 17 C 0.23 3.52 6.45 -83.43 -0.54 2.98 16 18 C -0.12 -2.09 8.50 -39.39 -0.33 -2.42 16 19 C -0.01 -0.14 6.32 -39.49 -0.25 -0.39 16 20 Cl -0.07 -0.99 28.95 -51.86 -1.50 -2.49 16 21 C -0.14 -1.61 9.82 -39.53 -0.39 -2.00 16 22 C -0.11 -1.25 8.70 -39.41 -0.34 -1.59 16 23 C 0.04 0.51 4.71 -83.51 -0.39 0.11 16 24 N -0.50 -5.15 3.96 -170.95 -0.68 -5.83 16 25 C 0.06 0.59 5.17 -3.83 -0.02 0.57 16 26 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 27 C -0.12 -0.81 6.00 -26.61 -0.16 -0.97 16 28 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 29 C 0.06 0.50 5.12 -3.84 -0.02 0.48 16 30 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.61 6.29 -51.93 -0.33 0.29 16 36 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 37 H 0.41 5.80 5.96 -40.82 -0.24 5.55 16 38 H 0.17 3.33 5.79 -52.48 -0.30 3.02 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.13 1.10 7.13 -52.49 -0.37 0.72 16 41 H 0.04 0.32 7.56 -51.93 -0.39 -0.07 16 42 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 50 H 0.04 0.30 7.34 -51.93 -0.38 -0.08 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -29.87 403.13 -11.69 -41.56 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.56 Total: 6.02 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -3.14 Total: 1.32 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.62 Total: -54.42 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.87 -11.69 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.211 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds