Wall clock time and date at job start Tue Mar 31 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46552 * 2 1 4 4 C 1.50695 * 109.46774 * 240.00368 * 2 1 3 5 5 H 1.07997 * 119.99997 * 239.99808 * 4 2 1 6 6 C 1.37876 * 120.00298 * 59.99688 * 4 2 1 7 7 N 1.31520 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00293 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47604 * 270.00403 * 8 6 4 10 10 H 1.48507 * 109.47293 * 30.00199 * 8 6 4 11 11 H 1.48498 * 109.47461 * 149.99947 * 8 6 4 12 12 N 1.46496 * 109.47137 * 120.00316 * 2 1 3 13 13 C 1.46500 * 120.00312 * 59.99815 * 12 2 1 14 14 C 1.34779 * 119.99697 * 240.00048 * 12 2 1 15 15 O 1.21589 * 119.99883 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00015 * 180.02562 * 14 12 2 17 17 C 1.40196 * 120.00082 * 174.37377 * 16 14 12 18 18 C 1.38651 * 120.08935 * 335.22778 * 17 16 14 19 19 C 1.38344 * 119.99274 * 179.77351 * 18 17 16 20 20 Cl 1.73594 * 119.91598 * 180.27940 * 19 18 17 21 21 C 1.38372 * 120.16715 * 0.53002 * 19 18 17 22 22 C 1.38234 * 120.18135 * 359.69973 * 21 19 18 23 23 C 1.38702 * 120.00193 * 0.04846 * 22 21 19 24 24 N 1.39992 * 120.08103 * 179.97438 * 23 22 21 25 25 C 1.46854 * 110.99789 * 64.19131 * 24 23 22 26 26 C 1.53038 * 109.51942 * 174.15886 * 25 24 23 27 27 C 1.53112 * 109.28204 * 59.17718 * 26 25 24 28 28 C 1.53119 * 109.16177 * 302.34771 * 27 26 25 29 29 C 1.46846 * 111.00252 * 299.97771 * 24 23 22 30 30 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46890 * 299.99792 * 1 2 3 32 32 H 1.08992 * 109.47218 * 59.99510 * 1 2 3 33 33 H 0.97001 * 120.00186 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47006 * 89.99943 * 13 12 2 35 35 H 1.08991 * 109.47120 * 210.00074 * 13 12 2 36 36 H 1.08998 * 109.46695 * 330.00467 * 13 12 2 37 37 H 0.96997 * 119.99611 * 354.36827 * 16 14 12 38 38 H 1.08003 * 120.00601 * 359.97438 * 18 17 16 39 39 H 1.08004 * 119.91131 * 179.72907 * 21 19 18 40 40 H 1.08000 * 120.00259 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.45984 * 294.16901 * 25 24 23 42 42 H 1.08996 * 109.46104 * 54.14183 * 25 24 23 43 43 H 1.09003 * 109.50482 * 299.23421 * 26 25 24 44 44 H 1.09009 * 109.53463 * 179.13790 * 26 25 24 45 45 H 1.08994 * 109.52688 * 182.43647 * 27 26 25 46 46 H 1.09008 * 109.57656 * 62.27793 * 27 26 25 47 47 H 1.09002 * 109.49601 * 297.70881 * 28 27 26 48 48 H 1.09003 * 109.53772 * 177.61813 * 28 27 26 49 49 H 1.09003 * 109.46186 * 305.85585 * 29 24 23 50 50 H 1.08995 * 109.45758 * 65.83756 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1193 -4.0080 9 1 3.6304 -0.5438 -4.4120 10 1 2.4879 -2.5652 -3.7124 11 1 1.3442 -0.9488 -5.1123 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0356 2.0833 15 8 3.0873 1.1283 1.8906 16 7 3.2430 -0.6711 3.1835 17 6 4.1434 -0.0290 4.0451 18 6 4.9593 0.9853 3.5676 19 6 5.8438 1.6208 4.4206 20 17 6.8592 2.8953 3.8224 21 6 5.9248 1.2395 5.7483 22 6 5.1181 0.2260 6.2308 23 6 4.2250 -0.4126 5.3831 24 7 3.4076 -1.4396 5.8699 25 6 2.4748 -0.9334 6.8849 26 6 1.5038 -2.0459 7.2871 27 6 2.2964 -3.2326 7.8419 28 6 3.2941 -3.7098 6.7829 29 6 4.2132 -2.5492 6.3952 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.7093 1.1620 -3.4844 34 1 2.4158 -2.7377 0.9716 35 1 1.6239 -2.2852 2.5000 36 1 0.6905 -2.3002 0.9845 37 1 2.9436 -1.5727 3.3791 38 1 4.9021 1.2814 2.5305 39 1 6.6199 1.7355 6.4096 40 1 5.1834 -0.0690 7.2677 41 1 3.0343 -0.6055 7.7609 42 1 1.9146 -0.0926 6.4762 43 1 0.9341 -2.3649 6.4143 44 1 0.8211 -1.6749 8.0517 45 1 1.6120 -4.0440 8.0894 46 1 2.8357 -2.9249 8.7378 47 1 2.7525 -4.0550 5.9022 48 1 3.8910 -4.5276 7.1866 49 1 4.9156 -2.8818 5.6309 50 1 4.7644 -2.2137 7.2736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086280935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:23 Heat of formation + Delta-G solvation = -11.133412 kcal Electronic energy + Delta-G solvation = -31707.604376 eV Core-core repulsion = 27567.157214 eV Total energy + Delta-G solvation = -4140.447161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.161 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01036 -40.72158 -39.01617 -37.60612 -37.15369 -35.79967 -34.66768 -34.46232 -31.73634 -31.68317 -30.56968 -29.50330 -27.69045 -27.26830 -25.40766 -24.57976 -23.94132 -22.96977 -22.37257 -20.75499 -20.45797 -19.42314 -18.62311 -18.23332 -17.89834 -17.14828 -16.75638 -16.37649 -16.18948 -15.96382 -15.74984 -15.43115 -15.06471 -14.82983 -14.74159 -14.56979 -14.41854 -14.20444 -14.12484 -14.04397 -13.47688 -13.32030 -13.17951 -13.09992 -13.01356 -12.91032 -12.74329 -12.62172 -12.50845 -12.16840 -12.10088 -12.09383 -11.97399 -11.57409 -11.44936 -11.29264 -11.26808 -11.19885 -10.92261 -10.51522 -9.73878 -9.49116 -9.47355 -8.92373 -8.13441 -6.29758 0.02054 0.24829 1.11349 1.41801 1.43252 1.52771 1.71465 2.09364 2.42008 2.63579 2.74097 3.05670 3.14703 3.79155 3.92545 4.02626 4.04536 4.10000 4.23638 4.28247 4.35195 4.37416 4.47674 4.57193 4.61499 4.65020 4.73650 4.76618 4.78660 4.89410 4.93847 4.96299 4.99242 5.04831 5.05740 5.15120 5.19619 5.25504 5.30133 5.33856 5.41156 5.42235 5.52931 5.56668 5.67454 5.73592 5.98793 6.04178 6.15233 6.24787 6.35315 6.77405 7.05884 7.36980 7.59894 8.90772 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.003220 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.688134 B = 8692.515784 C =11036.186950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.279 3.721 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.261 1.261 11 H -0.279 1.279 12 N -0.608 5.608 13 C 0.085 3.915 14 C 0.689 3.311 15 O -0.623 6.623 16 N -0.659 5.659 17 C 0.197 3.803 18 C -0.149 4.149 19 C -0.022 4.022 20 Cl -0.074 7.074 21 C -0.121 4.121 22 C -0.102 4.102 23 C 0.059 3.941 24 N -0.508 5.508 25 C 0.063 3.937 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.114 4.114 29 C 0.058 3.942 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.423 0.577 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -9.973 25.137 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.177 3.823 3 H 0.029 0.971 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.185 1.185 11 H -0.205 1.205 12 N -0.342 5.342 13 C -0.057 4.057 14 C 0.391 3.609 15 O -0.504 6.504 16 N -0.308 5.308 17 C 0.098 3.902 18 C -0.171 4.171 19 C -0.049 4.049 20 Cl -0.045 7.045 21 C -0.141 4.141 22 C -0.123 4.123 23 C -0.038 4.038 24 N -0.230 5.230 25 C -0.063 4.063 26 C -0.152 4.152 27 C -0.154 4.154 28 C -0.152 4.152 29 C -0.068 4.068 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.264 0.736 38 H 0.142 0.858 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.089 0.911 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.611 -9.212 24.314 26.599 hybrid contribution 0.547 0.271 -0.928 1.111 sum 6.158 -8.941 23.386 25.783 Atomic orbital electron populations 1.21896 0.97038 1.00234 0.99967 1.18474 0.91463 0.91964 0.80426 0.97100 1.21563 1.31851 1.13065 0.91087 0.92228 1.25701 0.95069 0.95649 1.01899 1.70022 1.37289 1.23838 1.24417 0.85478 0.77730 0.79243 0.78684 1.21033 1.18540 1.20484 1.47464 1.51047 1.13198 1.22484 1.21733 1.02159 0.80568 1.01277 1.16201 0.79674 0.84499 0.80497 1.90822 1.64006 1.17538 1.78024 1.42546 1.46086 1.19485 1.22639 1.17444 0.89887 0.94080 0.88777 1.21173 0.96085 0.98514 1.01329 1.20837 0.95747 0.93558 0.94803 1.98355 1.67162 1.50190 1.88833 1.21097 1.01575 0.98770 0.92663 1.21570 0.94866 0.95195 1.00652 1.18466 0.97973 0.97234 0.90159 1.59407 1.18163 1.07257 1.38186 1.22157 0.94092 0.97603 0.92480 1.21590 0.97340 0.95231 1.01073 1.21561 0.98106 0.97747 0.98024 1.21600 0.97598 0.96652 0.99367 1.22259 0.95053 0.90629 0.98854 0.93148 0.96229 0.91210 0.92637 0.92627 0.89820 0.90277 0.73619 0.85807 0.82371 0.81946 0.93008 0.92557 0.91999 0.90330 0.90895 0.91428 0.91671 0.89856 0.91139 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.95 71.98 0.64 -5.80 16 2 C 0.28 14.72 2.64 44.25 0.12 14.84 16 3 H 0.01 0.70 6.90 -2.39 -0.02 0.68 16 4 C -0.54 -29.46 8.37 25.60 0.21 -29.25 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 8 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.61 -26.38 2.75 -844.85 -2.33 -28.70 16 13 C 0.09 2.71 9.49 127.77 1.21 3.93 16 14 C 0.69 30.18 8.09 179.05 1.45 31.63 16 15 O -0.62 -32.86 12.84 -4.00 -0.05 -32.91 16 16 N -0.66 -21.97 5.16 -316.70 -1.63 -23.61 16 17 C 0.20 6.19 6.45 38.19 0.25 6.44 16 18 C -0.15 -5.27 8.50 22.39 0.19 -5.08 16 19 C -0.02 -0.64 6.32 22.33 0.14 -0.50 16 20 Cl -0.07 -2.10 28.95 -2.72 -0.08 -2.18 16 21 C -0.12 -2.54 9.82 22.30 0.22 -2.32 16 22 C -0.10 -1.90 8.70 22.38 0.19 -1.71 16 23 C 0.06 1.35 4.71 38.24 0.18 1.53 16 24 N -0.51 -9.25 3.96 -694.75 -2.75 -12.01 16 25 C 0.06 1.01 5.17 86.32 0.45 1.46 16 26 C -0.11 -1.45 6.09 30.64 0.19 -1.27 16 27 C -0.12 -1.13 6.00 30.67 0.18 -0.94 16 28 C -0.11 -1.23 6.09 30.65 0.19 -1.04 16 29 C 0.06 0.79 5.12 86.32 0.44 1.23 16 30 H 0.05 2.19 6.66 -2.39 -0.02 2.17 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.02 6.29 -2.39 -0.02 2.01 16 36 H 0.08 2.51 6.43 -2.39 -0.02 2.49 16 37 H 0.42 11.61 5.96 -92.71 -0.55 11.06 16 38 H 0.12 5.48 5.79 -2.91 -0.02 5.46 16 39 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.16 1.92 7.13 -2.91 -0.02 1.90 16 41 H 0.05 0.69 7.56 -2.39 -0.02 0.67 16 42 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 46 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 1.06 8.11 -2.39 -0.02 1.05 16 50 H 0.05 0.58 7.34 -2.39 -0.02 0.56 16 Total: -1.00 -70.01 403.13 2.54 -67.47 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.41 Total: 24.91 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.70 Total: 14.51 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.47 Total: -117.29 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -70.01 2.54 -67.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.340 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds