Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47769 * 2 1 4 4 C 1.50708 * 109.46952 * 120.00154 * 2 1 3 5 5 H 1.08001 * 120.00317 * 119.99752 * 4 2 1 6 6 C 1.37875 * 119.99697 * 299.99670 * 4 2 1 7 7 N 1.31520 * 120.00288 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00092 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47196 * 59.99658 * 8 6 4 10 10 H 1.48505 * 109.47440 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47021 * 299.99648 * 8 6 4 12 12 N 1.46502 * 109.47044 * 239.99497 * 2 1 3 13 13 C 1.46499 * 120.00266 * 299.72920 * 12 2 1 14 14 C 1.34780 * 119.99752 * 120.00648 * 12 2 1 15 15 O 1.21587 * 119.99789 * 359.97438 * 14 12 2 16 16 N 1.34774 * 119.99631 * 180.02562 * 14 12 2 17 17 C 1.40202 * 119.99856 * 174.37172 * 16 14 12 18 18 C 1.38666 * 120.07766 * 335.23268 * 17 16 14 19 19 C 1.38421 * 119.97384 * 179.97438 * 18 17 16 20 20 F 1.35108 * 119.92120 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.15005 * 359.97438 * 19 18 17 22 22 C 1.38244 * 120.16393 * 0.02562 * 21 19 18 23 23 C 1.38684 * 120.01731 * 359.70659 * 22 21 19 24 24 N 1.40068 * 120.07326 * 180.27504 * 23 22 21 25 25 C 1.46958 * 111.00220 * 64.06964 * 24 23 22 26 26 C 1.53046 * 109.36490 * 176.81058 * 25 24 23 27 27 N 1.46956 * 109.36559 * 58.40727 * 26 25 24 28 28 C 1.46894 * 111.00102 * 176.81185 * 27 26 25 29 29 C 1.46958 * 110.87471 * 300.67707 * 27 26 25 30 30 C 1.46951 * 110.99986 * 300.27174 * 24 23 22 31 31 H 1.08991 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46780 * 300.00545 * 1 2 3 33 33 H 1.09002 * 109.46609 * 59.99576 * 1 2 3 34 34 H 0.96993 * 120.00244 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47157 * 89.99466 * 13 12 2 36 36 H 1.08999 * 109.47399 * 210.00182 * 13 12 2 37 37 H 1.08999 * 109.46998 * 329.99920 * 13 12 2 38 38 H 0.96996 * 120.00639 * 354.37508 * 16 14 12 39 39 H 1.07995 * 120.01153 * 359.95863 * 18 17 16 40 40 H 1.07996 * 119.91611 * 180.02562 * 21 19 18 41 41 H 1.08001 * 119.99104 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.48794 * 296.78209 * 25 24 23 43 43 H 1.08999 * 109.48941 * 56.84111 * 25 24 23 44 44 H 1.08993 * 109.48954 * 298.43343 * 26 25 24 45 45 H 1.09005 * 109.48451 * 178.36887 * 26 25 24 46 46 H 1.09009 * 109.47133 * 183.79403 * 28 27 26 47 47 H 1.09000 * 109.47242 * 303.79655 * 28 27 26 48 48 H 1.08999 * 109.47589 * 63.79644 * 28 27 26 49 49 H 1.09005 * 109.49002 * 299.35448 * 29 27 26 50 50 H 1.09000 * 109.50775 * 179.29950 * 29 27 26 51 51 H 1.09006 * 109.48869 * 303.15792 * 30 24 23 52 52 H 1.09002 * 109.49177 * 63.19869 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1191 4.0078 10 1 1.8268 -0.4198 5.2205 11 1 1.8278 -2.5197 4.0083 12 7 2.0183 -0.6907 -1.1961 13 6 1.6693 -2.0950 -1.4249 14 6 2.7933 -0.0358 -2.0833 15 8 3.0867 1.1284 -1.8911 16 7 3.2421 -0.6711 -3.1839 17 6 3.9483 0.0397 -4.1646 18 6 3.7645 1.4075 -4.2991 19 6 4.4632 2.1072 -5.2677 20 9 4.2829 3.4399 -5.3982 21 6 5.3463 1.4446 -6.1032 22 6 5.5342 0.0810 -5.9743 23 6 4.8419 -0.6259 -5.0026 24 7 5.0356 -2.0065 -4.8672 25 6 6.4170 -2.3077 -4.4664 26 6 6.5659 -3.8158 -4.2524 27 7 6.2150 -4.5210 -5.4930 28 6 6.4181 -5.9689 -5.3510 29 6 4.8336 -4.2198 -5.8938 30 6 4.6846 -2.7117 -6.1077 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 0.7090 1.1615 3.4843 35 1 0.7414 -2.1508 -1.9940 36 1 2.4684 -2.5816 -1.9842 37 1 1.5385 -2.5976 -0.4666 38 1 3.0766 -1.6200 -3.2977 39 1 3.0763 1.9266 -3.6486 40 1 5.8898 1.9943 -6.8573 41 1 6.2234 -0.4331 -6.6278 42 1 7.1020 -1.9821 -5.2493 43 1 6.6490 -1.7841 -3.5390 44 1 5.9007 -4.1368 -3.4510 45 1 7.5971 -4.0448 -3.9833 46 1 6.2156 -6.4594 -6.3033 47 1 7.4485 -6.1639 -5.0538 48 1 5.7409 -6.3581 -4.5908 49 1 4.1485 -4.5454 -5.1109 50 1 4.6012 -4.7434 -6.8212 51 1 3.6534 -2.4826 -6.3769 52 1 5.3496 -2.3903 -6.9094 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086293137.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -28.172365 kcal Electronic energy + Delta-G solvation = -34256.280106 eV Core-core repulsion = 29784.476367 eV Total energy + Delta-G solvation = -4471.803739 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.202 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -49.91736 -41.99927 -40.79710 -39.18413 -37.34911 -36.11477 -35.84978 -34.67961 -31.92401 -31.72159 -31.11896 -30.18954 -28.01720 -27.62709 -27.29871 -25.00432 -24.59533 -24.55437 -23.11347 -22.52606 -20.86011 -20.65018 -19.61453 -18.75773 -18.23548 -18.14228 -17.49021 -17.11458 -16.68497 -16.57838 -16.38518 -16.13435 -16.05653 -15.92108 -15.79618 -15.59611 -15.04280 -14.97842 -14.78166 -14.44680 -14.17719 -14.01282 -13.83416 -13.55420 -13.49354 -13.42074 -13.16811 -12.93572 -12.91932 -12.75397 -12.69605 -12.62714 -12.55054 -12.24739 -12.19741 -12.11581 -11.89087 -11.80955 -11.52638 -11.20689 -10.97427 -10.51648 -9.77857 -9.59635 -9.49247 -9.28394 -8.95837 -8.14408 -6.31036 0.02003 0.19936 1.41473 1.43959 1.51076 1.66122 2.05278 2.41404 2.58753 2.68541 2.96179 3.00081 3.13771 3.34051 3.76267 3.89508 4.06199 4.08845 4.20110 4.22266 4.25679 4.33564 4.35660 4.43508 4.58047 4.64197 4.66768 4.70110 4.71068 4.74017 4.85792 4.87557 4.90920 4.92733 4.96234 5.01108 5.05472 5.06688 5.09063 5.15988 5.24030 5.42640 5.44944 5.51535 5.65028 5.73972 5.86085 5.95170 6.06458 6.10751 6.14317 6.23049 6.32854 6.75895 7.02920 7.35520 7.57143 8.89853 Molecular weight = 364.20amu Principal moments of inertia in cm(-1) A = 0.008246 B = 0.003218 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.775336 B = 8697.833027 C =11097.258305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.279 3.721 3 H 0.010 0.990 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.608 5.608 13 C 0.082 3.918 14 C 0.689 3.311 15 O -0.624 6.624 16 N -0.658 5.658 17 C 0.217 3.783 18 C -0.193 4.193 19 C 0.104 3.896 20 F -0.148 7.148 21 C -0.159 4.159 22 C -0.081 4.081 23 C 0.045 3.955 24 N -0.507 5.507 25 C 0.066 3.934 26 C 0.060 3.940 27 N -0.550 5.550 28 C 0.025 3.975 29 C 0.058 3.942 30 C 0.061 3.939 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.265 0.735 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.423 0.577 39 H 0.126 0.874 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.024 0.976 49 H 0.037 0.963 50 H 0.098 0.902 51 H 0.085 0.915 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -13.801 -21.889 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.177 3.823 3 H 0.028 0.972 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.185 1.185 12 N -0.341 5.341 13 C -0.060 4.060 14 C 0.391 3.609 15 O -0.505 6.505 16 N -0.307 5.307 17 C 0.118 3.882 18 C -0.215 4.215 19 C 0.084 3.916 20 F -0.127 7.127 21 C -0.179 4.179 22 C -0.102 4.102 23 C -0.052 4.052 24 N -0.230 5.230 25 C -0.060 4.060 26 C -0.068 4.068 27 N -0.275 5.275 28 C -0.123 4.123 29 C -0.070 4.070 30 C -0.065 4.065 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.264 0.736 39 H 0.144 0.856 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.042 0.958 49 H 0.055 0.945 50 H 0.116 0.884 51 H 0.104 0.896 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.970 -12.933 -21.498 26.997 hybrid contribution -0.221 0.081 1.423 1.443 sum 9.749 -12.852 -20.074 25.753 Atomic orbital electron populations 1.21881 0.97012 1.00193 0.99928 1.18472 0.91433 0.91960 0.80425 0.97170 1.21549 1.32004 1.13187 0.91072 0.92025 1.25717 0.95041 0.95616 1.01961 1.70015 1.37249 1.23810 1.24529 0.85515 0.78325 0.79058 0.78146 1.20412 1.20953 1.18536 1.47484 1.50509 1.13231 1.22904 1.21776 1.00672 0.80563 1.03028 1.16203 0.79569 0.84629 0.80471 1.90824 1.63960 1.17735 1.77968 1.42558 1.56589 1.13393 1.18116 1.17260 0.92013 0.89909 0.89035 1.21234 1.04770 0.94775 1.00748 1.17702 0.99122 0.77265 0.97500 1.91466 1.94457 1.31491 1.95269 1.21174 1.00102 0.95352 1.01249 1.21461 0.98350 0.93173 0.97185 1.18373 0.97954 0.90320 0.98572 1.59618 1.25339 1.03809 1.34223 1.22195 0.87098 0.96040 1.00717 1.22143 1.01504 0.92481 0.90699 1.62219 1.23843 1.09491 1.31975 1.22385 1.01728 0.86505 1.01662 1.22214 0.88456 0.94990 1.01374 1.22329 1.01755 0.93109 0.89319 0.93321 0.91224 0.96276 0.92606 0.91520 0.90345 0.90479 0.73581 0.85630 0.81907 0.81757 0.92343 0.91536 0.94883 0.89044 0.90225 0.90814 0.95764 0.94459 0.88379 0.89632 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.97 71.98 0.65 -5.75 16 2 C 0.28 14.69 2.64 44.25 0.12 14.81 16 3 H 0.01 0.65 6.90 -2.39 -0.02 0.64 16 4 C -0.54 -29.36 7.98 25.60 0.20 -29.16 16 5 H 0.06 3.24 7.31 -2.91 -0.02 3.22 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.90 16 8 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.61 -26.19 2.75 -844.83 -2.33 -28.51 16 13 C 0.08 2.59 9.26 127.77 1.18 3.77 16 14 C 0.69 30.03 8.09 179.05 1.45 31.48 16 15 O -0.62 -32.94 12.84 -3.99 -0.05 -32.99 16 16 N -0.66 -21.63 5.15 -316.71 -1.63 -23.26 16 17 C 0.22 6.71 6.45 38.19 0.25 6.96 16 18 C -0.19 -6.80 8.69 22.42 0.19 -6.61 16 19 C 0.10 3.07 7.29 22.37 0.16 3.24 16 20 F -0.15 -4.69 17.26 44.97 0.78 -3.91 16 21 C -0.16 -3.32 10.02 22.32 0.22 -3.10 16 22 C -0.08 -1.49 8.65 22.38 0.19 -1.30 16 23 C 0.04 1.02 4.75 38.21 0.18 1.20 16 24 N -0.51 -9.48 4.02 -694.12 -2.79 -12.27 16 25 C 0.07 1.16 5.36 86.31 0.46 1.62 16 26 C 0.06 0.93 5.62 86.31 0.49 1.41 16 27 N -0.55 -7.49 4.97 -921.95 -4.58 -12.07 16 28 C 0.03 0.27 9.60 127.69 1.23 1.49 16 29 C 0.06 0.73 5.62 86.31 0.49 1.21 16 30 C 0.06 0.85 5.31 86.31 0.46 1.31 16 31 H 0.05 2.13 7.68 -2.39 -0.02 2.11 16 32 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.96 6.28 -2.39 -0.02 1.94 16 37 H 0.08 2.58 7.00 -2.39 -0.02 2.57 16 38 H 0.42 11.42 5.97 -92.71 -0.55 10.87 16 39 H 0.13 5.47 5.78 -2.91 -0.02 5.45 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.17 1.98 7.06 -2.91 -0.02 1.96 16 42 H 0.06 0.91 7.46 -2.39 -0.02 0.89 16 43 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 44 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.22 8.13 -2.38 -0.02 1.20 16 46 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 48 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 49 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.09 1.16 8.13 -2.38 -0.02 1.14 16 52 H 0.06 0.73 7.23 -2.39 -0.02 0.71 16 Total: -1.00 -70.82 409.43 0.42 -70.41 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.38 Total: 26.51 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 8.37 Total: 23.94 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -11.09 Total: -129.02 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.78 Total: -3.91 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -70.82 0.42 -70.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086293137.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.234 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds