Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47081 * 2 1 4 4 C 1.50702 * 109.46953 * 240.00261 * 2 1 3 5 5 H 1.08001 * 119.99699 * 245.30521 * 4 2 1 6 6 C 1.37872 * 120.00128 * 65.31039 * 4 2 1 7 7 N 1.31519 * 120.00009 * 5.13907 * 6 4 2 8 8 Si 1.86796 * 120.00086 * 185.13784 * 6 4 2 9 9 H 1.48507 * 109.47131 * 95.00166 * 8 6 4 10 10 H 1.48504 * 109.47104 * 214.99694 * 8 6 4 11 11 H 1.48500 * 109.47334 * 335.00270 * 8 6 4 12 12 N 1.46503 * 109.47208 * 120.00587 * 2 1 3 13 13 C 1.46500 * 120.00200 * 59.99399 * 12 2 1 14 14 C 1.34777 * 119.99747 * 240.00143 * 12 2 1 15 15 O 1.21599 * 120.00055 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00115 * 179.97438 * 14 12 2 17 17 C 1.40196 * 120.00302 * 184.40931 * 16 14 12 18 18 C 1.38663 * 120.07951 * 325.35698 * 17 16 14 19 19 C 1.38416 * 119.97869 * 180.27481 * 18 17 16 20 20 F 1.35100 * 119.92721 * 179.74144 * 19 18 17 21 21 C 1.38464 * 120.14430 * 359.77027 * 19 18 17 22 22 C 1.38241 * 120.16564 * 359.97438 * 21 19 18 23 23 C 1.38676 * 120.02039 * 0.02562 * 22 21 19 24 24 N 1.40066 * 120.07675 * 179.97438 * 23 22 21 25 25 C 1.46964 * 110.99535 * 299.99956 * 24 23 22 26 26 C 1.53044 * 109.36032 * 183.18591 * 25 24 23 27 27 N 1.46960 * 109.36845 * 301.59840 * 26 25 24 28 28 C 1.46898 * 110.99900 * 183.19072 * 27 26 25 29 29 C 1.46954 * 110.87692 * 59.32106 * 27 26 25 30 30 C 1.46952 * 111.00023 * 63.79718 * 24 23 22 31 31 H 1.09001 * 109.47241 * 294.94274 * 1 2 3 32 32 H 1.09003 * 109.47506 * 54.94782 * 1 2 3 33 33 H 1.09000 * 109.47160 * 174.94921 * 1 2 3 34 34 H 0.96993 * 120.00105 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47289 * 270.00598 * 13 12 2 36 36 H 1.09001 * 109.46990 * 30.00777 * 13 12 2 37 37 H 1.09001 * 109.46783 * 150.00581 * 13 12 2 38 38 H 0.97001 * 119.99476 * 4.40866 * 16 14 12 39 39 H 1.08004 * 120.01184 * 0.02562 * 18 17 16 40 40 H 1.08006 * 119.91475 * 180.02562 * 21 19 18 41 41 H 1.08001 * 119.99143 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.48808 * 63.22149 * 25 24 23 43 43 H 1.08996 * 109.49198 * 303.15795 * 25 24 23 44 44 H 1.09004 * 109.49207 * 181.63150 * 26 25 24 45 45 H 1.09002 * 109.49397 * 61.56906 * 26 25 24 46 46 H 1.08995 * 109.47582 * 59.99851 * 28 27 26 47 47 H 1.09006 * 109.47241 * 299.99802 * 28 27 26 48 48 H 1.09006 * 109.46944 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.48786 * 60.64812 * 29 27 26 50 50 H 1.08996 * 109.48874 * 180.70953 * 29 27 26 51 51 H 1.09007 * 109.49037 * 296.78021 * 30 24 23 52 52 H 1.08996 * 109.48926 * 56.82519 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5807 -1.6357 -1.1337 6 6 1.7918 -0.1789 -2.4798 7 7 1.2137 0.9969 -2.5940 8 14 2.2872 -1.1288 -4.0100 9 1 1.1245 -1.9074 -4.5073 10 1 2.7319 -0.1780 -5.0605 11 1 3.3988 -2.0561 -3.6789 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0873 1.1283 1.8908 16 7 3.2421 -0.6710 3.1840 17 6 3.9701 0.0342 4.1525 18 6 4.8275 1.0550 3.7707 19 6 5.5496 1.7462 4.7282 20 9 6.3885 2.7371 4.3546 21 6 5.4145 1.4238 6.0680 22 6 4.5575 0.4107 6.4557 23 6 3.8307 -0.2862 5.5022 24 7 2.9625 -1.3132 5.8937 25 6 3.6905 -2.3786 6.5971 26 6 2.7233 -3.5150 6.9369 27 7 1.6292 -2.9920 7.7670 28 6 0.7187 -4.0692 8.1777 29 6 0.9013 -1.9266 7.0637 30 6 1.8685 -0.7901 6.7238 31 1 -0.3634 0.4334 0.9318 32 1 -0.3634 0.5902 -0.8413 33 1 -0.3633 -1.0237 -0.0905 34 1 1.0442 1.3706 -3.4729 35 1 0.7375 -2.1445 1.9992 36 1 1.5295 -2.5969 0.4707 37 1 2.4628 -2.5820 1.9863 38 1 3.0613 -1.6162 3.3060 39 1 4.9348 1.3081 2.7262 40 1 5.9794 1.9658 6.8121 41 1 4.4540 0.1619 7.5016 42 1 4.1202 -1.9799 7.5160 43 1 4.4872 -2.7582 5.9574 44 1 3.2548 -4.2936 7.4842 45 1 2.3141 -3.9318 6.0166 46 1 1.2707 -4.8115 8.7541 47 1 0.2913 -4.5407 7.2927 48 1 -0.0817 -3.6545 8.7904 49 1 0.4716 -2.3253 6.1448 50 1 0.1046 -1.5470 7.7033 51 1 2.2776 -0.3734 7.6442 52 1 1.3372 -0.0114 6.1767 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086293139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -30.985169 kcal Electronic energy + Delta-G solvation = -34270.860382 eV Core-core repulsion = 29798.934671 eV Total energy + Delta-G solvation = -4471.925711 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.202 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -49.92517 -41.95201 -40.77500 -39.18383 -37.30697 -36.11431 -35.81437 -34.64037 -31.91624 -31.76978 -31.13023 -30.20517 -28.00965 -27.60884 -27.26842 -24.97861 -24.58464 -24.55226 -23.13126 -22.50758 -20.85634 -20.63864 -19.58795 -18.74579 -18.25197 -18.11306 -17.51804 -17.18630 -16.66093 -16.52822 -16.37056 -16.12307 -16.05239 -15.90823 -15.74041 -15.58543 -15.09099 -14.91579 -14.71655 -14.48351 -14.18559 -14.01726 -13.85955 -13.62631 -13.47051 -13.37685 -13.15788 -12.92058 -12.91159 -12.78614 -12.66319 -12.60072 -12.57825 -12.25184 -12.23698 -12.08683 -11.87864 -11.80656 -11.39168 -11.22662 -10.97013 -10.52715 -9.79566 -9.58097 -9.48292 -9.27187 -9.01513 -8.15757 -6.30351 0.00847 0.17919 1.41221 1.42554 1.52533 1.69134 2.09019 2.41315 2.56451 2.68643 2.98468 3.01085 3.14280 3.34261 3.76759 3.89923 4.04483 4.09590 4.20974 4.23084 4.25463 4.34394 4.36031 4.44285 4.58665 4.65124 4.67902 4.71518 4.72004 4.74128 4.84986 4.86468 4.90907 4.93462 4.97104 5.00634 5.02108 5.07443 5.09568 5.14812 5.23758 5.43316 5.45647 5.49289 5.66142 5.73387 5.87088 5.92145 6.07460 6.10171 6.11686 6.23912 6.33561 6.78425 7.05635 7.36311 7.60846 8.90859 Molecular weight = 364.20amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.003053 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.630534 B = 9169.088097 C =11369.989656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.278 3.722 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.608 5.608 13 C 0.084 3.916 14 C 0.691 3.309 15 O -0.627 6.627 16 N -0.661 5.661 17 C 0.211 3.789 18 C -0.181 4.181 19 C 0.100 3.900 20 F -0.148 7.148 21 C -0.152 4.152 22 C -0.086 4.086 23 C 0.053 3.947 24 N -0.506 5.506 25 C 0.061 3.939 26 C 0.058 3.942 27 N -0.550 5.550 28 C 0.025 3.975 29 C 0.061 3.939 30 C 0.067 3.933 31 H 0.023 0.977 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.422 0.578 39 H 0.118 0.882 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.037 0.963 46 H 0.078 0.922 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.033 0.967 50 H 0.091 0.909 51 H 0.058 0.942 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -11.855 25.713 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.175 3.825 3 H 0.031 0.969 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.192 1.192 12 N -0.342 5.342 13 C -0.059 4.059 14 C 0.393 3.607 15 O -0.508 6.508 16 N -0.310 5.310 17 C 0.113 3.887 18 C -0.203 4.203 19 C 0.080 3.920 20 F -0.127 7.127 21 C -0.172 4.172 22 C -0.106 4.106 23 C -0.044 4.044 24 N -0.228 5.228 25 C -0.066 4.066 26 C -0.070 4.070 27 N -0.275 5.275 28 C -0.123 4.123 29 C -0.067 4.067 30 C -0.060 4.060 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.263 0.737 39 H 0.136 0.864 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.110 0.890 51 H 0.076 0.924 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.394 -10.969 25.335 27.711 hybrid contribution 0.166 -0.030 -1.698 1.706 sum 2.561 -10.999 23.637 26.196 Atomic orbital electron populations 1.21801 0.97091 1.00509 0.98865 1.18473 0.91265 0.92253 0.80471 0.96859 1.21591 1.36152 1.08818 0.91158 0.91824 1.25746 0.95105 0.95486 1.02108 1.70092 1.43672 1.17432 1.24651 0.85451 0.78747 0.78285 0.78569 1.19255 1.21484 1.19248 1.47436 1.50865 1.13253 1.22655 1.21757 1.00608 0.80609 1.02887 1.16191 0.79552 0.84486 0.80506 1.90855 1.64210 1.17946 1.77829 1.42462 1.55947 1.13570 1.19032 1.17213 0.90862 0.93146 0.87441 1.21154 0.98693 0.99911 1.00558 1.17709 0.92021 0.88411 0.93843 1.91466 1.69225 1.59436 1.92585 1.21200 1.02401 1.00575 0.93050 1.21487 0.94484 0.94062 1.00547 1.18475 0.98610 0.97366 0.89949 1.59642 1.10450 1.09335 1.43411 1.22333 0.95786 0.91054 0.97397 1.22204 0.92596 0.96345 0.95837 1.62216 1.12126 1.11864 1.41327 1.22382 0.96383 0.93677 0.99812 1.22133 0.95587 0.91962 0.97052 1.22185 0.91745 0.96701 0.95350 0.95753 0.92884 0.92941 0.92700 0.91636 0.90471 0.90442 0.73736 0.86401 0.81796 0.81693 0.92431 0.89680 0.88453 0.94438 0.90294 0.95739 0.90794 0.94823 0.89035 0.92415 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.89 71.98 0.64 -5.29 16 2 C 0.28 14.59 2.51 44.24 0.11 14.70 16 3 H 0.01 0.85 6.88 -2.39 -0.02 0.84 16 4 C -0.54 -29.35 8.02 25.60 0.21 -29.15 16 5 H 0.06 3.34 7.15 -2.91 -0.02 3.32 16 6 C 0.02 0.85 5.29 84.65 0.45 1.29 16 7 N -0.92 -54.20 11.98 21.45 0.26 -53.94 16 8 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 N -0.61 -26.17 2.75 -844.82 -2.33 -28.49 16 13 C 0.08 2.61 9.33 127.77 1.19 3.81 16 14 C 0.69 30.20 8.13 179.05 1.46 31.65 16 15 O -0.63 -33.49 13.09 -4.03 -0.05 -33.54 16 16 N -0.66 -21.67 5.05 -316.70 -1.60 -23.27 16 17 C 0.21 6.54 6.33 38.19 0.24 6.78 16 18 C -0.18 -6.41 8.68 22.41 0.19 -6.21 16 19 C 0.10 2.96 7.29 22.37 0.16 3.12 16 20 F -0.15 -4.72 17.26 44.97 0.78 -3.95 16 21 C -0.15 -3.16 10.02 22.32 0.22 -2.94 16 22 C -0.09 -1.55 8.64 22.38 0.19 -1.36 16 23 C 0.05 1.19 4.75 38.21 0.18 1.37 16 24 N -0.51 -9.30 4.17 -694.12 -2.89 -12.19 16 25 C 0.06 0.83 5.31 86.31 0.46 1.29 16 26 C 0.06 0.72 5.62 86.31 0.49 1.20 16 27 N -0.55 -7.25 4.97 -921.95 -4.58 -11.83 16 28 C 0.03 0.26 9.60 127.69 1.23 1.48 16 29 C 0.06 0.90 5.62 86.31 0.49 1.39 16 30 C 0.07 1.14 5.36 86.31 0.46 1.60 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 2.80 6.83 -2.39 -0.02 2.78 16 33 H 0.05 2.25 7.84 -2.39 -0.02 2.23 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.54 6.92 -2.39 -0.02 2.52 16 37 H 0.08 1.90 6.30 -2.39 -0.02 1.88 16 38 H 0.42 11.28 6.21 -92.71 -0.58 10.71 16 39 H 0.12 5.19 6.19 -2.91 -0.02 5.17 16 40 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.17 1.94 7.06 -2.91 -0.02 1.92 16 42 H 0.06 0.71 7.25 -2.39 -0.02 0.69 16 43 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 44 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.02 0.27 8.14 -2.38 -0.02 0.25 16 48 H 0.07 0.67 8.13 -2.38 -0.02 0.65 16 49 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16 51 H 0.06 0.88 7.45 -2.38 -0.02 0.86 16 52 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 Total: -1.00 -72.30 411.48 0.33 -71.97 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.36 Total: 25.15 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 8.37 Total: 24.75 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -11.14 Total: -129.73 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.78 Total: -3.95 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.30 0.33 -71.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086293139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.985 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds