Wall clock time and date at job start Tue Mar 31 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47618 * 50.51165 * 3 2 1 5 5 C 1.35973 * 117.00247 * 179.97438 * 4 3 2 6 6 C 1.38714 * 119.98497 * 180.02562 * 5 4 3 7 7 C 1.38092 * 120.01344 * 180.02562 * 6 5 4 8 8 C 1.38845 * 119.98773 * 359.97438 * 7 6 5 9 9 N 1.40143 * 120.01661 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00240 * 146.83645 * 9 8 7 11 11 O 1.21588 * 119.99747 * 354.70674 * 10 9 8 12 12 N 1.34776 * 120.00103 * 174.70652 * 10 9 8 13 13 C 1.46497 * 120.00265 * 359.97438 * 12 10 9 14 14 C 1.50698 * 109.47318 * 270.00796 * 13 12 10 15 15 H 1.07993 * 120.00263 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99768 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00037 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99849 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47366 * 59.99551 * 18 16 14 20 20 H 1.48502 * 109.47080 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46668 * 299.99459 * 18 16 14 22 22 C 1.46504 * 119.99786 * 180.02562 * 12 10 9 23 23 C 1.50701 * 109.46833 * 269.99277 * 22 12 10 24 24 C 1.38231 * 119.61402 * 94.73061 * 23 22 12 25 25 C 1.38633 * 119.15699 * 179.75414 * 24 23 22 26 26 C 1.38666 * 118.42242 * 0.50982 * 25 24 23 27 27 C 1.38189 * 119.16191 * 359.73321 * 26 25 24 28 28 N 1.31852 * 119.62278 * 275.00301 * 23 22 12 29 29 C 1.38834 * 119.96895 * 0.27928 * 8 7 6 30 30 C 1.38101 * 119.98236 * 359.44776 * 29 8 7 31 31 H 4.38451 * 5.44412 * 180.02562 * 4 1 2 32 32 H 1.09006 * 109.47298 * 290.51068 * 3 2 1 33 33 H 1.09004 * 109.46787 * 170.51076 * 3 2 1 34 34 H 1.07994 * 119.99450 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.01107 * 179.97438 * 7 6 5 36 36 H 0.97007 * 119.99932 * 326.84107 * 9 8 7 37 37 H 1.09004 * 109.46683 * 30.00568 * 13 12 10 38 38 H 1.09001 * 109.47301 * 150.00025 * 13 12 10 39 39 H 0.97004 * 120.00147 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47000 * 149.99436 * 22 12 10 41 41 H 1.08997 * 109.47507 * 29.99620 * 22 12 10 42 42 H 1.07996 * 120.42212 * 359.97438 * 24 23 22 43 43 H 1.08005 * 120.78714 * 180.26297 * 25 24 23 44 44 H 1.07996 * 120.42314 * 179.70995 * 26 25 24 45 45 H 1.07998 * 119.61527 * 180.02562 * 27 26 25 46 46 H 1.07994 * 120.00599 * 179.70493 * 29 8 7 47 47 H 1.08006 * 119.99191 * 180.27805 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -0.8559 -1.0398 5 6 4.4709 -0.9681 -1.1776 6 6 5.0012 -1.7827 -2.1673 7 6 6.3702 -1.8975 -2.3074 8 6 7.2159 -1.1970 -1.4577 9 7 8.6053 -1.3127 -1.5998 10 6 9.4007 -0.2596 -1.3262 11 8 8.9094 0.8176 -1.0497 12 7 10.7407 -0.4006 -1.3593 13 6 11.3327 -1.6987 -1.6919 14 6 11.5322 -2.4981 -0.4301 15 1 11.2470 -2.0808 0.5242 16 6 12.0799 -3.7619 -0.4940 17 7 12.4277 -4.2698 -1.6561 18 14 12.3278 -4.7525 1.0702 19 1 11.0173 -4.9626 1.7360 20 1 12.9290 -6.0678 0.7330 21 1 13.2351 -4.0141 1.9850 22 6 11.6052 0.7440 -1.0614 23 6 11.9052 1.4917 -2.3349 24 6 11.1294 2.5803 -2.6869 25 6 11.4170 3.2643 -3.8579 26 6 12.4721 2.8195 -4.6400 27 6 13.2002 1.7202 -4.2263 28 7 12.9013 1.0968 -3.1034 29 6 6.6845 -0.3861 -0.4640 30 6 5.3153 -0.2677 -0.3286 31 1 -1.0498 0.0000 -0.0003 32 1 3.0096 -0.3593 0.9626 33 1 3.0089 1.0145 -0.1694 34 1 4.3433 -2.3278 -2.8278 35 1 6.7830 -2.5320 -3.0777 36 1 8.9946 -2.1508 -1.8950 37 1 10.6666 -2.2403 -2.3637 38 1 12.2948 -1.5448 -2.1806 39 1 12.8126 -5.1590 -1.7011 40 1 12.5368 0.3904 -0.6196 41 1 11.0999 1.4083 -0.3604 42 1 10.3119 2.8960 -2.0558 43 1 10.8306 4.1209 -4.1560 44 1 12.7214 3.3254 -5.5610 45 1 14.0238 1.3678 -4.8296 46 1 7.3418 0.1553 0.2002 47 1 4.9018 0.3666 0.4415 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089261864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:46 Heat of formation + Delta-G solvation = 69.063519 kcal Electronic energy + Delta-G solvation = -31446.052142 eV Core-core repulsion = 27175.682336 eV Total energy + Delta-G solvation = -4270.369806 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.47839 -39.98344 -39.36552 -37.45344 -35.19855 -34.21001 -33.44341 -32.76940 -32.18525 -31.35048 -30.88908 -28.87129 -27.63945 -27.35426 -25.81320 -23.36839 -23.08470 -22.77144 -22.30292 -21.43211 -19.36527 -18.74333 -18.22685 -17.67872 -16.97270 -16.64240 -16.35610 -16.11272 -15.94911 -15.71655 -15.26893 -15.07441 -14.68981 -14.51538 -14.24224 -13.97624 -13.58862 -13.28421 -13.22818 -13.02959 -12.94904 -12.87282 -12.68372 -12.39598 -12.19991 -11.77941 -11.63702 -11.51701 -11.28262 -11.17909 -10.97657 -10.75443 -10.68964 -10.45216 -10.23016 -9.87127 -9.65641 -9.62264 -9.42814 -9.15939 -8.83093 -8.78499 -8.56730 -7.90991 -7.32333 -6.19305 -4.27476 1.29368 1.49348 1.51492 1.61592 2.07511 2.45589 3.24532 3.25206 3.29575 3.33541 3.47800 3.62933 4.05459 4.12236 4.14754 4.30841 4.58879 4.70576 4.82951 4.97548 4.99975 5.02930 5.04271 5.09118 5.14054 5.25863 5.38497 5.46412 5.52247 5.58347 5.71019 5.78640 5.81336 6.01302 6.11441 6.16810 6.21220 6.35050 6.39284 6.52435 6.59932 6.66568 6.72489 6.92120 7.11554 7.16546 7.20434 7.32255 7.49851 7.71880 7.75563 8.02242 8.30021 8.49351 8.80943 9.15834 9.40944 10.87056 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007046 B = 0.002861 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3972.917829 B = 9785.861385 C =12877.443283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.193 4.193 3 C 0.171 3.829 4 O -0.314 6.314 5 C 0.094 3.906 6 C -0.126 4.126 7 C -0.116 4.116 8 C 0.156 3.844 9 N -0.680 5.680 10 C 0.710 3.290 11 O -0.605 6.605 12 N -0.600 5.600 13 C 0.240 3.760 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.186 3.814 23 C 0.117 3.883 24 C -0.149 4.149 25 C -0.085 4.085 26 C -0.181 4.181 27 C 0.094 3.906 28 N -0.463 5.463 29 C -0.083 4.083 30 C -0.186 4.186 31 H 0.223 0.777 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.418 0.582 37 H 0.026 0.974 38 H 0.051 0.949 39 H 0.266 0.734 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 10.626 -1.911 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.193 4.193 3 C 0.097 3.903 4 O -0.229 6.229 5 C 0.049 3.951 6 C -0.145 4.145 7 C -0.137 4.137 8 C 0.059 3.941 9 N -0.329 5.329 10 C 0.412 3.588 11 O -0.486 6.486 12 N -0.333 5.333 13 C 0.121 3.879 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.061 3.939 23 C -0.022 4.022 24 C -0.170 4.170 25 C -0.111 4.111 26 C -0.201 4.201 27 C -0.064 4.064 28 N -0.173 5.173 29 C -0.104 4.104 30 C -0.205 4.205 31 H 0.240 0.760 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.258 0.742 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.169 0.831 46 H 0.159 0.841 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.712 10.370 -1.640 15.729 hybrid contribution -0.123 -0.250 0.363 0.458 sum -11.835 10.121 -1.277 15.624 Atomic orbital electron populations 1.24976 0.95838 0.99232 0.98504 1.22396 0.93655 1.01475 1.01819 1.19236 0.84628 0.95051 0.91380 1.86066 1.19881 1.64449 1.52513 1.18802 0.81185 0.98013 0.97062 1.20070 0.94238 1.01133 0.99083 1.20704 0.92025 1.02079 0.98898 1.17527 0.82612 0.98913 0.95015 1.42860 1.03650 1.15900 1.70447 1.15790 0.81808 0.83259 0.77945 1.90796 1.74495 1.25994 1.57337 1.47348 1.02681 1.12425 1.70840 1.19416 0.95073 0.77266 0.96192 1.21450 1.42629 1.00271 0.93537 0.92047 1.24935 0.94911 0.97470 0.96377 1.69915 1.41667 1.17244 1.23863 0.86563 0.78607 0.79117 0.83218 1.20134 1.21191 1.20104 1.20034 0.95616 0.87290 0.90971 1.21942 0.90653 0.92692 0.96907 1.22141 1.00362 0.96650 0.97819 1.21550 0.96329 0.99018 0.94175 1.22088 0.97693 0.99221 1.01102 1.22758 0.98405 0.92123 0.93100 1.67593 1.16207 1.28876 1.04590 1.21023 0.94230 0.98496 0.96615 1.21061 0.93821 1.03717 1.01948 0.75983 0.89564 0.89579 0.85172 0.85000 0.74218 0.95640 0.93081 0.92431 0.88365 0.89134 0.84345 0.85339 0.85346 0.83079 0.84123 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.19 -2.00 13.73 -37.12 -0.51 -2.51 16 3 C 0.17 1.74 5.21 34.37 0.18 1.92 16 4 O -0.31 -4.11 10.10 -19.65 -0.20 -4.31 16 5 C 0.09 1.30 6.69 -39.23 -0.26 1.04 16 6 C -0.13 -1.72 9.98 -39.46 -0.39 -2.12 16 7 C -0.12 -1.70 9.96 -39.41 -0.39 -2.10 16 8 C 0.16 2.65 6.28 -83.61 -0.53 2.13 16 9 N -0.68 -12.80 5.23 -14.19 -0.07 -12.87 16 10 C 0.71 14.43 8.02 -86.92 -0.70 13.73 16 11 O -0.61 -12.58 13.54 5.29 0.07 -12.51 16 12 N -0.60 -12.36 2.44 -182.18 -0.44 -12.80 16 13 C 0.24 5.61 4.97 -5.20 -0.03 5.58 16 14 C -0.54 -13.71 9.39 -34.44 -0.32 -14.03 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 18 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.19 3.42 5.71 -5.19 -0.03 3.39 16 23 C 0.12 2.05 6.36 -82.59 -0.53 1.52 16 24 C -0.15 -2.30 9.72 -39.44 -0.38 -2.69 16 25 C -0.08 -1.10 10.18 -39.28 -0.40 -1.50 16 26 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 27 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 28 N -0.46 -8.26 10.27 -9.47 -0.10 -8.35 16 29 C -0.08 -1.36 8.65 -39.41 -0.34 -1.70 16 30 C -0.19 -2.57 9.03 -39.46 -0.36 -2.92 16 31 H 0.22 0.97 7.80 -54.10 -0.42 0.54 16 32 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 33 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.42 7.98 6.51 -40.82 -0.27 7.71 16 37 H 0.03 0.62 6.29 -51.93 -0.33 0.29 16 38 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.10 1.84 8.07 -51.93 -0.42 1.42 16 41 H 0.09 1.55 7.32 -51.93 -0.38 1.17 16 42 H 0.14 2.11 7.98 -52.49 -0.42 1.69 16 43 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.14 2.49 6.42 -52.49 -0.34 2.15 16 47 H 0.13 1.39 6.29 -52.48 -0.33 1.06 16 LS Contribution 412.09 15.07 6.21 6.21 Total: -1.00 -30.93 412.09 -9.70 -40.63 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.77 Total: 12.97 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -5.11 Total: -0.93 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.12 Total: -57.45 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.13 Total: -16.83 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.93 -9.70 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089261864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.692 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds