Wall clock time and date at job start Tue Mar 31 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47618 * 50.51165 * 3 2 1 5 5 C 1.35973 * 117.00247 * 179.97438 * 4 3 2 6 6 C 1.38714 * 119.98497 * 180.02562 * 5 4 3 7 7 C 1.38092 * 120.01344 * 180.02562 * 6 5 4 8 8 C 1.38845 * 119.98773 * 359.97438 * 7 6 5 9 9 N 1.40143 * 120.01661 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00240 * 146.83645 * 9 8 7 11 11 O 1.21588 * 119.99747 * 354.70674 * 10 9 8 12 12 N 1.34776 * 120.00103 * 174.70652 * 10 9 8 13 13 C 1.46497 * 120.00265 * 359.97438 * 12 10 9 14 14 C 1.50698 * 109.47318 * 270.00796 * 13 12 10 15 15 H 1.07993 * 120.00263 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99768 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00037 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99849 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47366 * 59.99551 * 18 16 14 20 20 H 1.48502 * 109.47080 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46668 * 299.99459 * 18 16 14 22 22 C 1.46504 * 119.99786 * 180.02562 * 12 10 9 23 23 C 1.50701 * 109.46833 * 269.99277 * 22 12 10 24 24 C 1.38231 * 119.61402 * 94.73061 * 23 22 12 25 25 C 1.38633 * 119.15699 * 179.75414 * 24 23 22 26 26 C 1.38666 * 118.42242 * 0.50982 * 25 24 23 27 27 C 1.38189 * 119.16191 * 359.73321 * 26 25 24 28 28 N 1.31852 * 119.62278 * 275.00301 * 23 22 12 29 29 C 1.38834 * 119.96895 * 0.27928 * 8 7 6 30 30 C 1.38101 * 119.98236 * 359.44776 * 29 8 7 31 31 H 4.38451 * 5.44412 * 180.02562 * 4 1 2 32 32 H 1.09006 * 109.47298 * 290.51068 * 3 2 1 33 33 H 1.09004 * 109.46787 * 170.51076 * 3 2 1 34 34 H 1.07994 * 119.99450 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.01107 * 179.97438 * 7 6 5 36 36 H 0.97007 * 119.99932 * 326.84107 * 9 8 7 37 37 H 1.09004 * 109.46683 * 30.00568 * 13 12 10 38 38 H 1.09001 * 109.47301 * 150.00025 * 13 12 10 39 39 H 0.97004 * 120.00147 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47000 * 149.99436 * 22 12 10 41 41 H 1.08997 * 109.47507 * 29.99620 * 22 12 10 42 42 H 1.07996 * 120.42212 * 359.97438 * 24 23 22 43 43 H 1.08005 * 120.78714 * 180.26297 * 25 24 23 44 44 H 1.07996 * 120.42314 * 179.70995 * 26 25 24 45 45 H 1.07998 * 119.61527 * 180.02562 * 27 26 25 46 46 H 1.07994 * 120.00599 * 179.70493 * 29 8 7 47 47 H 1.08006 * 119.99191 * 180.27805 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -0.8559 -1.0398 5 6 4.4709 -0.9681 -1.1776 6 6 5.0012 -1.7827 -2.1673 7 6 6.3702 -1.8975 -2.3074 8 6 7.2159 -1.1970 -1.4577 9 7 8.6053 -1.3127 -1.5998 10 6 9.4007 -0.2596 -1.3262 11 8 8.9094 0.8176 -1.0497 12 7 10.7407 -0.4006 -1.3593 13 6 11.3327 -1.6987 -1.6919 14 6 11.5322 -2.4981 -0.4301 15 1 11.2470 -2.0808 0.5242 16 6 12.0799 -3.7619 -0.4940 17 7 12.4277 -4.2698 -1.6561 18 14 12.3278 -4.7525 1.0702 19 1 11.0173 -4.9626 1.7360 20 1 12.9290 -6.0678 0.7330 21 1 13.2351 -4.0141 1.9850 22 6 11.6052 0.7440 -1.0614 23 6 11.9052 1.4917 -2.3349 24 6 11.1294 2.5803 -2.6869 25 6 11.4170 3.2643 -3.8579 26 6 12.4721 2.8195 -4.6400 27 6 13.2002 1.7202 -4.2263 28 7 12.9013 1.0968 -3.1034 29 6 6.6845 -0.3861 -0.4640 30 6 5.3153 -0.2677 -0.3286 31 1 -1.0498 0.0000 -0.0003 32 1 3.0096 -0.3593 0.9626 33 1 3.0089 1.0145 -0.1694 34 1 4.3433 -2.3278 -2.8278 35 1 6.7830 -2.5320 -3.0777 36 1 8.9946 -2.1508 -1.8950 37 1 10.6666 -2.2403 -2.3637 38 1 12.2948 -1.5448 -2.1806 39 1 12.8126 -5.1590 -1.7011 40 1 12.5368 0.3904 -0.6196 41 1 11.0999 1.4083 -0.3604 42 1 10.3119 2.8960 -2.0558 43 1 10.8306 4.1209 -4.1560 44 1 12.7214 3.3254 -5.5610 45 1 14.0238 1.3678 -4.8296 46 1 7.3418 0.1553 0.2002 47 1 4.9018 0.3666 0.4415 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089261864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:44 Heat of formation + Delta-G solvation = 52.824930 kcal Electronic energy + Delta-G solvation = -31446.756300 eV Core-core repulsion = 27175.682336 eV Total energy + Delta-G solvation = -4271.073965 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.83508 -41.12049 -40.60242 -38.64782 -36.81425 -35.50864 -34.66139 -34.24949 -33.34873 -32.65936 -32.03075 -29.97662 -29.40461 -28.35009 -27.21748 -25.02176 -24.33099 -24.07318 -23.48511 -22.63609 -20.83170 -19.62873 -19.25538 -18.97453 -18.73844 -18.14625 -17.64980 -17.10689 -17.01387 -16.92413 -16.59069 -16.45923 -16.25697 -15.91053 -15.43401 -15.15366 -14.88613 -14.60504 -14.44307 -14.21389 -14.10195 -14.04615 -14.00693 -13.88316 -13.53304 -13.27743 -13.08015 -12.78866 -12.75911 -12.61086 -12.52608 -12.17582 -12.07169 -11.76837 -11.54990 -11.28584 -11.12799 -10.78750 -10.74504 -10.60317 -10.37235 -9.98234 -9.94334 -9.53562 -8.60625 -8.19576 -6.35122 0.14694 0.34509 0.41185 0.41870 1.30765 1.42670 1.43048 1.50839 1.77517 1.81924 2.14029 2.40221 2.65965 2.83082 2.87986 3.09751 3.15834 3.42796 3.46001 3.84428 3.87733 3.93969 4.04082 4.14767 4.20120 4.27982 4.31149 4.34236 4.44342 4.47434 4.59285 4.62252 4.79518 4.83413 4.89850 4.93531 4.96662 5.05259 5.18133 5.24208 5.28765 5.34289 5.36761 5.52492 5.59256 5.74893 5.83572 5.92289 6.03289 6.12058 6.41129 6.54437 6.67698 6.96288 7.14429 7.36273 7.58935 8.85136 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007046 B = 0.002861 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3972.917829 B = 9785.861385 C =12877.443283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.246 4.246 3 C 0.164 3.836 4 O -0.323 6.323 5 C 0.101 3.899 6 C -0.126 4.126 7 C -0.113 4.113 8 C 0.123 3.877 9 N -0.680 5.680 10 C 0.706 3.294 11 O -0.613 6.613 12 N -0.604 5.604 13 C 0.262 3.738 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.957 3.043 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.187 3.813 23 C 0.093 3.907 24 C -0.158 4.158 25 C -0.081 4.081 26 C -0.164 4.164 27 C 0.079 3.921 28 N -0.503 5.503 29 C -0.097 4.097 30 C -0.181 4.181 31 H 0.258 0.742 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.413 0.587 37 H 0.017 0.983 38 H 0.024 0.976 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.174 0.826 46 H 0.122 0.878 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 11.582 -2.536 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.246 4.246 3 C 0.091 3.909 4 O -0.238 6.238 5 C 0.055 3.945 6 C -0.145 4.145 7 C -0.133 4.133 8 C 0.028 3.972 9 N -0.328 5.328 10 C 0.408 3.592 11 O -0.495 6.495 12 N -0.337 5.337 13 C 0.141 3.859 14 C -0.584 4.584 15 H 0.071 0.929 16 C -0.177 4.177 17 N -0.556 5.556 18 Si 0.782 3.218 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.199 1.199 22 C 0.062 3.938 23 C -0.045 4.045 24 C -0.179 4.179 25 C -0.107 4.107 26 C -0.184 4.184 27 C -0.079 4.079 28 N -0.213 5.213 29 C -0.118 4.118 30 C -0.200 4.200 31 H 0.275 0.725 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.152 0.848 43 H 0.181 0.819 44 H 0.189 0.811 45 H 0.191 0.809 46 H 0.140 0.860 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.790 11.349 -2.250 18.001 hybrid contribution 0.357 -0.462 0.500 0.769 sum -13.433 10.887 -1.750 17.379 Atomic orbital electron populations 1.25912 0.96715 0.97025 0.96242 1.22743 0.94361 1.03570 1.03939 1.19463 0.85124 0.95245 0.91113 1.86057 1.19044 1.65103 1.53635 1.18904 0.81752 0.97264 0.96549 1.20348 0.94004 1.00925 0.99244 1.20860 0.92297 1.01546 0.98631 1.17822 0.81868 1.00829 0.96642 1.42835 1.04517 1.15164 1.70328 1.15885 0.81660 0.83625 0.78032 1.90771 1.74484 1.26324 1.57893 1.47286 1.03141 1.12081 1.71162 1.18936 0.93597 0.78309 0.95056 1.21612 1.42366 1.00663 0.93769 0.92899 1.25632 0.94651 0.98394 0.99040 1.70011 1.42412 1.17614 1.25557 0.85629 0.78527 0.77788 0.79835 1.19743 1.20670 1.19871 1.20034 0.94609 0.86792 0.92331 1.21682 0.92022 0.93898 0.96879 1.22158 1.00092 0.96553 0.99094 1.21976 0.96493 0.99367 0.92835 1.22510 0.96108 0.97835 1.01899 1.23271 0.99401 0.92813 0.92379 1.67498 1.17061 1.30534 1.06255 1.20955 0.95198 0.98953 0.96684 1.21244 0.92648 1.03691 1.02426 0.72538 0.88324 0.88383 0.82964 0.83658 0.74783 0.96487 0.95744 0.92317 0.89833 0.88577 0.84786 0.81854 0.81143 0.80899 0.86027 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 19.25 74.32 1.43 -0.58 16 2 C -0.25 -4.66 13.73 31.12 0.43 -4.23 16 3 C 0.16 3.08 5.21 70.18 0.37 3.45 16 4 O -0.32 -7.94 10.10 -93.24 -0.94 -8.88 16 5 C 0.10 2.65 6.69 22.50 0.15 2.80 16 6 C -0.13 -3.28 9.98 22.35 0.22 -3.06 16 7 C -0.11 -3.27 9.96 22.38 0.22 -3.05 16 8 C 0.12 4.30 6.28 38.10 0.24 4.54 16 9 N -0.68 -26.74 5.23 -317.06 -1.66 -28.39 16 10 C 0.71 30.03 8.02 179.06 1.44 31.46 16 11 O -0.61 -26.47 13.54 -3.99 -0.05 -26.53 16 12 N -0.60 -26.27 2.44 -848.57 -2.07 -28.34 16 13 C 0.26 12.90 4.97 85.63 0.43 13.33 16 14 C -0.55 -28.70 9.39 25.60 0.24 -28.46 16 15 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 16 C 0.02 1.25 5.46 84.66 0.46 1.71 16 17 N -0.92 -50.95 13.29 21.45 0.28 -50.66 16 18 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.19 7.32 5.71 85.63 0.49 7.81 16 23 C 0.09 3.38 6.36 42.55 0.27 3.66 16 24 C -0.16 -4.89 9.72 22.36 0.22 -4.68 16 25 C -0.08 -1.92 10.18 22.47 0.23 -1.69 16 26 C -0.16 -3.59 10.11 22.36 0.23 -3.37 16 27 C 0.08 2.20 11.18 84.67 0.95 3.15 16 28 N -0.50 -18.47 10.27 -183.88 -1.89 -20.36 16 29 C -0.10 -3.25 8.65 22.38 0.19 -3.05 16 30 C -0.18 -4.85 9.03 22.35 0.20 -4.65 16 31 H 0.26 1.25 7.80 -4.43 -0.03 1.21 16 32 H 0.10 1.55 7.66 -2.38 -0.02 1.54 16 33 H 0.10 1.55 7.66 -2.39 -0.02 1.54 16 34 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 35 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 36 H 0.41 16.62 6.51 -92.70 -0.60 16.01 16 37 H 0.02 0.87 6.29 -2.38 -0.02 0.86 16 38 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.08 3.41 8.07 -2.39 -0.02 3.39 16 41 H 0.10 3.54 7.32 -2.39 -0.02 3.52 16 42 H 0.13 4.17 7.98 -2.91 -0.02 4.14 16 43 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 44 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 46 H 0.12 4.49 6.42 -2.91 -0.02 4.47 16 47 H 0.15 3.14 6.29 -2.91 -0.02 3.12 16 Total: -1.00 -69.07 412.09 4.50 -64.57 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: 0.40 Total: 39.09 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 8.40 Total: 15.09 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.33 Total: -127.75 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.00 Total: -35.41 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -69.07 4.50 -64.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089261864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.391 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds