Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36000 * 116.99691 * 2 1 4 4 C 1.38560 * 120.07059 * 0.02562 * 3 2 1 5 5 C 1.38250 * 119.99415 * 179.70991 * 4 3 2 6 6 C 1.38247 * 120.14825 * 0.54600 * 5 4 3 7 7 C 1.50699 * 119.92837 * 179.72970 * 6 5 4 8 8 N 1.46897 * 109.47025 * 269.72533 * 7 6 5 9 9 C 1.46903 * 110.99990 * 66.04490 * 8 7 6 10 10 C 1.50699 * 109.46993 * 198.86835 * 9 8 7 11 11 H 1.08004 * 119.99982 * 355.06784 * 10 9 8 12 12 C 1.37872 * 119.99882 * 175.07601 * 10 9 8 13 13 N 1.31514 * 120.00338 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00039 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46928 * 89.99576 * 14 12 10 16 16 H 1.48498 * 109.47308 * 209.99835 * 14 12 10 17 17 H 1.48502 * 109.47026 * 329.99581 * 14 12 10 18 18 C 1.46904 * 111.00021 * 189.99884 * 8 7 6 19 19 C 1.53003 * 109.47039 * 75.81323 * 18 8 7 20 20 N 1.46899 * 109.47060 * 175.36003 * 19 18 8 21 21 C 1.47013 * 110.99760 * 293.63369 * 20 19 18 22 22 C 1.53103 * 109.25625 * 177.60857 * 21 20 19 23 23 O 1.43009 * 109.25632 * 56.85105 * 22 21 20 24 24 C 1.43014 * 113.73886 * 301.32854 * 23 22 21 25 25 C 1.47014 * 111.00015 * 170.00078 * 20 19 18 26 26 C 1.38239 * 120.14370 * 359.44906 * 6 5 4 27 27 C 1.38563 * 120.00430 * 0.27913 * 26 6 5 28 28 O 1.35990 * 120.07584 * 179.97438 * 27 26 6 29 29 C 1.42895 * 117.00356 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47585 * 299.99892 * 1 2 3 31 31 H 1.09001 * 109.46975 * 60.00790 * 1 2 3 32 32 H 1.09002 * 109.47173 * 179.97438 * 1 2 3 33 33 H 1.07999 * 120.00444 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.92555 * 180.29898 * 5 4 3 35 35 H 1.09004 * 109.47119 * 149.72303 * 7 6 5 36 36 H 1.09004 * 109.46939 * 29.72590 * 7 6 5 37 37 H 1.08999 * 109.46819 * 318.86687 * 9 8 7 38 38 H 1.08997 * 109.47110 * 78.86755 * 9 8 7 39 39 H 0.97001 * 120.00480 * 179.97438 * 13 12 10 40 40 H 1.08994 * 109.46888 * 315.81671 * 18 8 7 41 41 H 1.09001 * 109.46981 * 195.81181 * 18 8 7 42 42 H 1.09007 * 109.47020 * 55.35993 * 19 18 8 43 43 H 1.08994 * 109.46930 * 295.36208 * 19 18 8 44 44 H 1.09001 * 109.51524 * 297.54479 * 21 20 19 45 45 H 1.09003 * 109.50886 * 57.67866 * 21 20 19 46 46 H 1.08998 * 109.50689 * 296.91081 * 22 21 20 47 47 H 1.09002 * 109.54166 * 176.81044 * 22 21 20 48 48 H 1.09000 * 109.50327 * 298.73823 * 24 23 22 49 49 H 1.08996 * 109.54043 * 178.63219 * 24 23 22 50 50 H 1.08995 * 109.50729 * 302.32667 * 25 20 19 51 51 H 1.09005 * 109.50409 * 62.41506 * 25 20 19 52 52 H 1.08011 * 120.00051 * 180.25309 * 26 6 5 53 53 H 1.08997 * 109.47607 * 300.00708 * 29 28 27 54 54 H 1.09008 * 109.46588 * 60.00438 * 29 28 27 55 55 H 1.08999 * 109.47681 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 0.0005 5 6 1.9222 3.6058 0.0066 6 6 3.3027 3.6800 0.0007 7 6 3.9834 5.0245 0.0012 8 7 4.2044 5.4619 -1.3836 9 6 2.9283 5.7164 -2.0653 10 6 3.1445 5.7055 -3.5566 11 1 4.1429 5.6069 -3.9568 12 6 2.0680 5.8215 -4.4102 13 7 0.8524 5.9412 -3.9229 14 14 2.3361 5.8086 -6.2588 15 1 2.2658 4.4123 -6.7595 16 1 1.2843 6.6242 -6.9173 17 1 3.6716 6.3791 -6.5693 18 6 5.0713 6.6470 -1.4293 19 6 6.5207 6.2288 -1.1739 20 7 7.4013 7.3944 -1.3292 21 6 7.4189 7.8591 -2.7238 22 6 8.2990 9.1074 -2.8289 23 8 9.6092 8.8031 -2.3430 24 6 9.6291 8.3479 -0.9874 25 6 8.7625 7.0920 -0.8636 26 6 4.0601 2.5235 0.0003 27 6 3.4359 1.2864 -0.0001 28 8 4.1795 0.1479 -0.0011 29 6 5.6002 0.3008 -0.0022 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2145 2.3196 0.0014 34 1 1.3340 4.5115 0.0119 35 1 4.9416 4.9464 0.5150 36 1 3.3535 5.7504 0.5155 37 1 2.2116 4.9405 -1.7963 38 1 2.5417 6.6892 -1.7613 39 1 0.0950 6.0232 -4.5234 40 1 4.7575 7.3564 -0.6637 41 1 4.9957 7.1147 -2.4110 42 1 6.8081 5.4584 -1.8894 43 1 6.6125 5.8365 -0.1611 44 1 7.8222 7.0745 -3.3640 45 1 6.4042 8.1016 -3.0396 46 1 7.8662 9.9094 -2.2309 47 1 8.3612 9.4231 -3.8704 48 1 9.2350 9.1278 -0.3358 49 1 10.6531 8.1138 -0.6965 50 1 8.7286 6.7745 0.1785 51 1 9.1871 6.2945 -1.4735 52 1 5.1385 2.5842 -0.0002 53 1 5.9058 0.8510 -0.8921 54 1 5.9071 0.8503 0.8878 55 1 6.0716 -0.6820 -0.0024 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089464455.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = -94.113206 kcal Electronic energy + Delta-G solvation = -34098.835514 eV Core-core repulsion = 29715.339919 eV Total energy + Delta-G solvation = -4383.495594 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 364.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.53597 -40.55714 -39.37355 -39.15490 -37.53385 -36.38507 -34.65632 -32.30810 -32.01388 -31.33592 -30.73891 -29.16954 -28.25291 -28.04673 -26.84818 -25.74351 -24.97974 -23.58074 -23.05823 -22.50151 -21.42026 -21.21066 -19.33549 -18.58533 -18.01127 -17.69624 -17.51200 -17.11954 -16.99468 -16.67144 -16.34899 -16.27715 -16.10360 -15.96915 -15.73136 -15.61584 -15.45132 -15.31811 -15.13063 -14.62091 -14.32202 -14.21276 -13.98325 -13.61377 -13.45362 -13.22756 -13.16759 -13.03048 -12.86167 -12.78174 -12.62341 -12.41918 -12.37758 -12.28543 -12.11908 -12.03994 -12.01329 -11.86049 -11.74596 -11.55292 -11.30784 -11.18098 -10.65035 -10.54944 -9.62179 -9.40458 -9.02504 -8.68227 -8.16474 -6.23577 0.35441 0.46029 1.37968 1.39274 1.48876 2.37327 2.39530 2.40206 2.60315 2.79353 2.97510 3.16301 3.57795 3.78769 3.88698 3.92709 3.98070 4.05589 4.10027 4.18862 4.20992 4.29826 4.34391 4.37520 4.39572 4.43411 4.44346 4.47604 4.48637 4.58494 4.59649 4.63876 4.69617 4.71861 4.75218 4.76280 4.81566 4.85618 4.92245 4.94767 5.04098 5.07469 5.16519 5.27204 5.32425 5.38373 5.65991 5.70068 5.74187 5.90416 6.02385 6.12556 6.13909 6.18746 6.42951 6.64033 6.65931 6.90148 7.43892 8.93460 Molecular weight = 364.22amu Principal moments of inertia in cm(-1) A = 0.007239 B = 0.003188 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.862327 B = 8780.810965 C =11488.699092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.078 3.922 4 C -0.173 4.173 5 C -0.112 4.112 6 C -0.072 4.072 7 C 0.098 3.902 8 N -0.534 5.534 9 C 0.202 3.798 10 C -0.512 4.512 11 H 0.053 0.947 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.073 3.927 19 C 0.077 3.923 20 N -0.542 5.542 21 C 0.015 3.985 22 C 0.069 3.931 23 O -0.404 6.404 24 C 0.062 3.938 25 C 0.019 3.981 26 C -0.148 4.148 27 C 0.081 3.919 28 O -0.328 6.328 29 C 0.019 3.981 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.031 0.969 37 H 0.032 0.968 38 H -0.043 1.043 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.057 0.943 42 H 0.029 0.971 43 H 0.087 0.913 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.120 0.880 50 H 0.103 0.897 51 H 0.035 0.965 52 H 0.152 0.848 53 H 0.054 0.946 54 H 0.068 0.932 55 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.283 -4.025 11.200 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.032 3.968 4 C -0.191 4.191 5 C -0.131 4.131 6 C -0.073 4.073 7 C -0.029 4.029 8 N -0.259 5.259 9 C 0.076 3.924 10 C -0.551 4.551 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.780 3.220 15 H -0.205 1.205 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.055 4.055 19 C -0.051 4.051 20 N -0.268 5.268 21 C -0.114 4.114 22 C -0.008 4.008 23 O -0.323 6.323 24 C -0.014 4.014 25 C -0.109 4.109 26 C -0.167 4.167 27 C 0.035 3.965 28 O -0.243 6.243 29 C -0.075 4.075 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.050 0.950 38 H -0.025 1.025 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.106 0.894 44 H 0.049 0.951 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.127 0.873 48 H 0.081 0.919 49 H 0.137 0.863 50 H 0.122 0.878 51 H 0.054 0.946 52 H 0.170 0.830 53 H 0.073 0.927 54 H 0.087 0.913 55 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.359 -4.362 11.082 16.458 hybrid contribution -1.088 0.351 -1.218 1.671 sum 10.271 -4.011 9.863 14.794 Atomic orbital electron populations 1.23306 0.76938 1.05448 1.01847 1.86088 1.22918 1.25855 1.89385 1.18398 0.89637 0.85428 1.03294 1.21139 1.00651 0.91038 1.06294 1.20874 0.94601 0.97190 1.00401 1.19560 0.93058 0.95113 0.99524 1.21043 0.99791 0.91850 0.90221 1.62007 1.16495 1.33846 1.13539 1.19538 0.86583 0.93206 0.93059 1.21386 0.93056 1.48539 0.92097 0.92841 1.25717 0.94901 0.95301 1.03156 1.70052 0.99007 1.51592 1.36305 0.85613 0.78083 0.77992 0.80339 1.20513 1.20716 1.19008 1.21851 0.92354 0.90898 1.00427 1.21913 0.91251 0.90481 1.01411 1.62169 1.10031 1.34243 1.20320 1.22817 1.01273 0.98073 0.89210 1.22690 0.82124 0.95092 1.00891 1.87938 1.28504 1.86336 1.29543 1.22830 1.01098 0.94658 0.82828 1.22859 0.87957 0.98014 1.02108 1.20977 1.00927 0.89694 1.05132 1.18354 0.88464 0.86517 1.03120 1.86094 1.20506 1.28305 1.89370 1.23315 0.76917 1.05269 1.02016 0.91532 0.92963 0.85926 0.83491 0.86729 0.88351 0.95101 0.95018 1.02548 0.92939 0.95320 0.92468 0.95258 0.89426 0.95073 0.90348 0.91843 0.87316 0.91870 0.86254 0.87833 0.94646 0.83007 0.92741 0.91327 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.33 -10.49 10.28 -79.69 -0.82 -11.31 16 3 C 0.08 2.70 6.70 22.57 0.15 2.86 16 4 C -0.17 -5.89 9.04 22.35 0.20 -5.68 16 5 C -0.11 -4.14 7.85 22.27 0.17 -3.96 16 6 C -0.07 -2.54 4.94 -19.86 -0.10 -2.64 16 7 C 0.10 3.35 4.94 85.56 0.42 3.77 16 8 N -0.53 -21.91 4.35 -905.35 -3.94 -25.85 16 9 C 0.20 10.42 4.58 85.56 0.39 10.81 16 10 C -0.51 -28.76 8.50 25.60 0.22 -28.55 16 11 H 0.05 3.00 7.72 -2.91 -0.02 2.98 16 12 C 0.01 0.42 5.46 84.65 0.46 0.88 16 13 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 14 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.07 2.67 4.85 86.30 0.42 3.09 16 19 C 0.08 2.24 5.00 86.30 0.43 2.68 16 20 N -0.54 -14.19 4.73 -895.21 -4.23 -18.42 16 21 C 0.01 0.40 5.44 86.32 0.47 0.87 16 22 C 0.07 1.59 7.01 72.02 0.50 2.09 16 23 O -0.40 -9.66 10.83 -148.98 -1.61 -11.28 16 24 C 0.06 1.15 7.01 72.01 0.50 1.66 16 25 C 0.02 0.38 5.64 86.31 0.49 0.86 16 26 C -0.15 -4.78 8.69 22.35 0.19 -4.59 16 27 C 0.08 2.74 6.70 22.57 0.15 2.90 16 28 O -0.33 -10.19 10.28 -79.57 -0.82 -11.01 16 29 C 0.02 0.40 9.81 113.37 1.11 1.51 16 30 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 31 H 0.05 1.19 7.67 -2.39 -0.02 1.17 16 32 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.15 4.30 6.30 -2.91 -0.02 4.28 16 34 H 0.11 4.41 7.67 -2.91 -0.02 4.38 16 35 H 0.10 2.71 6.65 -2.39 -0.02 2.69 16 36 H 0.03 1.07 8.06 -2.39 -0.02 1.05 16 37 H 0.03 1.74 5.01 -2.39 -0.01 1.73 16 38 H -0.04 -2.43 8.01 -2.39 -0.02 -2.45 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 41 H 0.06 2.40 5.37 -2.39 -0.01 2.38 16 42 H 0.03 0.94 8.12 -2.38 -0.02 0.92 16 43 H 0.09 2.17 6.84 -2.39 -0.02 2.15 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 2.42 6.30 -2.39 -0.02 2.40 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 51 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 52 H 0.15 4.07 6.30 -2.91 -0.02 4.05 16 53 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 54 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 55 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.11 429.11 -0.93 -72.04 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.87 Total: 23.94 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 7.31 Total: -9.91 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -7.89 Total: -99.19 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -3.25 Total: -33.60 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.11 -0.93 -72.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089464455.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.072 kcal (2) G-P(sol) polarization free energy of solvation -71.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds