Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47099 * 239.99962 * 3 2 1 5 5 H 1.48494 * 109.47539 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47193 * 120.00326 * 3 2 1 7 7 C 1.37874 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40222 * 66.45813 * 9 7 2 11 11 O 1.42104 * 106.40094 * 293.54012 * 9 7 2 12 12 N 1.65601 * 107.21925 * 179.97438 * 9 7 2 13 13 C 1.46504 * 120.00036 * 64.99747 * 12 9 7 14 14 H 1.08999 * 109.47161 * 335.00427 * 13 12 9 15 15 C 1.52995 * 109.47497 * 215.00019 * 13 12 9 16 16 C 1.50706 * 109.46956 * 64.99829 * 15 13 12 17 17 C 1.38229 * 120.00673 * 264.72723 * 16 15 13 18 18 C 1.38228 * 120.01152 * 179.77086 * 17 16 15 19 19 C 1.38266 * 120.02246 * 0.50293 * 18 17 16 20 20 C 1.38188 * 120.01547 * 359.75110 * 19 18 17 21 21 C 1.38333 * 120.00238 * 85.00045 * 16 15 13 22 22 Cl 1.73600 * 120.01591 * 359.95908 * 21 16 15 23 23 C 1.50699 * 109.46942 * 94.99960 * 13 12 9 24 24 C 1.38235 * 119.99907 * 39.72604 * 23 13 12 25 25 C 1.38242 * 119.99731 * 179.78709 * 24 23 13 26 26 C 1.38225 * 120.00121 * 0.44338 * 25 24 23 27 27 C 1.38241 * 120.00100 * 359.81142 * 26 25 24 28 28 C 1.38231 * 119.99913 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00072 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00149 * 245.00225 * 12 9 7 31 31 H 1.08999 * 109.46886 * 305.00577 * 15 13 12 32 32 H 1.08999 * 109.47559 * 184.99808 * 15 13 12 33 33 H 1.07998 * 119.99826 * 0.02562 * 17 16 15 34 34 H 1.08001 * 119.98847 * 180.23022 * 18 17 16 35 35 H 1.08003 * 119.99100 * 179.76751 * 19 18 17 36 36 H 1.08001 * 120.00808 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.00072 * 0.02562 * 24 23 13 38 38 H 1.08004 * 119.99664 * 180.27801 * 25 24 23 39 39 H 1.08003 * 120.00345 * 179.83754 * 26 25 24 40 40 H 1.07995 * 119.99789 * 180.02562 * 27 26 25 41 41 H 1.08001 * 119.99908 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2495 12 7 2.2482 -3.9355 -0.0019 13 6 3.1402 -4.1094 1.1471 14 1 3.2471 -3.1597 1.6712 15 6 4.5121 -4.5809 0.6611 16 6 5.1468 -3.5007 -0.1764 17 6 5.0218 -3.5299 -1.5527 18 6 5.5999 -2.5366 -2.3207 19 6 6.3123 -1.5190 -1.7134 20 6 6.4424 -1.4917 -0.3380 21 6 5.8595 -2.4829 0.4317 22 17 6.0220 -2.4489 2.1598 23 6 2.5585 -5.1370 2.0835 24 6 1.9457 -6.2670 1.5751 25 6 1.4161 -7.2118 2.4341 26 6 1.4911 -7.0221 3.8012 27 6 2.0993 -5.8895 4.3096 28 6 2.6329 -4.9470 3.4507 29 1 -0.4850 0.8400 0.0004 30 1 2.3165 -4.5322 -0.7636 31 1 4.3946 -5.4836 0.0615 32 1 5.1479 -4.7954 1.5200 33 1 4.4689 -4.3267 -2.0279 34 1 5.4989 -2.5577 -3.3958 35 1 6.7670 -0.7452 -2.3142 36 1 6.9986 -0.6965 0.1363 37 1 1.8841 -6.4136 0.5068 38 1 0.9412 -8.0968 2.0369 39 1 1.0750 -7.7589 4.4723 40 1 2.1583 -5.7416 5.3777 41 1 3.1084 -4.0623 3.8479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089826439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -55.260370 kcal Electronic energy + Delta-G solvation = -29019.178648 eV Core-core repulsion = 25015.611929 eV Total energy + Delta-G solvation = -4003.566719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.064 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.66737 -38.83764 -36.25754 -35.84041 -35.07980 -33.88177 -33.04864 -31.87994 -30.75389 -30.55104 -30.28292 -27.51302 -26.07875 -23.84237 -22.60575 -22.25984 -21.31301 -20.38873 -18.98937 -17.42035 -17.04477 -16.70435 -16.12219 -15.71523 -15.42114 -15.08729 -14.93350 -14.85787 -14.18430 -13.96935 -13.75513 -13.59799 -13.34604 -13.14783 -13.03697 -12.84109 -12.49612 -12.19236 -11.97314 -11.56076 -11.48027 -11.28059 -11.23163 -11.17582 -11.05937 -11.00332 -10.68840 -10.60633 -10.53768 -10.27841 -10.20906 -10.11662 -9.19634 -9.11626 -8.76213 -8.62034 -8.58887 -8.46584 -8.29200 -6.65559 -5.25794 1.31495 1.42214 1.66352 1.71621 2.31298 2.39043 3.10132 3.14345 3.20444 3.77402 4.06011 4.11638 4.68660 4.70085 4.75824 4.89805 5.06407 5.16021 5.17458 5.23440 5.34518 5.39460 5.42551 5.48446 5.56219 5.73462 5.77839 5.84952 5.86868 5.93094 6.06220 6.10922 6.26522 6.31359 6.36214 6.45327 6.54357 6.60195 6.74058 6.75647 6.78247 6.95314 7.05420 7.29805 7.37497 7.89252 8.04148 8.94786 10.28818 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005750 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.176647 B = 4868.449017 C = 6539.270339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.137 3.863 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -1.013 5.013 8 H 0.102 0.898 9 S 2.711 3.289 10 O -1.009 7.009 11 O -1.000 7.000 12 N -1.126 6.126 13 C 0.208 3.792 14 H 0.100 0.900 15 C -0.084 4.084 16 C -0.063 4.063 17 C -0.095 4.095 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.029 4.029 22 Cl -0.073 7.073 23 C -0.082 4.082 24 C -0.102 4.102 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.102 4.102 29 H 0.290 0.710 30 H 0.399 0.601 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.199 -9.184 1.538 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.080 4.080 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -1.146 5.146 8 H 0.120 0.880 9 S 2.811 3.189 10 O -1.000 7.000 11 O -0.990 6.990 12 N -0.878 5.878 13 C 0.099 3.901 14 H 0.118 0.882 15 C -0.123 4.123 16 C -0.064 4.064 17 C -0.113 4.113 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.056 4.056 22 Cl -0.044 7.044 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.140 4.140 28 C -0.120 4.120 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.067 -9.105 1.853 15.230 hybrid contribution 0.842 1.179 -0.196 1.462 sum 12.909 -7.926 1.657 15.238 Atomic orbital electron populations 1.69892 1.06759 1.30654 1.40396 1.24666 0.94310 1.00544 0.88528 0.86326 0.80070 0.80130 0.79910 1.18795 1.20221 1.18731 1.30477 1.05997 1.11589 1.66553 0.88007 1.00550 0.72123 0.73325 0.72905 1.93367 1.73064 1.87698 1.45823 1.93384 1.72629 1.87349 1.45611 1.56157 1.55337 1.50850 1.25498 1.19382 0.87486 0.97591 0.85620 0.88201 1.20975 0.95484 0.96257 0.99601 1.19596 0.96812 0.95774 0.94191 1.20980 0.98708 0.99383 0.92243 1.21204 0.96980 0.94324 1.00265 1.21041 0.99533 0.98642 0.93875 1.20978 1.00269 0.97695 0.93876 1.20764 1.02387 0.98040 0.84376 1.98350 1.96686 1.98121 1.11215 1.20299 0.98353 0.95504 0.94187 1.20912 0.97824 0.93647 0.99686 1.21064 1.00360 0.99284 0.93625 1.21051 1.00206 0.97925 0.95328 1.21052 0.98950 0.94559 0.99394 1.21019 0.99398 0.98837 0.92782 0.89969 0.76981 0.89947 0.89296 0.85217 0.85553 0.85522 0.85310 0.86290 0.86493 0.86637 0.86384 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.11 13.19 55.43 0.73 -24.38 16 2 C 0.14 3.83 5.46 -17.82 -0.10 3.74 16 3 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 7 C -1.01 -27.51 9.58 30.60 0.29 -27.22 16 8 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 9 S 2.71 71.44 4.93 -107.50 -0.53 70.91 16 10 O -1.01 -29.53 18.02 -57.17 -1.03 -30.56 16 11 O -1.00 -29.37 17.78 -57.17 -1.02 -30.39 16 12 N -1.13 -21.55 4.36 -5.88 -0.03 -21.57 16 13 C 0.21 3.53 2.36 -69.08 -0.16 3.37 16 14 H 0.10 1.91 7.51 -51.93 -0.39 1.52 16 15 C -0.08 -1.13 4.44 -27.88 -0.12 -1.26 16 16 C -0.06 -0.90 4.89 -104.59 -0.51 -1.41 16 17 C -0.09 -1.28 9.55 -39.59 -0.38 -1.66 16 18 C -0.11 -1.41 10.05 -39.57 -0.40 -1.81 16 19 C -0.11 -1.45 10.05 -39.59 -0.40 -1.85 16 20 C -0.11 -1.51 9.83 -39.55 -0.39 -1.90 16 21 C -0.03 -0.43 6.31 -39.50 -0.25 -0.68 16 22 Cl -0.07 -1.02 27.20 -51.86 -1.41 -2.43 16 23 C -0.08 -1.35 4.96 -104.62 -0.52 -1.87 16 24 C -0.10 -1.56 9.33 -39.58 -0.37 -1.93 16 25 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 26 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 27 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 28 C -0.10 -1.61 9.67 -39.58 -0.38 -2.00 16 29 H 0.29 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.40 6.39 8.63 -34.47 -0.30 6.09 16 31 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 32 H 0.09 1.10 7.13 -51.93 -0.37 0.73 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.12 1.62 7.55 -52.48 -0.40 1.23 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.12 1.81 8.04 -52.49 -0.42 1.39 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -36.25 382.39 -12.22 -48.47 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.80 Total: 11.20 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: -4.88 Total: -42.77 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.71 Total: -45.96 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.05 Total: -60.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 71.44 SS G_CDS: -0.53 Total: 70.91 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.41 Total: -2.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.25 -12.22 -48.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089826439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.791 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds