Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47099 * 239.99962 * 3 2 1 5 5 H 1.48494 * 109.47539 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47193 * 120.00326 * 3 2 1 7 7 C 1.37874 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40222 * 66.45813 * 9 7 2 11 11 O 1.42104 * 106.40094 * 293.54012 * 9 7 2 12 12 N 1.65601 * 107.21925 * 179.97438 * 9 7 2 13 13 C 1.46504 * 120.00036 * 64.99747 * 12 9 7 14 14 H 1.08999 * 109.47161 * 335.00427 * 13 12 9 15 15 C 1.52995 * 109.47497 * 215.00019 * 13 12 9 16 16 C 1.50706 * 109.46956 * 64.99829 * 15 13 12 17 17 C 1.38229 * 120.00673 * 264.72723 * 16 15 13 18 18 C 1.38228 * 120.01152 * 179.77086 * 17 16 15 19 19 C 1.38266 * 120.02246 * 0.50293 * 18 17 16 20 20 C 1.38188 * 120.01547 * 359.75110 * 19 18 17 21 21 C 1.38333 * 120.00238 * 85.00045 * 16 15 13 22 22 Cl 1.73600 * 120.01591 * 359.95908 * 21 16 15 23 23 C 1.50699 * 109.46942 * 94.99960 * 13 12 9 24 24 C 1.38235 * 119.99907 * 39.72604 * 23 13 12 25 25 C 1.38242 * 119.99731 * 179.78709 * 24 23 13 26 26 C 1.38225 * 120.00121 * 0.44338 * 25 24 23 27 27 C 1.38241 * 120.00100 * 359.81142 * 26 25 24 28 28 C 1.38231 * 119.99913 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00072 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00149 * 245.00225 * 12 9 7 31 31 H 1.08999 * 109.46886 * 305.00577 * 15 13 12 32 32 H 1.08999 * 109.47559 * 184.99808 * 15 13 12 33 33 H 1.07998 * 119.99826 * 0.02562 * 17 16 15 34 34 H 1.08001 * 119.98847 * 180.23022 * 18 17 16 35 35 H 1.08003 * 119.99100 * 179.76751 * 19 18 17 36 36 H 1.08001 * 120.00808 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.00072 * 0.02562 * 24 23 13 38 38 H 1.08004 * 119.99664 * 180.27801 * 25 24 23 39 39 H 1.08003 * 120.00345 * 179.83754 * 26 25 24 40 40 H 1.07995 * 119.99789 * 180.02562 * 27 26 25 41 41 H 1.08001 * 119.99908 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2495 12 7 2.2482 -3.9355 -0.0019 13 6 3.1402 -4.1094 1.1471 14 1 3.2471 -3.1597 1.6712 15 6 4.5121 -4.5809 0.6611 16 6 5.1468 -3.5007 -0.1764 17 6 5.0218 -3.5299 -1.5527 18 6 5.5999 -2.5366 -2.3207 19 6 6.3123 -1.5190 -1.7134 20 6 6.4424 -1.4917 -0.3380 21 6 5.8595 -2.4829 0.4317 22 17 6.0220 -2.4489 2.1598 23 6 2.5585 -5.1370 2.0835 24 6 1.9457 -6.2670 1.5751 25 6 1.4161 -7.2118 2.4341 26 6 1.4911 -7.0221 3.8012 27 6 2.0993 -5.8895 4.3096 28 6 2.6329 -4.9470 3.4507 29 1 -0.4850 0.8400 0.0004 30 1 2.3165 -4.5322 -0.7636 31 1 4.3946 -5.4836 0.0615 32 1 5.1479 -4.7954 1.5200 33 1 4.4689 -4.3267 -2.0279 34 1 5.4989 -2.5577 -3.3958 35 1 6.7670 -0.7452 -2.3142 36 1 6.9986 -0.6965 0.1363 37 1 1.8841 -6.4136 0.5068 38 1 0.9412 -8.0968 2.0369 39 1 1.0750 -7.7589 4.4723 40 1 2.1583 -5.7416 5.3777 41 1 3.1084 -4.0623 3.8479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089826439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -78.443251 kcal Electronic energy + Delta-G solvation = -29020.183933 eV Core-core repulsion = 25015.611929 eV Total energy + Delta-G solvation = -4004.572004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.064 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.77392 -39.90367 -37.40403 -37.32708 -36.98724 -36.08599 -35.15673 -33.05295 -31.91606 -31.58857 -31.47964 -28.64454 -28.22024 -25.01179 -23.64355 -23.36544 -22.36437 -21.61723 -20.99929 -19.31902 -18.35667 -17.98737 -17.75701 -17.02071 -16.94174 -16.42337 -16.28747 -15.99418 -15.82722 -15.63114 -15.15428 -14.80274 -14.63431 -14.27945 -14.14351 -14.04477 -13.89354 -13.66596 -13.41460 -13.25784 -13.01279 -12.69878 -12.51919 -12.46670 -12.40223 -12.36552 -12.34824 -12.20745 -12.16111 -11.98915 -11.78653 -11.54278 -11.22569 -10.99408 -10.33623 -9.79111 -9.72160 -9.60356 -9.40872 -8.73362 -7.42814 0.27352 0.34449 0.39446 0.59481 0.60421 1.24649 1.30758 1.32826 1.44731 2.19924 2.60568 2.74513 2.89517 3.09550 3.59346 3.75405 3.87798 3.99608 4.04856 4.17475 4.18619 4.28146 4.34610 4.36598 4.43213 4.51049 4.52756 4.70980 4.72835 4.75506 4.82265 4.96653 5.08694 5.10559 5.17343 5.25279 5.32145 5.36419 5.51783 5.58161 5.64250 5.68010 5.82540 5.95368 5.97720 6.20928 6.41508 6.82526 8.23040 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005750 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.176647 B = 4868.449017 C = 6539.270339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.078 3.922 3 Si 0.972 3.028 4 H -0.246 1.246 5 H -0.265 1.265 6 H -0.252 1.252 7 C -1.023 5.023 8 H 0.115 0.885 9 S 2.719 3.281 10 O -1.046 7.046 11 O -1.040 7.040 12 N -1.107 6.107 13 C 0.209 3.791 14 H 0.073 0.927 15 C -0.074 4.074 16 C -0.079 4.079 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.049 4.049 22 Cl -0.077 7.077 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.127 4.127 29 H 0.297 0.703 30 H 0.415 0.585 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.660 -9.712 1.247 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.790 3.210 4 H -0.169 1.169 5 H -0.190 1.190 6 H -0.176 1.176 7 C -1.157 5.157 8 H 0.133 0.867 9 S 2.820 3.180 10 O -1.037 7.037 11 O -1.029 7.029 12 N -0.865 5.865 13 C 0.102 3.898 14 H 0.092 0.908 15 C -0.113 4.113 16 C -0.080 4.080 17 C -0.125 4.125 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.075 4.075 22 Cl -0.048 7.048 23 C -0.105 4.105 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.146 4.146 29 H 0.107 0.893 30 H 0.250 0.750 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.532 -9.660 1.554 16.699 hybrid contribution 0.410 1.240 -0.074 1.308 sum 13.942 -8.420 1.480 16.354 Atomic orbital electron populations 1.69989 1.08682 1.32094 1.41998 1.25820 0.95115 1.04835 0.87670 0.85416 0.79153 0.75437 0.80946 1.16904 1.18956 1.17629 1.30743 1.06727 1.12202 1.66000 0.86665 0.99909 0.72562 0.74035 0.71468 1.93305 1.74869 1.88483 1.47023 1.93327 1.74447 1.88137 1.47009 1.55419 1.54551 1.49464 1.27049 1.19449 0.88769 0.96943 0.84675 0.90842 1.20915 0.93212 0.96893 1.00247 1.19767 0.97341 0.96107 0.94797 1.21316 0.98891 1.00215 0.92102 1.21590 0.96465 0.94011 1.01578 1.21418 0.99120 0.99167 0.93771 1.21270 1.00479 0.97918 0.94527 1.21022 1.03242 0.98812 0.84429 1.98341 1.96734 1.98160 1.11558 1.20336 0.99692 0.96077 0.94407 1.21164 0.98168 0.93796 1.00699 1.21459 0.99632 0.99738 0.93875 1.21477 0.99201 0.98083 0.95790 1.21391 0.98293 0.94358 1.00474 1.21209 1.00564 0.99641 0.93140 0.89332 0.75028 0.87564 0.88416 0.83509 0.83293 0.83016 0.84067 0.85258 0.83759 0.83504 0.84101 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.11 13.19 21.45 0.28 -53.83 16 2 C 0.08 4.39 5.46 84.65 0.46 4.85 16 3 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 7 C -1.02 -56.01 9.58 67.73 0.65 -55.36 16 8 H 0.12 5.80 7.81 -2.91 -0.02 5.78 16 9 S 2.72 146.21 4.93 -56.49 -0.28 145.93 16 10 O -1.05 -62.60 18.02 -128.00 -2.31 -64.90 16 11 O -1.04 -63.04 17.78 -128.00 -2.28 -65.31 16 12 N -1.11 -42.41 4.36 -172.52 -0.75 -43.16 16 13 C 0.21 7.13 2.36 44.24 0.10 7.23 16 14 H 0.07 2.89 7.51 -2.39 -0.02 2.87 16 15 C -0.07 -1.92 4.44 29.85 0.13 -1.79 16 16 C -0.08 -2.20 4.89 -19.84 -0.10 -2.30 16 17 C -0.11 -2.72 9.55 22.27 0.21 -2.50 16 18 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 19 C -0.12 -2.75 10.05 22.26 0.22 -2.53 16 20 C -0.12 -3.23 9.83 22.29 0.22 -3.01 16 21 C -0.05 -1.40 6.31 22.33 0.14 -1.26 16 22 Cl -0.08 -2.15 27.20 -2.72 -0.07 -2.23 16 23 C -0.10 -3.41 4.96 -19.87 -0.10 -3.51 16 24 C -0.12 -3.54 9.33 22.27 0.21 -3.34 16 25 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 27 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 28 C -0.13 -4.05 9.67 22.27 0.22 -3.83 16 29 H 0.30 16.23 8.31 -92.71 -0.77 15.46 16 30 H 0.42 13.07 8.63 -96.75 -0.84 12.24 16 31 H 0.11 2.20 8.05 -2.39 -0.02 2.18 16 32 H 0.10 2.36 7.13 -2.39 -0.02 2.35 16 33 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.13 3.38 7.55 -2.91 -0.02 3.36 16 38 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.12 3.67 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -79.89 382.39 0.12 -79.77 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.23 Total: 38.95 kcal Atomic # 6 Polarization: -82.31 SS G_CDS: 3.27 Total: -79.04 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -0.47 Total: -96.99 kcal Atomic # 8 Polarization: -125.63 SS G_CDS: -4.58 Total: -130.21 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 146.21 SS G_CDS: -0.28 Total: 145.93 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.07 Total: -2.23 kcal Total: -79.89 0.12 -79.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089826439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -79.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds