Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48508 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47281 * 300.00188 * 3 2 1 6 6 H 1.48492 * 109.46953 * 60.00335 * 3 2 1 7 7 C 1.37873 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00419 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00065 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40190 * 66.46110 * 9 7 2 11 11 O 1.42099 * 106.40566 * 293.54624 * 9 7 2 12 12 N 1.65601 * 107.21968 * 180.02562 * 9 7 2 13 13 C 1.46497 * 119.99818 * 65.00632 * 12 9 7 14 14 H 1.09003 * 109.47129 * 22.33460 * 13 12 9 15 15 C 1.53001 * 109.47482 * 142.33776 * 13 12 9 16 16 C 1.50697 * 109.47262 * 294.15380 * 15 13 12 17 17 C 1.38235 * 120.00525 * 271.61062 * 16 15 13 18 18 C 1.38220 * 120.01373 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.02317 * 0.02562 * 18 17 16 20 20 C 1.38186 * 120.01543 * 359.97438 * 19 18 17 21 21 C 1.38335 * 120.00570 * 91.60587 * 16 15 13 22 22 Cl 1.73595 * 120.01559 * 0.25516 * 21 16 15 23 23 C 1.50709 * 109.46746 * 262.33788 * 13 12 9 24 24 C 1.38227 * 119.99998 * 319.72783 * 23 13 12 25 25 C 1.38236 * 119.99850 * 179.81132 * 24 23 13 26 26 C 1.38232 * 119.99868 * 0.39648 * 25 24 23 27 27 C 1.38231 * 120.00000 * 359.85353 * 26 25 24 28 28 C 1.38229 * 120.00455 * 359.96068 * 27 26 25 29 29 H 0.97002 * 120.00223 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00102 * 245.00142 * 12 9 7 31 31 H 1.08994 * 109.46958 * 174.14749 * 15 13 12 32 32 H 1.09004 * 109.46811 * 54.15235 * 15 13 12 33 33 H 1.08002 * 119.99222 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.98766 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.98941 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.00512 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.99966 * 359.97438 * 24 23 13 38 38 H 1.08003 * 119.99625 * 180.22812 * 25 24 23 39 39 H 1.08005 * 120.00129 * 179.83761 * 26 25 24 40 40 H 1.08005 * 119.99823 * 179.97438 * 27 26 25 41 41 H 1.08000 * 120.00416 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2493 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1089 1.1494 14 1 2.6887 -3.6517 2.0304 15 6 3.3578 -5.6015 1.4047 16 6 2.0582 -6.2338 1.8314 17 6 1.7083 -6.2600 3.1685 18 6 0.5165 -6.8403 3.5601 19 6 -0.3261 -7.3954 2.6148 20 6 0.0225 -7.3698 1.2778 21 6 1.2150 -6.7880 0.8850 22 17 1.6566 -6.7612 -0.7936 23 6 4.4636 -3.4490 0.8628 24 6 5.0290 -3.5514 -0.3944 25 6 6.2418 -2.9429 -0.6584 26 6 6.8931 -2.2389 0.3372 27 6 6.3300 -2.1409 1.5959 28 6 5.1154 -2.7462 1.8588 29 1 -0.4850 0.8400 0.0004 30 1 2.3172 -4.5325 -0.7618 31 1 4.1004 -5.7305 2.1921 32 1 3.7111 -6.0786 0.4905 33 1 2.3664 -5.8269 3.9073 34 1 0.2435 -6.8602 4.6047 35 1 -1.2574 -7.8484 2.9213 36 1 -0.6360 -7.8031 0.5396 37 1 4.5220 -4.1046 -1.1711 38 1 6.6818 -3.0198 -1.6417 39 1 7.8419 -1.7657 0.1318 40 1 6.8391 -1.5913 2.3738 41 1 4.6758 -2.6700 2.8423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089826441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = -53.859135 kcal Electronic energy + Delta-G solvation = -28983.679599 eV Core-core repulsion = 24980.173642 eV Total energy + Delta-G solvation = -4003.505957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.064 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.69026 -38.85749 -36.33684 -35.81708 -35.03725 -33.85386 -33.01864 -31.95414 -30.71194 -30.59789 -30.25119 -27.51082 -26.03355 -23.90341 -22.60390 -22.26598 -21.33987 -20.35134 -18.94566 -17.50129 -17.04843 -16.69694 -16.13973 -15.62856 -15.42472 -15.17986 -14.94288 -14.85741 -14.16420 -13.96910 -13.77021 -13.63417 -13.37183 -13.12847 -13.03026 -12.84020 -12.42896 -12.24845 -11.95959 -11.69060 -11.47923 -11.38961 -11.19850 -11.11626 -11.09148 -10.95237 -10.71449 -10.54265 -10.46334 -10.22312 -10.19426 -10.08900 -9.19418 -9.07785 -8.79864 -8.63172 -8.59726 -8.39588 -8.30734 -6.63309 -5.22828 1.26921 1.36476 1.66378 1.72710 2.27611 2.44290 3.08587 3.17084 3.26223 3.71939 4.07089 4.13829 4.67702 4.70815 4.76315 4.91272 5.01852 5.14550 5.17607 5.24724 5.29349 5.39456 5.42925 5.46928 5.57044 5.65813 5.80615 5.83239 5.87254 5.93381 6.02739 6.12021 6.25313 6.32047 6.32951 6.43921 6.50498 6.58870 6.74941 6.77322 6.80844 6.90514 7.07583 7.30361 7.40350 7.96000 8.10337 8.97815 10.30818 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.005089 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.577472 B = 5500.539649 C = 6984.361199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.135 3.865 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -1.013 5.013 8 H 0.105 0.895 9 S 2.711 3.289 10 O -1.007 7.007 11 O -1.005 7.005 12 N -1.127 6.127 13 C 0.206 3.794 14 H 0.103 0.897 15 C -0.087 4.087 16 C -0.062 4.062 17 C -0.101 4.101 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.027 4.027 22 Cl -0.068 7.068 23 C -0.087 4.087 24 C -0.096 4.096 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.288 0.712 30 H 0.400 0.600 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 -12.610 5.276 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.082 4.082 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.197 1.197 7 C -1.147 5.147 8 H 0.123 0.877 9 S 2.811 3.189 10 O -0.998 6.998 11 O -0.995 6.995 12 N -0.882 5.882 13 C 0.097 3.903 14 H 0.121 0.879 15 C -0.126 4.126 16 C -0.063 4.063 17 C -0.119 4.119 18 C -0.130 4.130 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.053 4.053 22 Cl -0.039 7.039 23 C -0.089 4.089 24 C -0.114 4.114 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.099 0.901 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.270 -12.566 5.274 15.941 hybrid contribution 0.943 1.245 -0.622 1.681 sum 9.214 -11.320 4.652 15.319 Atomic orbital electron populations 1.69915 1.06767 1.30407 1.40729 1.24706 0.94336 1.00659 0.88547 0.86225 0.80757 0.80745 0.78465 1.18451 1.19724 1.19688 1.30620 1.06308 1.11615 1.66160 0.87657 1.00528 0.72172 0.73306 0.72932 1.93368 1.73117 1.87654 1.45646 1.93353 1.72811 1.87515 1.45808 1.56266 1.54632 1.51125 1.26159 1.19423 0.87178 0.93484 0.90197 0.87912 1.21007 0.93794 0.94714 1.03041 1.19647 0.96538 0.97414 0.92671 1.20996 0.97359 0.98947 0.94618 1.21191 0.94246 0.97707 0.99826 1.21052 0.99721 1.00173 0.92264 1.21027 0.95129 0.99852 0.96884 1.20786 0.96681 1.03070 0.84789 1.98335 1.92675 1.96798 1.16099 1.20336 0.96106 0.98201 0.94214 1.20922 0.94843 0.99237 0.96402 1.21075 0.95734 0.98435 0.98881 1.21055 0.99937 0.99743 0.93674 1.21038 0.96089 0.99959 0.96976 1.21016 0.95074 0.97189 0.99174 0.90120 0.76565 0.89364 0.89691 0.85042 0.85533 0.85356 0.85086 0.86237 0.86492 0.86718 0.86453 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.44 13.19 55.43 0.73 -24.71 16 2 C 0.13 3.83 5.46 -17.82 -0.10 3.74 16 3 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -1.01 -28.28 9.72 30.60 0.30 -27.98 16 8 H 0.11 2.75 7.28 -52.49 -0.38 2.37 16 9 S 2.71 73.41 4.99 -107.50 -0.54 72.87 16 10 O -1.01 -30.46 18.02 -57.17 -1.03 -31.49 16 11 O -1.00 -29.47 17.36 -57.17 -0.99 -30.46 16 12 N -1.13 -22.89 3.98 -5.88 -0.02 -22.92 16 13 C 0.21 3.50 2.49 -69.08 -0.17 3.33 16 14 H 0.10 1.88 7.35 -51.93 -0.38 1.50 16 15 C -0.09 -1.17 4.62 -27.88 -0.13 -1.30 16 16 C -0.06 -0.90 4.94 -104.59 -0.52 -1.42 16 17 C -0.10 -1.32 9.71 -39.59 -0.38 -1.71 16 18 C -0.11 -1.36 10.05 -39.58 -0.40 -1.76 16 19 C -0.11 -1.40 10.05 -39.59 -0.40 -1.80 16 20 C -0.11 -1.53 9.83 -39.55 -0.39 -1.91 16 21 C -0.03 -0.41 6.10 -39.50 -0.24 -0.65 16 22 Cl -0.07 -1.01 24.45 -51.86 -1.27 -2.28 16 23 C -0.09 -1.40 4.43 -104.62 -0.46 -1.86 16 24 C -0.10 -1.48 9.32 -39.59 -0.37 -1.85 16 25 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 26 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 27 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 28 C -0.11 -1.58 9.67 -39.58 -0.38 -1.97 16 29 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 30 H 0.40 7.47 5.92 -34.47 -0.20 7.27 16 31 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.08 1.09 6.83 -51.93 -0.35 0.73 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.12 1.76 7.50 -52.49 -0.39 1.37 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.12 1.63 8.04 -52.49 -0.42 1.21 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -36.68 375.11 -11.98 -48.66 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.65 Total: 11.98 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: -4.84 Total: -43.42 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.71 Total: -47.62 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -2.02 Total: -61.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.54 Total: 72.87 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.27 Total: -2.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.68 -11.98 -48.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089826441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.199 kcal (2) G-P(sol) polarization free energy of solvation -36.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds