Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48508 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47281 * 300.00188 * 3 2 1 6 6 H 1.48492 * 109.46953 * 60.00335 * 3 2 1 7 7 C 1.37873 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00419 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00065 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40190 * 66.46110 * 9 7 2 11 11 O 1.42099 * 106.40566 * 293.54624 * 9 7 2 12 12 N 1.65601 * 107.21968 * 180.02562 * 9 7 2 13 13 C 1.46497 * 119.99818 * 65.00632 * 12 9 7 14 14 H 1.09003 * 109.47129 * 22.33460 * 13 12 9 15 15 C 1.53001 * 109.47482 * 142.33776 * 13 12 9 16 16 C 1.50697 * 109.47262 * 294.15380 * 15 13 12 17 17 C 1.38235 * 120.00525 * 271.61062 * 16 15 13 18 18 C 1.38220 * 120.01373 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.02317 * 0.02562 * 18 17 16 20 20 C 1.38186 * 120.01543 * 359.97438 * 19 18 17 21 21 C 1.38335 * 120.00570 * 91.60587 * 16 15 13 22 22 Cl 1.73595 * 120.01559 * 0.25516 * 21 16 15 23 23 C 1.50709 * 109.46746 * 262.33788 * 13 12 9 24 24 C 1.38227 * 119.99998 * 319.72783 * 23 13 12 25 25 C 1.38236 * 119.99850 * 179.81132 * 24 23 13 26 26 C 1.38232 * 119.99868 * 0.39648 * 25 24 23 27 27 C 1.38231 * 120.00000 * 359.85353 * 26 25 24 28 28 C 1.38229 * 120.00455 * 359.96068 * 27 26 25 29 29 H 0.97002 * 120.00223 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00102 * 245.00142 * 12 9 7 31 31 H 1.08994 * 109.46958 * 174.14749 * 15 13 12 32 32 H 1.09004 * 109.46811 * 54.15235 * 15 13 12 33 33 H 1.08002 * 119.99222 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.98766 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.98941 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.00512 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.99966 * 359.97438 * 24 23 13 38 38 H 1.08003 * 119.99625 * 180.22812 * 25 24 23 39 39 H 1.08005 * 120.00129 * 179.83761 * 26 25 24 40 40 H 1.08005 * 119.99823 * 179.97438 * 27 26 25 41 41 H 1.08000 * 120.00416 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2493 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1089 1.1494 14 1 2.6887 -3.6517 2.0304 15 6 3.3578 -5.6015 1.4047 16 6 2.0582 -6.2338 1.8314 17 6 1.7083 -6.2600 3.1685 18 6 0.5165 -6.8403 3.5601 19 6 -0.3261 -7.3954 2.6148 20 6 0.0225 -7.3698 1.2778 21 6 1.2150 -6.7880 0.8850 22 17 1.6566 -6.7612 -0.7936 23 6 4.4636 -3.4490 0.8628 24 6 5.0290 -3.5514 -0.3944 25 6 6.2418 -2.9429 -0.6584 26 6 6.8931 -2.2389 0.3372 27 6 6.3300 -2.1409 1.5959 28 6 5.1154 -2.7462 1.8588 29 1 -0.4850 0.8400 0.0004 30 1 2.3172 -4.5325 -0.7618 31 1 4.1004 -5.7305 2.1921 32 1 3.7111 -6.0786 0.4905 33 1 2.3664 -5.8269 3.9073 34 1 0.2435 -6.8602 4.6047 35 1 -1.2574 -7.8484 2.9213 36 1 -0.6360 -7.8031 0.5396 37 1 4.5220 -4.1046 -1.1711 38 1 6.6818 -3.0198 -1.6417 39 1 7.8419 -1.7657 0.1318 40 1 6.8391 -1.5913 2.3738 41 1 4.6758 -2.6700 2.8423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089826441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -77.334827 kcal Electronic energy + Delta-G solvation = -28984.697582 eV Core-core repulsion = 24980.173642 eV Total energy + Delta-G solvation = -4004.523939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.064 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.79163 -39.91767 -37.46816 -37.43493 -36.94403 -36.10109 -35.16428 -33.13151 -31.85719 -31.60937 -31.47751 -28.65545 -28.20891 -25.06963 -23.63588 -23.35524 -22.38677 -21.56884 -20.99828 -19.39068 -18.39573 -18.02586 -17.77067 -17.04869 -16.87331 -16.47081 -16.29472 -16.06757 -15.81088 -15.61490 -15.25337 -14.82772 -14.62844 -14.28606 -14.13076 -14.01957 -13.96837 -13.58852 -13.47773 -13.17025 -13.04382 -12.85409 -12.57237 -12.51553 -12.49720 -12.38345 -12.30310 -12.14849 -12.10213 -12.02750 -11.77044 -11.55582 -11.26178 -10.96435 -10.34687 -9.80854 -9.68807 -9.63169 -9.42230 -8.74055 -7.44278 0.22560 0.33757 0.35679 0.60879 0.63158 1.16505 1.30069 1.31499 1.49303 2.20438 2.58973 2.69321 2.90618 3.10897 3.57986 3.75204 3.85478 4.00710 4.04321 4.15229 4.19388 4.28774 4.33498 4.37617 4.41565 4.46962 4.53408 4.68633 4.72944 4.77043 4.82550 4.95047 5.03188 5.13280 5.19246 5.28100 5.31053 5.33489 5.47947 5.52026 5.67491 5.71865 5.85534 5.94056 5.96658 6.23290 6.34410 6.81326 8.22678 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.005089 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.577472 B = 5500.539649 C = 6984.361199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.982 3.018 4 H -0.248 1.248 5 H -0.261 1.261 6 H -0.256 1.256 7 C -1.026 5.026 8 H 0.118 0.882 9 S 2.716 3.284 10 O -1.050 7.050 11 O -1.037 7.037 12 N -1.111 6.111 13 C 0.203 3.797 14 H 0.086 0.914 15 C -0.077 4.077 16 C -0.083 4.083 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.052 4.052 22 Cl -0.078 7.078 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.121 4.121 29 H 0.297 0.703 30 H 0.407 0.593 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.747 -11.877 6.575 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.801 3.199 4 H -0.171 1.171 5 H -0.186 1.186 6 H -0.181 1.181 7 C -1.160 5.160 8 H 0.136 0.864 9 S 2.817 3.183 10 O -1.041 7.041 11 O -1.027 7.027 12 N -0.871 5.871 13 C 0.096 3.904 14 H 0.104 0.896 15 C -0.116 4.116 16 C -0.083 4.083 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.148 4.148 21 C -0.079 4.079 22 Cl -0.049 7.049 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.139 4.139 29 H 0.107 0.893 30 H 0.244 0.756 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.624 -11.862 6.572 17.228 hybrid contribution 0.230 0.923 -0.978 1.364 sum 10.855 -10.939 5.595 16.395 Atomic orbital electron populations 1.70006 1.08736 1.32051 1.42042 1.25929 0.95225 1.05112 0.87637 0.85214 0.79709 0.75598 0.79417 1.17066 1.18589 1.18055 1.30871 1.06959 1.12196 1.65935 0.86398 1.00001 0.72706 0.74055 0.71580 1.93298 1.75109 1.88502 1.47177 1.93299 1.74407 1.88220 1.46751 1.55651 1.54246 1.49501 1.27704 1.19615 0.86934 0.95914 0.87964 0.89624 1.20971 0.94305 0.92044 1.04286 1.19888 0.96995 0.98075 0.93387 1.21405 0.98240 0.98794 0.94532 1.21644 0.93694 0.96600 1.01423 1.21476 1.00790 0.99623 0.91636 1.21342 0.95100 1.00232 0.98154 1.21087 0.97748 1.04490 0.84540 1.98318 1.92796 1.96848 1.16970 1.20277 0.95802 0.99381 0.95089 1.21057 0.95887 1.00185 0.96261 1.21386 0.95178 0.97986 1.00237 1.21454 1.00824 0.98937 0.93225 1.21402 0.95530 0.99408 0.97941 1.21261 0.95901 0.97294 0.99480 0.89279 0.75604 0.86424 0.89291 0.82781 0.82511 0.82528 0.84151 0.86580 0.84469 0.83828 0.83803 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.72 13.19 21.45 0.28 -54.43 16 2 C 0.07 4.17 5.46 84.65 0.46 4.63 16 3 Si 0.98 42.39 29.54 68.60 2.03 44.41 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -1.03 -57.71 9.72 67.73 0.66 -57.05 16 8 H 0.12 6.13 7.28 -2.91 -0.02 6.11 16 9 S 2.72 151.51 4.99 -56.49 -0.28 151.23 16 10 O -1.05 -66.07 18.02 -128.00 -2.31 -68.37 16 11 O -1.04 -62.86 17.36 -128.00 -2.22 -65.08 16 12 N -1.11 -46.27 3.98 -172.51 -0.69 -46.96 16 13 C 0.20 6.93 2.49 44.25 0.11 7.04 16 14 H 0.09 3.19 7.35 -2.39 -0.02 3.17 16 15 C -0.08 -2.06 4.62 29.85 0.14 -1.92 16 16 C -0.08 -2.39 4.94 -19.84 -0.10 -2.49 16 17 C -0.11 -2.80 9.71 22.26 0.22 -2.59 16 18 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 19 C -0.12 -2.77 10.05 22.26 0.22 -2.54 16 20 C -0.13 -3.61 9.83 22.29 0.22 -3.39 16 21 C -0.05 -1.62 6.10 22.33 0.14 -1.48 16 22 Cl -0.08 -2.41 24.45 -2.72 -0.07 -2.48 16 23 C -0.10 -3.26 4.43 -19.86 -0.09 -3.35 16 24 C -0.12 -3.49 9.32 22.27 0.21 -3.29 16 25 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 26 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 27 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 28 C -0.12 -3.41 9.67 22.27 0.22 -3.20 16 29 H 0.30 16.27 8.31 -92.71 -0.77 15.50 16 30 H 0.41 15.76 5.92 -96.75 -0.57 15.19 16 31 H 0.12 2.39 8.09 -2.39 -0.02 2.37 16 32 H 0.09 2.27 6.83 -2.38 -0.02 2.25 16 33 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.12 3.45 7.50 -2.91 -0.02 3.43 16 38 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.13 3.33 8.04 -2.91 -0.02 3.31 16 Total: -1.00 -81.17 375.11 0.53 -80.63 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: 0.49 Total: 41.80 kcal Atomic # 6 Polarization: -84.05 SS G_CDS: 3.30 Total: -80.75 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -0.40 Total: -101.39 kcal Atomic # 8 Polarization: -128.93 SS G_CDS: -4.53 Total: -133.45 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 151.51 SS G_CDS: -0.28 Total: 151.23 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.07 Total: -2.48 kcal Total: -81.17 0.53 -80.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089826441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.298 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds