Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31279 * 1 3 3 Si 1.86792 * 119.99922 * 2 1 4 4 H 1.48497 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47196 * 299.99536 * 3 2 1 6 6 H 1.48499 * 109.47589 * 59.99731 * 3 2 1 7 7 C 1.39058 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99571 * 189.98942 * 7 2 1 9 9 N 1.37202 * 120.00147 * 9.99509 * 7 2 1 10 10 C 1.36320 * 125.73396 * 20.78016 * 9 7 2 11 11 C 1.35287 * 108.79857 * 180.26701 * 10 9 7 12 12 C 1.40246 * 107.93804 * 359.73878 * 11 10 9 13 13 C 1.37807 * 107.19129 * 359.97438 * 12 11 10 14 14 C 1.46728 * 126.23090 * 180.02562 * 13 12 11 15 15 N 1.32431 * 126.60938 * 0.29298 * 14 13 12 16 16 C 1.34846 * 105.47141 * 180.16800 * 15 14 13 17 17 C 1.48368 * 126.28562 * 179.88239 * 16 15 14 18 18 C 1.39390 * 120.05523 * 359.44147 * 17 16 15 19 19 C 1.37886 * 119.93288 * 179.74584 * 18 17 16 20 20 C 1.38862 * 120.05913 * 0.54914 * 19 18 17 21 21 O 1.35835 * 119.93398 * 179.72516 * 20 19 18 22 22 C 1.42897 * 117.00194 * 359.97438 * 21 20 19 23 23 F 1.39898 * 109.47136 * 59.99741 * 22 21 20 24 24 F 1.39896 * 109.47446 * 180.02562 * 22 21 20 25 25 F 1.39906 * 109.47209 * 300.00099 * 22 21 20 26 26 C 1.38865 * 120.12740 * 359.69964 * 20 19 18 27 27 C 1.37874 * 120.06355 * 0.02652 * 26 20 19 28 28 N 1.30933 * 107.43595 * 359.62544 * 16 15 14 29 29 O 1.21269 * 110.43109 * 0.23584 * 28 16 15 30 30 H 0.96998 * 120.00138 * 0.02562 * 1 2 3 31 31 H 1.07992 * 125.60398 * 0.02562 * 10 9 7 32 32 H 1.07997 * 126.02984 * 179.71109 * 11 10 9 33 33 H 1.08000 * 126.40524 * 179.97438 * 12 11 10 34 34 H 1.07990 * 120.03616 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.96778 * 180.25446 * 19 18 17 36 36 H 1.07999 * 119.96633 * 179.97438 * 26 20 19 37 37 H 1.07994 * 120.03037 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 3.7067 1.3464 -0.0006 5 1 1.8880 2.3964 -1.2126 6 1 1.8880 2.3965 1.2124 7 6 2.0080 -1.2043 0.0005 8 1 3.0758 -1.2113 0.1628 9 7 1.3376 -2.3836 -0.2052 10 6 0.1185 -2.5128 -0.8012 11 6 -0.2209 -3.8223 -0.8202 12 6 0.8200 -4.5470 -0.2217 13 6 1.7860 -3.6384 0.1528 14 6 3.0571 -3.9483 0.8171 15 7 3.4945 -5.1491 1.1644 16 6 4.6952 -4.9414 1.7419 17 6 5.5910 -5.9821 2.3038 18 6 5.2095 -7.3224 2.2730 19 6 6.0464 -8.2880 2.7912 20 6 7.2630 -7.9251 3.3535 21 8 8.0830 -8.8779 3.8683 22 6 7.6296 -10.2312 3.7975 23 9 7.4329 -10.5877 2.4590 24 9 8.5882 -11.0747 4.3691 25 9 6.4236 -10.3561 4.4954 26 6 7.6433 -6.5900 3.3902 27 6 6.8131 -5.6208 2.8685 28 7 4.9279 -3.6533 1.7110 29 8 4.0039 -3.0687 1.1865 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4801 -1.7026 -1.1905 32 1 -1.1328 -4.2364 -1.2244 33 1 0.8575 -5.6171 -0.0808 34 1 4.2611 -7.6047 1.8405 35 1 5.7531 -9.3271 2.7639 36 1 8.5900 -6.3106 3.8285 37 1 7.1095 -4.5827 2.8969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090610234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -51.882356 kcal Electronic energy + Delta-G solvation = -30948.000791 eV Core-core repulsion = 25858.863449 eV Total energy + Delta-G solvation = -5089.137343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.077 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.79711 -48.52493 -48.38036 -44.67957 -40.55100 -39.85510 -38.14141 -35.11156 -33.80721 -32.45931 -31.48300 -30.58258 -30.05513 -27.62414 -26.51117 -25.18975 -24.24256 -23.63613 -22.62408 -21.74318 -20.10581 -19.86946 -19.50549 -19.46236 -19.16088 -18.45956 -17.36214 -16.99756 -16.58194 -15.91005 -15.79303 -15.59198 -15.28878 -15.12762 -14.85488 -14.78919 -14.72604 -14.68349 -14.49454 -14.33288 -13.66579 -13.59890 -13.39275 -13.27592 -12.84739 -12.79965 -12.55428 -12.19124 -11.96297 -11.57262 -11.39902 -11.38693 -11.21840 -10.93513 -10.75619 -10.61027 -10.37700 -10.05458 -9.48159 -9.40461 -8.54738 -8.00940 -7.07220 -6.77006 -4.66303 0.56389 0.99310 1.11152 1.59290 2.47639 2.56793 2.86440 2.93975 3.01087 3.40724 3.46636 3.50778 3.60584 3.66655 3.77318 3.78576 4.14969 4.23845 4.33068 4.47096 4.69976 4.76811 4.99329 5.04670 5.29368 5.44283 5.66141 5.77467 5.89393 6.03955 6.23161 6.34187 6.39262 6.48918 6.58589 6.64118 6.81585 6.89613 7.24756 7.34087 7.61471 8.10225 8.24958 8.65122 8.83453 9.16152 9.98420 Molecular weight = 365.08amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.001973 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.742229 B =14188.808761 C =15297.887412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.049 3.951 3 Si 0.942 3.058 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.118 0.882 9 N -0.215 5.215 10 C 0.015 3.985 11 C -0.243 4.243 12 C -0.147 4.147 13 C -0.049 4.049 14 C 0.314 3.686 15 N -0.506 5.506 16 C 0.204 3.796 17 C -0.017 4.017 18 C -0.036 4.036 19 C -0.192 4.192 20 C 0.110 3.890 21 O -0.310 6.310 22 C 0.603 3.397 23 F -0.164 7.164 24 F -0.133 7.133 25 F -0.164 7.164 26 C -0.124 4.124 27 C -0.051 4.051 28 N -0.402 5.402 29 O 0.072 5.928 30 H 0.285 0.715 31 H 0.172 0.828 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 -13.137 5.438 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.135 0.865 9 N 0.128 4.872 10 C -0.130 4.130 11 C -0.265 4.265 12 C -0.175 4.175 13 C -0.163 4.163 14 C 0.104 3.896 15 N -0.242 5.242 16 C -0.066 4.066 17 C -0.019 4.019 18 C -0.055 4.055 19 C -0.211 4.211 20 C 0.067 3.933 21 O -0.230 6.230 22 C 0.513 3.487 23 F -0.146 7.146 24 F -0.114 7.114 25 F -0.146 7.146 26 C -0.143 4.143 27 C -0.071 4.071 28 N -0.115 5.115 29 O 0.016 5.984 30 H 0.096 0.904 31 H 0.189 0.811 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.545 -12.757 5.966 18.861 hybrid contribution -0.030 0.526 0.023 0.528 sum 12.515 -12.231 5.988 18.496 Atomic orbital electron populations 1.69853 1.06581 1.29638 1.39270 1.25655 0.95752 1.01022 0.93907 0.85606 0.80131 0.79015 0.78738 1.18173 1.19470 1.19624 1.20354 0.94435 0.81879 1.50002 0.86452 1.40322 1.12916 1.03426 1.30541 1.22106 0.89577 0.97392 1.03893 1.20529 1.00666 0.93276 1.12072 1.20615 0.93595 0.96995 1.06338 1.16807 0.93103 0.87351 1.19073 1.25089 0.90627 0.81982 0.91898 1.72283 1.09252 1.21875 1.20763 1.23489 0.92523 0.90289 1.00311 1.17421 0.93022 0.90515 1.00947 1.21067 0.99373 0.90412 0.94697 1.21451 0.94243 1.01312 1.04088 1.18832 0.89888 0.87581 0.96967 1.86390 1.45970 1.13057 1.77553 1.19354 0.74540 0.80059 0.74768 1.93315 1.94619 1.92068 1.34557 1.93306 1.64377 1.68929 1.84800 1.93318 1.46070 1.95697 1.79478 1.20275 1.01879 0.88116 1.03993 1.21065 0.91731 1.00078 0.94256 1.74722 1.10410 1.07752 1.18658 1.85473 1.21631 1.35729 1.55596 0.90382 0.81129 0.85893 0.85617 0.83342 0.84351 0.83769 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.71 10.87 55.50 0.60 -19.11 16 2 C 0.05 1.15 5.37 -17.48 -0.09 1.06 16 3 Si 0.94 17.95 29.56 -169.99 -5.03 12.92 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.34 -8.37 9.64 -14.84 -0.14 -8.51 16 8 H 0.12 2.86 6.38 -52.48 -0.33 2.52 16 9 N -0.22 -5.38 2.91 -58.14 -0.17 -5.55 16 10 C 0.02 0.36 10.01 -16.61 -0.17 0.20 16 11 C -0.24 -5.23 10.82 -39.88 -0.43 -5.66 16 12 C -0.15 -3.22 10.86 -38.98 -0.42 -3.64 16 13 C -0.05 -1.16 6.85 -81.83 -0.56 -1.72 16 14 C 0.31 7.08 8.09 -14.06 -0.11 6.97 16 15 N -0.51 -10.50 11.27 -10.31 -0.12 -10.61 16 16 C 0.20 3.87 7.78 -156.34 -1.22 2.66 16 17 C -0.02 -0.26 5.88 -104.87 -0.62 -0.87 16 18 C -0.04 -0.47 9.69 -39.28 -0.38 -0.85 16 19 C -0.19 -2.18 8.24 -39.48 -0.33 -2.51 16 20 C 0.11 1.21 6.49 -39.12 -0.25 0.96 16 21 O -0.31 -3.13 10.37 -19.22 -0.20 -3.33 16 22 C 0.60 5.43 3.42 101.05 0.35 5.77 16 23 F -0.16 -1.49 15.55 2.25 0.04 -1.46 16 24 F -0.13 -1.12 17.53 2.25 0.04 -1.08 16 25 F -0.16 -1.50 15.55 2.25 0.04 -1.47 16 26 C -0.12 -1.30 9.97 -39.48 -0.39 -1.70 16 27 C -0.05 -0.64 9.68 -39.29 -0.38 -1.02 16 28 N -0.40 -8.16 11.83 31.30 0.37 -7.79 16 29 O 0.07 1.60 9.59 16.09 0.15 1.76 16 30 H 0.29 6.21 8.31 -40.82 -0.34 5.87 16 31 H 0.17 4.04 6.39 -52.49 -0.34 3.71 16 32 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 34 H 0.15 1.94 7.86 -52.49 -0.41 1.53 16 35 H 0.14 1.36 5.08 -52.49 -0.27 1.10 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.15 1.73 7.86 -52.49 -0.41 1.32 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -26.13 345.19 -6.39 -32.52 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -2.16 Total: 6.86 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -5.15 Total: -8.88 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.69 Total: -43.06 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -0.05 Total: -1.57 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.11 Total: -4.00 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.13 -6.39 -32.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090610234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.359 kcal (2) G-P(sol) polarization free energy of solvation -26.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds