Wall clock time and date at job start Tue Mar 31 2020 07:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38361 * 119.85674 * 2 1 4 4 C 1.37950 * 120.15466 * 180.25762 * 3 2 1 5 5 C 1.39592 * 119.87133 * 359.45333 * 4 3 2 6 6 C 1.47845 * 120.14136 * 180.25457 * 5 4 3 7 7 O 1.21554 * 119.99748 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00279 * 179.97438 * 8 6 5 10 10 C 1.53037 * 109.45860 * 275.02997 * 9 8 6 11 11 C 1.53191 * 109.30910 * 178.59806 * 10 9 8 12 12 N 1.46930 * 108.76678 * 54.65627 * 11 10 9 13 13 C 1.36934 * 120.63244 * 126.40449 * 12 11 10 14 14 H 1.08001 * 119.99637 * 331.83102 * 13 12 11 15 15 C 1.38813 * 120.00221 * 151.83419 * 13 12 11 16 16 N 1.31621 * 119.99627 * 343.06501 * 15 13 12 17 17 Si 1.86796 * 120.00107 * 163.07149 * 15 13 12 18 18 H 1.48499 * 109.47217 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47454 * 119.99639 * 17 15 13 20 20 H 1.48503 * 109.46713 * 239.99757 * 17 15 13 21 21 C 1.46927 * 118.73779 * 306.38400 * 12 11 10 22 22 C 1.53039 * 109.45846 * 154.97575 * 9 8 6 23 23 C 1.39544 * 119.72254 * 0.26965 * 5 4 3 24 24 C 1.38076 * 119.84438 * 0.02562 * 23 5 4 25 25 Br 1.89097 * 119.93947 * 180.02562 * 24 23 5 26 26 H 1.08994 * 109.46757 * 270.29294 * 1 2 3 27 27 H 1.08997 * 109.47069 * 30.29470 * 1 2 3 28 28 H 1.09000 * 109.46973 * 150.29478 * 1 2 3 29 29 H 1.08004 * 119.92322 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.06335 * 179.72127 * 4 3 2 31 31 H 0.96998 * 119.99848 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.45628 * 35.00260 * 9 8 6 33 33 H 1.08993 * 109.49965 * 298.56514 * 10 9 8 34 34 H 1.09004 * 109.49809 * 58.66604 * 10 9 8 35 35 H 1.09004 * 109.60032 * 294.86882 * 11 10 9 36 36 H 1.09001 * 109.70410 * 174.50590 * 11 10 9 37 37 H 0.97004 * 119.99531 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.58838 * 293.82013 * 21 12 11 39 39 H 1.09000 * 109.70306 * 173.45978 * 21 12 11 40 40 H 1.09004 * 109.49507 * 301.33642 * 22 9 8 41 41 H 1.08999 * 109.49690 * 61.40202 * 22 9 8 42 42 H 1.07998 * 120.08133 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5753 1.2072 -0.0054 5 6 4.2769 0.0004 0.0007 6 6 5.7553 0.0011 0.0007 7 8 6.3625 1.0541 -0.0051 8 7 6.4299 -1.1656 0.0072 9 6 7.8950 -1.1648 0.0066 10 6 8.4041 -1.0463 -1.4317 11 6 9.9356 -1.0105 -1.4256 12 7 10.4331 -2.1903 -0.7049 13 6 11.3419 -3.0323 -1.2882 14 1 11.3696 -3.1362 -2.3628 15 6 12.2276 -3.7524 -0.4983 16 7 12.4323 -3.3972 0.7524 17 14 13.1289 -5.2255 -1.2103 18 1 12.7259 -5.4150 -2.6270 19 1 14.5935 -4.9915 -1.1390 20 1 12.7833 -6.4413 -0.4309 21 6 9.9373 -2.4493 0.6537 22 6 8.4057 -2.4686 0.6243 23 6 3.5769 -1.2068 0.0066 24 6 2.1962 -1.2005 0.0057 25 35 1.2449 -2.8348 0.0143 26 1 -0.3632 0.0053 1.0276 27 1 -0.3633 0.8873 -0.5184 28 1 -0.3633 -0.8926 -0.5092 29 1 1.6522 2.1332 0.0004 30 1 4.1115 2.1446 -0.0099 31 1 5.9454 -2.0059 0.0114 32 1 8.2578 -0.3194 0.5911 33 1 8.0623 -1.9043 -2.0105 34 1 8.0208 -0.1291 -1.8789 35 1 10.2782 -0.1050 -0.9247 36 1 10.3076 -1.0244 -2.4501 37 1 13.0515 -3.9002 1.3043 38 1 10.2799 -1.6612 1.3241 39 1 10.3081 -3.4129 1.0028 40 1 8.0235 -2.5638 1.6406 41 1 8.0634 -3.3131 0.0262 42 1 4.1138 -2.1439 0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093220633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:02 Heat of formation + Delta-G solvation = 5.106330 kcal Electronic energy + Delta-G solvation = -24232.876792 eV Core-core repulsion = 20645.154396 eV Total energy + Delta-G solvation = -3587.722396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.47997 -38.97656 -37.29045 -34.55001 -33.56336 -32.65283 -31.97445 -30.22009 -29.78946 -29.38525 -27.65088 -25.05477 -23.16567 -22.90664 -22.24210 -21.57613 -20.23026 -19.41978 -17.96307 -16.75085 -16.47620 -15.67505 -15.34187 -15.02899 -15.00964 -14.71162 -14.31510 -13.99434 -13.87452 -13.56129 -13.50509 -13.00721 -12.78583 -12.75955 -12.46025 -12.40562 -12.13316 -11.52196 -11.48348 -11.21716 -11.14904 -10.88401 -10.74548 -10.55279 -10.49511 -10.29606 -10.06003 -9.96111 -9.75173 -9.52572 -9.31972 -9.06206 -8.74905 -8.47427 -6.69804 -5.80777 -3.23012 0.42673 0.74652 1.21640 2.62495 3.21190 3.36420 3.44377 3.46607 3.52177 4.24651 4.26250 4.48614 4.62042 4.71583 4.84443 5.06008 5.15111 5.18006 5.28247 5.33698 5.41123 5.48658 5.55992 5.57861 5.67824 5.84633 5.92367 5.94487 6.05839 6.22550 6.29269 6.31499 6.50739 6.53607 6.56402 6.77957 6.86399 6.97785 7.29805 7.55195 7.65269 7.79133 8.26332 8.43392 9.19556 9.82666 10.39664 11.28225 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.002230 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.660679 B =12550.954459 C =13797.507878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.037 4.037 3 C -0.123 4.123 4 C -0.042 4.042 5 C -0.129 4.129 6 C 0.555 3.445 7 O -0.535 6.535 8 N -0.717 5.717 9 C 0.150 3.850 10 C -0.139 4.139 11 C 0.148 3.852 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.175 3.825 22 C -0.147 4.147 23 C -0.054 4.054 24 C -0.103 4.103 25 Br -0.043 7.043 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.395 0.605 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.310 4.657 0.046 28.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.039 4.039 3 C -0.142 4.142 4 C -0.061 4.061 5 C -0.133 4.133 6 C 0.341 3.659 7 O -0.413 6.413 8 N -0.367 5.367 9 C 0.048 3.952 10 C -0.179 4.179 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.381 4.381 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.048 3.952 22 C -0.187 4.187 23 C -0.075 4.075 24 C -0.182 4.182 25 Br 0.043 6.957 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.229 0.771 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.067 4.697 0.153 28.458 hybrid contribution 0.475 -0.886 -0.266 1.040 sum -27.592 3.810 -0.113 27.854 Atomic orbital electron populations 1.21066 0.89989 1.04033 1.03446 1.20014 0.96863 0.91556 0.95479 1.21048 0.93838 0.97448 1.01890 1.21449 0.93775 0.98211 0.92704 1.20094 0.93779 0.93697 1.05692 1.18127 0.86412 0.84451 0.76910 1.90783 1.69555 1.31045 1.49911 1.46309 1.08620 1.07752 1.73987 1.21113 0.76479 0.99987 0.97669 1.22381 0.99303 1.00745 0.95516 1.20875 0.90155 0.90276 0.96632 1.44102 1.48291 1.24913 1.14249 1.19231 1.09492 1.17702 0.91662 0.91590 1.25060 0.97184 1.00822 0.96643 1.70037 1.37528 1.39596 1.07603 0.86226 0.79252 0.82810 0.78516 1.20257 1.21712 1.21569 1.20737 0.86112 1.02031 0.86316 1.22553 1.01778 0.95337 0.99049 1.21286 0.92254 0.98287 0.95663 1.21616 0.94396 0.91744 1.10455 1.96718 1.74990 1.26359 1.97677 0.90036 0.90631 0.90261 0.84384 0.83824 0.77072 0.89784 0.92260 0.92673 0.96138 0.92493 0.93642 0.96058 0.88973 0.92664 0.92113 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.54 36.01 0.34 -0.39 16 2 C -0.04 -0.30 5.89 -104.51 -0.62 -0.92 16 3 C -0.12 -0.99 9.68 -39.64 -0.38 -1.38 16 4 C -0.04 -0.43 9.59 -39.18 -0.38 -0.81 16 5 C -0.13 -1.51 5.87 -104.97 -0.62 -2.13 16 6 C 0.55 8.22 7.74 -12.33 -0.10 8.12 16 7 O -0.53 -9.78 16.01 5.32 0.09 -9.69 16 8 N -0.72 -10.16 5.03 -54.71 -0.28 -10.43 16 9 C 0.15 2.61 2.42 -67.89 -0.16 2.44 16 10 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 11 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 12 N -0.59 -14.74 2.99 -172.31 -0.52 -15.25 16 13 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 14 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 15 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 16 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 17 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 22 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 23 C -0.05 -0.55 9.28 -39.15 -0.36 -0.91 16 24 C -0.10 -0.95 6.21 -39.57 -0.25 -1.20 16 25 Br -0.04 -0.36 31.76 -68.01 -2.16 -2.52 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.08 0.47 6.63 -51.93 -0.34 0.12 16 29 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 30 H 0.14 1.46 7.65 -52.49 -0.40 1.06 16 31 H 0.39 4.56 6.64 -40.82 -0.27 4.29 16 32 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.14 1.20 6.40 -52.49 -0.34 0.87 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -31.10 359.85 -10.76 -41.86 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.82 Total: 2.02 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.09 Total: -2.51 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.17 Total: -51.05 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.16 Total: -2.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.10 -10.76 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093220633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.965 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds