Wall clock time and date at job start Tue Mar 31 2020 07:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38361 * 119.85674 * 2 1 4 4 C 1.37950 * 120.15466 * 180.25762 * 3 2 1 5 5 C 1.39592 * 119.87133 * 359.45333 * 4 3 2 6 6 C 1.47845 * 120.14136 * 180.25457 * 5 4 3 7 7 O 1.21554 * 119.99748 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00279 * 179.97438 * 8 6 5 10 10 C 1.53037 * 109.45860 * 275.02997 * 9 8 6 11 11 C 1.53191 * 109.30910 * 178.59806 * 10 9 8 12 12 N 1.46930 * 108.76678 * 54.65627 * 11 10 9 13 13 C 1.36934 * 120.63244 * 126.40449 * 12 11 10 14 14 H 1.08001 * 119.99637 * 331.83102 * 13 12 11 15 15 C 1.38813 * 120.00221 * 151.83419 * 13 12 11 16 16 N 1.31621 * 119.99627 * 343.06501 * 15 13 12 17 17 Si 1.86796 * 120.00107 * 163.07149 * 15 13 12 18 18 H 1.48499 * 109.47217 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47454 * 119.99639 * 17 15 13 20 20 H 1.48503 * 109.46713 * 239.99757 * 17 15 13 21 21 C 1.46927 * 118.73779 * 306.38400 * 12 11 10 22 22 C 1.53039 * 109.45846 * 154.97575 * 9 8 6 23 23 C 1.39544 * 119.72254 * 0.26965 * 5 4 3 24 24 C 1.38076 * 119.84438 * 0.02562 * 23 5 4 25 25 Br 1.89097 * 119.93947 * 180.02562 * 24 23 5 26 26 H 1.08994 * 109.46757 * 270.29294 * 1 2 3 27 27 H 1.08997 * 109.47069 * 30.29470 * 1 2 3 28 28 H 1.09000 * 109.46973 * 150.29478 * 1 2 3 29 29 H 1.08004 * 119.92322 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.06335 * 179.72127 * 4 3 2 31 31 H 0.96998 * 119.99848 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.45628 * 35.00260 * 9 8 6 33 33 H 1.08993 * 109.49965 * 298.56514 * 10 9 8 34 34 H 1.09004 * 109.49809 * 58.66604 * 10 9 8 35 35 H 1.09004 * 109.60032 * 294.86882 * 11 10 9 36 36 H 1.09001 * 109.70410 * 174.50590 * 11 10 9 37 37 H 0.97004 * 119.99531 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.58838 * 293.82013 * 21 12 11 39 39 H 1.09000 * 109.70306 * 173.45978 * 21 12 11 40 40 H 1.09004 * 109.49507 * 301.33642 * 22 9 8 41 41 H 1.08999 * 109.49690 * 61.40202 * 22 9 8 42 42 H 1.07998 * 120.08133 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5753 1.2072 -0.0054 5 6 4.2769 0.0004 0.0007 6 6 5.7553 0.0011 0.0007 7 8 6.3625 1.0541 -0.0051 8 7 6.4299 -1.1656 0.0072 9 6 7.8950 -1.1648 0.0066 10 6 8.4041 -1.0463 -1.4317 11 6 9.9356 -1.0105 -1.4256 12 7 10.4331 -2.1903 -0.7049 13 6 11.3419 -3.0323 -1.2882 14 1 11.3696 -3.1362 -2.3628 15 6 12.2276 -3.7524 -0.4983 16 7 12.4323 -3.3972 0.7524 17 14 13.1289 -5.2255 -1.2103 18 1 12.7259 -5.4150 -2.6270 19 1 14.5935 -4.9915 -1.1390 20 1 12.7833 -6.4413 -0.4309 21 6 9.9373 -2.4493 0.6537 22 6 8.4057 -2.4686 0.6243 23 6 3.5769 -1.2068 0.0066 24 6 2.1962 -1.2005 0.0057 25 35 1.2449 -2.8348 0.0143 26 1 -0.3632 0.0053 1.0276 27 1 -0.3633 0.8873 -0.5184 28 1 -0.3633 -0.8926 -0.5092 29 1 1.6522 2.1332 0.0004 30 1 4.1115 2.1446 -0.0099 31 1 5.9454 -2.0059 0.0114 32 1 8.2578 -0.3194 0.5911 33 1 8.0623 -1.9043 -2.0105 34 1 8.0208 -0.1291 -1.8789 35 1 10.2782 -0.1050 -0.9247 36 1 10.3076 -1.0244 -2.4501 37 1 13.0515 -3.9002 1.3043 38 1 10.2799 -1.6612 1.3241 39 1 10.3081 -3.4129 1.0028 40 1 8.0235 -2.5638 1.6406 41 1 8.0634 -3.3131 0.0262 42 1 4.1138 -2.1439 0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093220633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:01 Heat of formation + Delta-G solvation = -12.327536 kcal Electronic energy + Delta-G solvation = -24233.632781 eV Core-core repulsion = 20645.154396 eV Total energy + Delta-G solvation = -3588.478385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49526 -40.00667 -38.83629 -36.10358 -34.46784 -33.83670 -33.15165 -31.82219 -31.22962 -30.38343 -28.47354 -26.82928 -24.36250 -23.88504 -23.75041 -22.85617 -21.38150 -20.96262 -19.22592 -18.47705 -17.57084 -16.86180 -16.40663 -16.30213 -16.09986 -15.98337 -15.49081 -15.36257 -14.98662 -14.87617 -14.72508 -14.43070 -14.28418 -14.12326 -13.26376 -13.23199 -13.13023 -13.03502 -12.83122 -12.63992 -12.53776 -12.25245 -12.19037 -12.01514 -11.91524 -11.88536 -11.59687 -11.41896 -11.22705 -10.96540 -10.57761 -10.17774 -9.96288 -9.71993 -8.72201 -7.88881 -5.34612 -0.35884 0.04077 0.53583 1.47181 1.49210 1.59922 1.68183 2.05125 2.51257 2.63606 3.27103 3.46088 3.61966 3.64749 3.83856 3.90261 3.99571 4.02397 4.16713 4.29428 4.36964 4.43558 4.58734 4.62547 4.71639 4.76642 4.78320 4.82792 4.92348 4.98166 5.02609 5.12486 5.17913 5.22910 5.27524 5.29693 5.44658 5.46775 5.63662 5.64251 5.69742 6.37947 6.47590 7.12542 7.13469 7.82659 8.35698 9.18496 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.002230 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.660679 B =12550.954459 C =13797.507878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.031 4.031 3 C -0.116 4.116 4 C -0.050 4.050 5 C -0.148 4.148 6 C 0.556 3.444 7 O -0.576 6.576 8 N -0.707 5.707 9 C 0.162 3.838 10 C -0.124 4.124 11 C 0.145 3.855 12 N -0.609 5.609 13 C -0.262 4.262 14 H 0.068 0.932 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.294 1.294 20 H -0.288 1.288 21 C 0.179 3.821 22 C -0.130 4.130 23 C -0.054 4.054 24 C -0.114 4.114 25 Br -0.035 7.035 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.169 0.831 30 H 0.139 0.861 31 H 0.410 0.590 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.008 0.992 36 H 0.058 0.942 37 H 0.251 0.749 38 H -0.005 1.005 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.257 4.128 -0.655 31.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.033 4.033 3 C -0.135 4.135 4 C -0.070 4.070 5 C -0.152 4.152 6 C 0.344 3.656 7 O -0.457 6.457 8 N -0.357 5.357 9 C 0.057 3.943 10 C -0.164 4.164 11 C 0.019 3.981 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.221 1.221 20 H -0.214 1.214 21 C 0.053 3.947 22 C -0.169 4.169 23 C -0.074 4.074 24 C -0.194 4.194 25 Br 0.051 6.949 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.186 0.814 30 H 0.156 0.844 31 H 0.248 0.752 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.013 0.987 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -31.062 4.154 -0.563 31.344 hybrid contribution 1.310 -0.654 -0.045 1.464 sum -29.753 3.500 -0.608 29.964 Atomic orbital electron populations 1.21156 0.87998 1.04993 1.04413 1.20401 0.98317 0.91102 0.93472 1.21339 0.92846 0.98783 1.00522 1.21556 0.94905 0.97553 0.92950 1.19828 0.91651 0.95071 1.08647 1.18584 0.87759 0.83644 0.75582 1.90760 1.70700 1.32401 1.51858 1.46018 1.07129 1.08690 1.73886 1.20716 0.78448 0.98541 0.96564 1.22177 0.96628 1.01301 0.96312 1.20962 0.92385 0.88660 0.96115 1.44357 1.48401 1.25759 1.14740 1.19545 1.09758 1.17991 0.91943 0.91479 1.25823 0.98304 1.03360 0.97050 1.70191 1.38402 1.40715 1.08859 0.85189 0.77524 0.79348 0.78255 1.19084 1.22102 1.21406 1.20555 0.89471 0.99436 0.85259 1.22276 0.97765 0.96099 1.00781 1.21343 0.92803 0.97970 0.95300 1.21781 0.94254 0.92683 1.10644 1.96729 1.74615 1.25877 1.97660 0.88895 0.88691 0.90341 0.81365 0.84351 0.75238 0.92061 0.91460 0.92129 0.97375 0.92298 0.93998 0.98665 0.91768 0.90465 0.91047 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.54 71.24 0.68 -0.35 16 2 C -0.03 -0.41 5.89 -19.79 -0.12 -0.53 16 3 C -0.12 -1.55 9.68 22.23 0.22 -1.34 16 4 C -0.05 -0.97 9.59 22.53 0.22 -0.75 16 5 C -0.15 -3.31 5.87 -20.09 -0.12 -3.43 16 6 C 0.56 16.23 7.74 86.79 0.67 16.90 16 7 O -0.58 -21.35 16.01 -3.88 -0.06 -21.41 16 8 N -0.71 -19.28 5.03 -445.28 -2.24 -21.52 16 9 C 0.16 5.55 2.42 45.02 0.11 5.66 16 10 C -0.12 -4.47 5.65 30.67 0.17 -4.30 16 11 C 0.14 6.31 6.52 86.36 0.56 6.87 16 12 N -0.61 -30.84 2.99 -699.08 -2.09 -32.93 16 13 C -0.26 -14.42 9.58 84.03 0.81 -13.61 16 14 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 15 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 16 N -0.94 -55.23 11.19 21.65 0.24 -54.99 16 17 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 C 0.18 8.57 5.30 86.36 0.46 9.03 16 22 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 23 C -0.05 -0.99 9.28 22.55 0.21 -0.78 16 24 C -0.11 -1.86 6.21 22.28 0.14 -1.72 16 25 Br -0.03 -0.50 31.76 -20.37 -0.65 -1.15 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 28 H 0.08 0.68 6.63 -2.39 -0.02 0.66 16 29 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.14 2.76 7.65 -2.91 -0.02 2.74 16 31 H 0.41 8.70 6.64 -92.71 -0.62 8.08 16 32 H 0.06 2.42 7.58 -2.39 -0.02 2.41 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 37 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 40 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.15 2.27 6.40 -2.91 -0.02 2.25 16 Total: -1.00 -68.47 359.85 2.25 -66.22 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.42 Total: 14.35 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.59 Total: 4.83 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.09 Total: -109.44 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.65 Total: -1.15 kcal Total: -68.47 2.25 -66.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093220633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.890 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds