Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21629 * 120.00072 * 359.97438 * 14 13 3 16 16 C 1.47184 * 119.99617 * 179.97438 * 14 13 3 17 17 C 1.35993 * 123.46338 * 359.69764 * 16 14 13 18 18 S 1.70447 * 110.83369 * 179.91620 * 17 16 14 19 19 C 1.75503 * 92.44839 * 0.30433 * 18 17 16 20 20 I 2.09498 * 124.71567 * 179.80983 * 19 18 17 21 21 C 1.32834 * 110.56712 * 359.82684 * 19 18 17 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 29 29 H 1.08004 * 124.58034 * 0.04221 * 17 16 14 30 30 H 1.08002 * 123.46183 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3418 2.6319 -0.4318 16 6 0.0460 3.3228 -2.6246 17 6 0.8600 3.4053 -3.7109 18 16 0.0869 4.2304 -4.9864 19 6 -1.3692 4.4838 -4.0400 20 53 -3.0777 5.4848 -4.7243 21 6 -1.2373 3.9531 -2.8295 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 2.2720 2.1231 -1.9978 29 1 1.8602 3.0008 -3.7595 30 1 -2.0101 3.9895 -2.0758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093973253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -17.681543 kcal Electronic energy + Delta-G solvation = -16270.534875 eV Core-core repulsion = 13436.744434 eV Total energy + Delta-G solvation = -2833.790441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 364.969 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93860 -38.26569 -36.81986 -34.40818 -33.30142 -32.30401 -29.28483 -28.40664 -26.04689 -24.78681 -22.44347 -21.39503 -20.41154 -19.12631 -18.25609 -17.62354 -17.03948 -16.31243 -16.09539 -15.33974 -14.65827 -14.56603 -14.34563 -14.08078 -13.70904 -13.43623 -13.19704 -13.11689 -12.86296 -12.69323 -12.34182 -12.14731 -12.06483 -11.60629 -11.51954 -11.09968 -11.06086 -10.78236 -10.52708 -10.00302 -9.73806 -9.40574 -8.16007 -6.33583 -0.41765 -0.32774 0.49989 0.71567 0.78891 1.45759 1.45996 1.56502 2.34992 2.43864 2.63679 3.13842 3.83081 4.08288 4.20630 4.48603 4.54032 4.56587 4.72381 4.76102 4.99714 5.07954 5.26339 5.42932 5.54560 5.60169 5.78721 5.91443 6.15999 6.73613 6.94540 7.32570 7.52699 8.89468 Molecular weight = 364.97amu Principal moments of inertia in cm(-1) A = 0.031642 B = 0.002612 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.700574 B =10718.582472 C =11247.616758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.696 5.696 14 C 0.560 3.440 15 O -0.585 6.585 16 C -0.174 4.174 17 C -0.191 4.191 18 S 0.302 5.698 19 C -0.254 4.254 20 I 0.042 6.958 21 C -0.047 4.047 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.025 0.975 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.198 0.802 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 10.905 -21.186 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.345 5.345 14 C 0.346 3.654 15 O -0.468 6.468 16 C -0.193 4.193 17 C -0.331 4.331 18 S 0.568 5.432 19 C -0.509 4.509 20 I 0.186 6.814 21 C -0.080 4.080 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.215 0.785 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.864 11.841 -22.293 27.891 hybrid contribution 1.614 -1.192 2.464 3.177 sum -10.250 10.649 -19.829 24.731 Atomic orbital electron populations 1.21687 0.97120 0.99152 1.00214 1.21789 0.93629 0.99102 1.01438 1.18409 0.93791 0.89171 0.81050 0.98282 1.21566 0.91240 1.39050 1.06838 0.90865 1.25769 1.03311 0.94325 0.95012 1.70048 1.37105 1.38265 1.09841 0.85374 0.79092 0.77365 0.78669 1.20527 1.21041 1.18284 1.46113 1.14973 1.55644 1.17753 1.18003 0.82096 0.78347 0.86966 1.90741 1.52574 1.61691 1.41759 1.20203 0.96086 1.07649 0.95396 1.26242 1.05628 1.03306 0.97953 1.82678 1.00788 1.48513 1.11244 1.28772 1.05231 1.14795 1.02100 1.96757 1.25176 1.73061 1.86426 1.21022 0.96148 0.94902 0.95923 0.93535 0.93943 0.95535 0.90839 0.93908 0.92584 0.76242 0.78477 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.06 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.28 14.21 2.24 44.25 0.10 14.31 16 4 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 5 C -0.55 -28.54 8.73 25.60 0.22 -28.31 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -51.89 11.29 21.45 0.24 -51.65 16 9 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 13 N -0.70 -28.55 4.99 -449.59 -2.24 -30.80 16 14 C 0.56 22.72 6.36 86.59 0.55 23.27 16 15 O -0.59 -28.57 13.93 -4.12 -0.06 -28.62 16 16 C -0.17 -5.30 5.98 -19.87 -0.12 -5.42 16 17 C -0.19 -4.21 10.38 67.30 0.70 -3.51 16 18 S 0.30 5.17 23.02 -56.49 -1.30 3.87 16 19 C -0.25 -5.57 6.85 66.64 0.46 -5.11 16 20 I 0.04 0.74 40.64 -18.82 -0.76 -0.02 16 21 C -0.05 -1.31 10.00 22.67 0.23 -1.09 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 24 H 0.03 1.30 7.84 -2.38 -0.02 1.28 16 25 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.40 13.59 7.04 -92.71 -0.65 12.94 16 29 H 0.20 3.41 7.01 -2.91 -0.02 3.39 16 30 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -64.62 295.97 1.79 -62.83 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.53 Total: 16.37 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.36 Total: -15.39 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.00 Total: -82.45 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.62 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.30 Total: 3.87 kcal Atomic # 53 Polarization: 0.74 SS G_CDS: -0.76 Total: -0.02 kcal Total: -64.62 1.79 -62.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093973253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.144 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds