Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47584 * 2 1 4 4 H 1.09002 * 109.46828 * 305.00231 * 3 2 1 5 5 C 1.50691 * 109.47285 * 185.00233 * 3 2 1 6 6 H 1.08007 * 120.00024 * 240.00102 * 5 3 2 7 7 C 1.37878 * 120.00367 * 59.99576 * 5 3 2 8 8 N 1.31516 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00297 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47105 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46857 * 120.00451 * 9 7 5 12 12 H 1.48497 * 109.47398 * 240.00602 * 9 7 5 13 13 N 1.46500 * 109.46961 * 64.99686 * 3 2 1 14 14 C 1.34773 * 120.00431 * 275.00501 * 13 3 2 15 15 O 1.21643 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.47185 * 120.00084 * 179.72617 * 14 13 3 17 17 C 1.35989 * 123.45999 * 359.97438 * 16 14 13 18 18 S 1.70444 * 110.83236 * 179.91579 * 17 16 14 19 19 C 1.75495 * 92.44840 * 0.30334 * 18 17 16 20 20 I 2.09508 * 124.71609 * 179.81117 * 19 18 17 21 21 C 1.32838 * 110.57110 * 359.82557 * 19 18 17 22 22 H 1.09001 * 109.47525 * 299.99876 * 1 2 3 23 23 H 1.09006 * 109.47239 * 59.99796 * 1 2 3 24 24 H 1.09001 * 109.48014 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46881 * 239.99816 * 2 1 3 26 26 H 1.08998 * 109.47044 * 120.00435 * 2 1 3 27 27 H 0.97000 * 120.00330 * 180.02562 * 8 7 5 28 28 H 0.97000 * 119.99456 * 95.00064 * 13 3 2 29 29 H 1.08005 * 124.58663 * 0.02562 * 17 16 14 30 30 H 1.07997 * 123.46425 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8782 -1.2280 8 7 3.4061 0.3372 -2.1733 9 14 6.0049 0.8810 -1.3819 10 1 6.5988 1.5460 -0.1943 11 1 6.4969 -0.5178 -1.4631 12 1 6.3990 1.6164 -2.6102 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3415 2.6326 0.4314 16 6 0.0436 3.3171 2.6267 17 6 0.8529 3.3887 3.7172 18 16 0.0799 4.2141 4.9926 19 6 -1.3765 4.4667 4.0466 20 53 -3.0893 5.4577 4.7347 21 6 -1.2420 3.9420 2.8336 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 3.8292 -0.0613 -2.9499 28 1 2.2720 2.1230 1.9977 29 1 1.8511 2.9795 3.7678 30 1 -2.0147 3.9786 2.0800 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093973254.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -17.747358 kcal Electronic energy + Delta-G solvation = -16271.184784 eV Core-core repulsion = 13437.391489 eV Total energy + Delta-G solvation = -2833.793295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 364.969 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93778 -38.26578 -36.81948 -34.40864 -33.30125 -32.30484 -29.28629 -28.40723 -26.04774 -24.78803 -22.44407 -21.39536 -20.41182 -19.12679 -18.25661 -17.62623 -17.04130 -16.31048 -16.09404 -15.33652 -14.66269 -14.57188 -14.34119 -14.08163 -13.70975 -13.43693 -13.20047 -13.11980 -12.85432 -12.70839 -12.33854 -12.13651 -12.06359 -11.61157 -11.52097 -11.09814 -11.04737 -10.78348 -10.53536 -10.00291 -9.73809 -9.40559 -8.16207 -6.33677 -0.41734 -0.32786 0.50018 0.71577 0.78915 1.44621 1.46030 1.57406 2.35035 2.43715 2.63632 3.13717 3.83085 4.08287 4.20661 4.48517 4.54047 4.56507 4.72393 4.76080 4.99730 5.07919 5.26329 5.42873 5.54540 5.60321 5.78624 5.91371 6.15912 6.73784 6.94502 7.32555 7.52674 8.89469 Molecular weight = 364.97amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.002611 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.554572 B =10720.515383 C =11249.221289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.696 5.696 14 C 0.560 3.440 15 O -0.585 6.585 16 C -0.174 4.174 17 C -0.191 4.191 18 S 0.303 5.697 19 C -0.254 4.254 20 I 0.042 6.958 21 C -0.047 4.047 22 H 0.042 0.958 23 H 0.025 0.975 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.198 0.802 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.674 10.844 21.222 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.345 5.345 14 C 0.346 3.654 15 O -0.468 6.468 16 C -0.193 4.193 17 C -0.331 4.331 18 S 0.568 5.432 19 C -0.509 4.509 20 I 0.186 6.814 21 C -0.080 4.080 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.215 0.785 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.906 11.780 22.332 27.915 hybrid contribution 1.617 -1.201 -2.472 3.188 sum -10.289 10.580 19.860 24.743 Atomic orbital electron populations 1.21686 0.97120 0.99153 1.00213 1.21788 0.93631 0.99099 1.01438 1.18411 0.93806 0.89170 0.81062 0.98267 1.21591 0.91232 1.38957 1.06794 0.90870 1.25767 1.03299 0.94364 0.95006 1.70055 1.37018 1.38325 1.09875 0.85322 0.79119 0.77812 0.78222 1.18314 1.20474 1.21148 1.46109 1.14997 1.55604 1.17760 1.18005 0.82099 0.78319 0.86992 1.90745 1.52614 1.61628 1.41795 1.20201 0.96123 1.07745 0.95260 1.26240 1.05698 1.03283 0.97912 1.82676 1.00804 1.48417 1.11313 1.28774 1.05135 1.14913 1.02079 1.96757 1.24798 1.73587 1.86284 1.21022 0.96091 0.94994 0.95888 0.93942 0.95537 0.93536 0.90846 0.93902 0.92592 0.76242 0.78477 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 14.19 2.24 44.24 0.10 14.29 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -28.47 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.87 11.29 21.45 0.24 -51.62 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.70 -28.54 4.99 -449.61 -2.24 -30.78 16 14 C 0.56 22.71 6.36 86.59 0.55 23.26 16 15 O -0.59 -28.57 13.93 -4.17 -0.06 -28.63 16 16 C -0.17 -5.30 5.98 -19.87 -0.12 -5.42 16 17 C -0.19 -4.21 10.38 67.30 0.70 -3.51 16 18 S 0.30 5.17 23.02 -56.49 -1.30 3.87 16 19 C -0.25 -5.57 6.85 66.64 0.46 -5.11 16 20 I 0.04 0.74 40.64 -18.82 -0.76 -0.02 16 21 C -0.05 -1.31 10.00 22.67 0.23 -1.09 16 22 H 0.04 1.88 5.65 -2.39 -0.01 1.87 16 23 H 0.03 1.30 7.84 -2.38 -0.02 1.28 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 4.03 5.95 -2.38 -0.01 4.02 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.40 13.59 7.04 -92.71 -0.65 12.94 16 29 H 0.20 3.40 7.01 -2.91 -0.02 3.38 16 30 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -64.64 295.97 1.79 -62.84 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.53 Total: 16.25 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 3.36 Total: -15.35 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.00 Total: -82.41 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.63 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.30 Total: 3.87 kcal Atomic # 53 Polarization: 0.74 SS G_CDS: -0.76 Total: -0.02 kcal Total: -64.64 1.79 -62.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093973254.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.096 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds