Wall clock time and date at job start Tue Mar 31 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45207 * 109.47106 * 2 1 4 4 C 1.34733 * 116.99808 * 179.97438 * 3 2 1 5 5 O 1.21488 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.47577 * 119.99671 * 179.97438 * 4 3 2 7 7 N 1.31931 * 125.97231 * 359.97438 * 6 4 3 8 8 N 1.40050 * 108.28355 * 180.02562 * 7 6 4 9 9 C 1.46491 * 125.95156 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46957 * 90.02544 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.35982 * 108.10261 * 0.24513 * 8 7 6 19 19 N 1.39290 * 126.10497 * 179.72764 * 18 8 7 20 20 C 1.35845 * 107.78623 * 359.60495 * 18 8 7 21 21 I 2.09502 * 126.11474 * 180.18344 * 20 18 8 22 22 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46804 * 299.99847 * 1 2 3 24 24 H 1.09000 * 109.47356 * 60.00047 * 1 2 3 25 25 H 1.09000 * 109.46938 * 239.99633 * 2 1 3 26 26 H 1.09001 * 109.47228 * 119.99418 * 2 1 3 27 27 H 1.09004 * 109.47166 * 330.02810 * 9 8 7 28 28 H 1.08994 * 109.47507 * 210.02516 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 30 30 H 0.96999 * 120.00087 * 359.97438 * 19 18 8 31 31 H 0.96998 * 119.99871 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 0.0005 5 8 4.0898 0.5820 0.0005 6 6 3.9137 2.9092 0.0000 7 7 3.2233 4.0334 -0.0015 8 7 4.1265 5.1038 -0.0021 9 6 3.7748 6.5259 -0.0042 10 6 3.6536 7.0155 1.4159 11 1 3.8221 6.3354 2.2378 12 6 3.3337 8.3332 1.6659 13 7 3.1289 9.1614 0.6650 14 14 3.1910 8.9418 3.4262 15 1 4.5136 9.4344 3.8883 16 1 2.2016 10.0474 3.4890 17 1 2.7446 7.8277 4.3006 18 6 5.3868 4.5932 -0.0065 19 7 6.5701 5.3280 -0.0138 20 6 5.2857 3.2385 0.0004 21 53 6.8815 1.8812 0.0035 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.8238 6.6642 -0.5186 28 1 4.5517 7.0915 -0.5185 29 1 2.9034 10.0883 0.8409 30 1 6.5389 6.2975 -0.0166 31 1 7.4252 4.8702 -0.0161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095094683.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:18 Heat of formation + Delta-G solvation = 2.340227 kcal Electronic energy + Delta-G solvation = -18360.089396 eV Core-core repulsion = 15116.707044 eV Total energy + Delta-G solvation = -3243.382352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 365.002 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96457 -39.75497 -36.36512 -34.44380 -33.88106 -32.09559 -31.61813 -29.76395 -27.86814 -26.37955 -24.79740 -23.06835 -21.93242 -20.13890 -19.84094 -17.64803 -16.92282 -16.70595 -16.38361 -15.87567 -15.40876 -14.69514 -14.45617 -13.94642 -13.77983 -13.29183 -12.78215 -12.54405 -12.41465 -11.88181 -11.66150 -11.53911 -11.22702 -10.93604 -10.76558 -10.65741 -10.42688 -10.41381 -10.32113 -10.15690 -9.70900 -9.14358 -8.78011 -8.30675 -7.47249 -6.40458 -4.48966 1.61529 1.70836 2.62121 2.66748 3.10831 3.13459 3.21207 3.27639 3.49362 4.13225 4.22332 4.83019 4.94451 4.95065 5.00574 5.26458 5.35623 5.61455 5.73172 5.77500 5.97435 6.30331 6.53528 6.71086 6.86866 7.00912 7.52841 7.56214 7.69218 7.86206 7.98569 8.28090 8.57515 9.18988 10.67236 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004780 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.224002 B = 5856.776771 C = 7920.100296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.342 6.342 4 C 0.552 3.448 5 O -0.485 6.485 6 C 0.065 3.935 7 N -0.219 5.219 8 N -0.336 5.336 9 C 0.257 3.743 10 C -0.543 4.543 11 H 0.067 0.933 12 C 0.069 3.931 13 N -0.888 5.888 14 Si 0.908 3.092 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.406 3.594 19 N -0.845 5.845 20 C -0.289 4.289 21 I -0.013 7.013 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.270 0.730 30 H 0.412 0.588 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -14.287 -2.987 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.258 6.258 4 C 0.393 3.607 5 O -0.369 6.369 6 C -0.103 4.103 7 N -0.048 5.048 8 N -0.127 5.127 9 C 0.140 3.860 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.735 3.265 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.173 3.827 19 N -0.394 5.394 20 C -0.446 4.446 21 I 0.131 6.869 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.242 0.758 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.757 -14.725 -3.042 16.100 hybrid contribution -0.020 1.170 0.951 1.508 sum 5.737 -13.555 -2.090 14.867 Atomic orbital electron populations 1.21796 0.92707 1.02605 1.03831 1.23023 0.95348 0.80254 1.02505 1.86681 1.23379 1.31851 1.83889 1.19668 0.80646 0.87456 0.72924 1.90884 1.60089 1.40701 1.45238 1.20123 0.90971 0.91137 1.08023 1.77892 1.14430 0.92039 1.20394 1.49651 1.00325 1.08198 1.54563 1.19831 0.98923 0.67832 0.99424 1.21291 1.50350 0.95486 0.91065 0.91528 1.24918 0.94184 0.96132 0.98295 1.69910 1.46056 1.05502 1.31104 0.86321 0.78159 0.78596 0.83463 1.20281 1.20762 1.19565 1.17434 0.82699 0.88540 0.94050 1.41625 1.03214 1.09336 1.85270 1.22782 0.94453 0.92350 1.35015 1.96244 1.34000 1.57349 1.99261 0.90432 0.91342 0.91387 0.91217 0.91201 0.92053 0.92944 0.92049 0.75757 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.77 6.20 37.16 0.23 1.00 16 3 O -0.34 -5.75 10.23 -40.58 -0.41 -6.17 16 4 C 0.55 10.17 7.97 34.54 0.28 10.45 16 5 O -0.48 -8.84 14.78 -19.26 -0.28 -9.12 16 6 C 0.07 1.31 7.11 -82.94 -0.59 0.72 16 7 N -0.22 -4.85 12.61 33.32 0.42 -4.43 16 8 N -0.34 -7.32 3.62 -61.51 -0.22 -7.54 16 9 C 0.26 6.04 6.01 -5.20 -0.03 6.01 16 10 C -0.54 -13.97 9.39 -34.44 -0.32 -14.30 16 11 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -23.57 13.29 55.43 0.74 -22.84 16 14 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.41 7.70 7.96 -152.78 -1.22 6.49 16 19 N -0.84 -12.88 9.11 31.20 0.28 -12.60 16 20 C -0.29 -5.41 6.55 -39.36 -0.26 -5.67 16 21 I -0.01 -0.20 38.09 -73.02 -2.78 -2.98 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.05 1.19 7.48 -51.93 -0.39 0.80 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.41 6.09 8.08 -40.82 -0.33 5.76 16 31 H 0.41 5.27 8.33 -40.82 -0.34 4.93 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -28.51 308.36 -7.40 -35.91 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.14 Total: 4.64 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.63 Total: 5.30 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 1.22 Total: -47.40 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.70 Total: -15.29 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 53 Polarization: -0.20 SS G_CDS: -2.78 Total: -2.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.51 -7.40 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095094683.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.251 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds