Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45207 * 109.47106 * 2 1 4 4 C 1.34733 * 116.99808 * 179.97438 * 3 2 1 5 5 O 1.21488 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.47577 * 119.99671 * 179.97438 * 4 3 2 7 7 N 1.31931 * 125.97231 * 359.97438 * 6 4 3 8 8 N 1.40050 * 108.28355 * 180.02562 * 7 6 4 9 9 C 1.46491 * 125.95156 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46957 * 90.02544 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.35982 * 108.10261 * 0.24513 * 8 7 6 19 19 N 1.39290 * 126.10497 * 179.72764 * 18 8 7 20 20 C 1.35845 * 107.78623 * 359.60495 * 18 8 7 21 21 I 2.09502 * 126.11474 * 180.18344 * 20 18 8 22 22 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46804 * 299.99847 * 1 2 3 24 24 H 1.09000 * 109.47356 * 60.00047 * 1 2 3 25 25 H 1.09000 * 109.46938 * 239.99633 * 2 1 3 26 26 H 1.09001 * 109.47228 * 119.99418 * 2 1 3 27 27 H 1.09004 * 109.47166 * 330.02810 * 9 8 7 28 28 H 1.08994 * 109.47507 * 210.02516 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 30 30 H 0.96999 * 120.00087 * 359.97438 * 19 18 8 31 31 H 0.96998 * 119.99871 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 0.0005 5 8 4.0898 0.5820 0.0005 6 6 3.9137 2.9092 0.0000 7 7 3.2233 4.0334 -0.0015 8 7 4.1265 5.1038 -0.0021 9 6 3.7748 6.5259 -0.0042 10 6 3.6536 7.0155 1.4159 11 1 3.8221 6.3354 2.2378 12 6 3.3337 8.3332 1.6659 13 7 3.1289 9.1614 0.6650 14 14 3.1910 8.9418 3.4262 15 1 4.5136 9.4344 3.8883 16 1 2.2016 10.0474 3.4890 17 1 2.7446 7.8277 4.3006 18 6 5.3868 4.5932 -0.0065 19 7 6.5701 5.3280 -0.0138 20 6 5.2857 3.2385 0.0004 21 53 6.8815 1.8812 0.0035 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.8238 6.6642 -0.5186 28 1 4.5517 7.0915 -0.5185 29 1 2.9034 10.0883 0.8409 30 1 6.5389 6.2975 -0.0166 31 1 7.4252 4.8702 -0.0161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095094683.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -14.632848 kcal Electronic energy + Delta-G solvation = -18360.825404 eV Core-core repulsion = 15116.707044 eV Total energy + Delta-G solvation = -3244.118360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 365.002 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.47402 -41.12535 -37.68358 -35.97912 -35.60826 -33.80558 -32.60271 -31.24888 -29.55067 -27.90424 -26.41244 -24.43589 -23.27942 -21.60793 -21.32364 -19.07292 -18.83116 -18.13149 -17.64053 -17.25150 -17.02934 -16.32212 -16.01150 -15.47042 -15.01051 -14.51393 -14.32837 -14.13133 -13.57822 -13.39069 -13.02859 -12.92329 -12.69098 -12.49607 -12.32832 -12.21943 -12.01133 -11.92830 -11.88830 -11.50187 -11.19489 -10.74922 -10.49317 -9.92427 -8.90692 -8.36860 -6.52521 0.11162 0.25376 1.12929 1.26629 1.37938 1.41097 1.51183 1.69364 2.01361 2.32947 2.79509 2.96107 3.40889 3.99396 4.05309 4.10479 4.12634 4.37532 4.71517 4.79035 4.85725 4.94643 5.08907 5.14555 5.37012 5.42623 5.60090 5.74995 6.15937 6.30709 6.59217 6.65020 6.88029 7.19048 8.70421 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004780 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.224002 B = 5856.776771 C = 7920.100296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.552 3.448 5 O -0.485 6.485 6 C 0.062 3.938 7 N -0.258 5.258 8 N -0.355 5.355 9 C 0.272 3.728 10 C -0.555 4.555 11 H 0.051 0.949 12 C 0.030 3.970 13 N -0.913 5.913 14 Si 0.967 3.033 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.278 1.278 18 C 0.407 3.593 19 N -0.828 5.828 20 C -0.304 4.304 21 I 0.028 6.972 22 H 0.109 0.891 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.274 0.726 30 H 0.415 0.585 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 -15.245 -2.440 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.393 3.607 5 O -0.371 6.371 6 C -0.106 4.106 7 N -0.087 5.087 8 N -0.146 5.146 9 C 0.154 3.846 10 C -0.594 4.594 11 H 0.069 0.931 12 C -0.172 4.172 13 N -0.551 5.551 14 Si 0.791 3.209 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.203 1.203 18 C 0.173 3.827 19 N -0.379 5.379 20 C -0.460 4.460 21 I 0.172 6.828 22 H 0.128 0.872 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.247 0.753 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.513 -15.686 -2.502 17.168 hybrid contribution -0.223 1.329 0.746 1.540 sum 6.290 -14.357 -1.756 15.772 Atomic orbital electron populations 1.21841 0.90611 1.04549 1.03395 1.23448 0.96992 0.78215 1.03360 1.86676 1.22333 1.34733 1.83373 1.19494 0.81336 0.86772 0.73071 1.90863 1.60312 1.40413 1.45464 1.20584 0.91799 0.91546 1.06678 1.77820 1.15463 0.92741 1.22641 1.49409 1.01414 1.07539 1.56282 1.19428 0.97832 0.69249 0.98114 1.21392 1.50759 0.95608 0.91611 0.93088 1.25614 0.93648 0.96156 1.01759 1.69980 1.46452 1.05877 1.32754 0.85418 0.78643 0.77787 0.79037 1.18992 1.20164 1.20309 1.17683 0.82682 0.88986 0.93322 1.41613 1.02685 1.09470 1.84124 1.23209 0.95386 0.93069 1.34344 1.96219 1.31253 1.56117 1.99242 0.87223 0.91912 0.91679 0.90214 0.90473 0.94691 0.92333 0.91670 0.75312 0.74251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.22 6.20 71.98 0.45 1.67 16 3 O -0.36 -11.85 10.23 -56.43 -0.58 -12.42 16 4 C 0.55 20.15 7.97 70.29 0.56 20.71 16 5 O -0.49 -17.14 14.78 19.87 0.29 -16.85 16 6 C 0.06 2.49 7.11 42.29 0.30 2.79 16 7 N -0.26 -11.72 12.61 -48.48 -0.61 -12.33 16 8 N -0.36 -15.76 3.62 -348.53 -1.26 -17.02 16 9 C 0.27 13.12 6.01 85.64 0.51 13.63 16 10 C -0.56 -28.97 9.39 25.60 0.24 -28.73 16 11 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 12 C 0.03 1.55 5.46 84.66 0.46 2.02 16 13 N -0.91 -48.54 13.29 21.45 0.28 -48.25 16 14 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 15 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 16 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 C 0.41 15.36 7.96 131.09 1.04 16.40 16 19 N -0.83 -24.44 9.11 -55.21 -0.50 -24.94 16 20 C -0.30 -11.22 6.55 22.41 0.15 -11.08 16 21 I 0.03 0.82 38.09 -18.82 -0.72 0.10 16 22 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.06 2.71 7.48 -2.39 -0.02 2.69 16 29 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 30 H 0.42 11.94 8.08 -92.71 -0.75 11.19 16 31 H 0.42 10.16 8.33 -92.71 -0.77 9.39 16 Total: -1.00 -60.51 308.36 3.06 -57.45 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.33 Total: 15.52 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 4.45 Total: 15.59 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -2.09 Total: -102.55 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.28 Total: -29.27 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 53 Polarization: 0.82 SS G_CDS: -0.72 Total: 0.10 kcal Total: -60.51 3.06 -57.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095094683.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.816 kcal (2) G-P(sol) polarization free energy of solvation -60.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds