Wall clock time and date at job start Tue Mar 31 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47107 * 239.99480 * 2 1 3 5 5 O 1.45199 * 109.46960 * 120.00169 * 2 1 3 6 6 C 1.34600 * 117.00327 * 59.99721 * 5 2 1 7 7 O 1.21450 * 119.99788 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00036 * 180.02562 * 6 5 2 9 9 C 1.36332 * 124.80388 * 0.02669 * 8 6 5 10 10 C 1.38709 * 109.23232 * 179.75536 * 9 8 6 11 11 C 1.40821 * 126.84702 * 180.26879 * 10 9 8 12 12 H 1.08004 * 119.99704 * 180.08430 * 11 10 9 13 13 C 1.39827 * 120.00119 * 0.08701 * 11 10 9 14 14 N 1.30984 * 119.99869 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99967 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46779 * 59.99891 * 15 13 11 17 17 H 1.48498 * 109.47157 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47237 * 299.99909 * 15 13 11 19 19 C 1.47813 * 106.30207 * 0.33928 * 10 9 8 20 20 C 1.39155 * 133.64887 * 179.97438 * 19 10 9 21 21 C 1.38000 * 119.69443 * 179.68163 * 20 19 10 22 22 Br 1.89101 * 119.89812 * 180.02562 * 21 20 19 23 23 C 1.38686 * 120.21091 * 359.97438 * 21 20 19 24 24 C 1.37934 * 120.57398 * 359.97438 * 23 21 20 25 25 C 1.38732 * 124.79997 * 179.97438 * 8 6 5 26 26 H 1.09003 * 109.47185 * 300.00483 * 1 2 3 27 27 H 1.09001 * 109.47349 * 60.00036 * 1 2 3 28 28 H 1.09004 * 109.47839 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46964 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47272 * 299.99690 * 3 2 1 31 31 H 1.08995 * 109.47557 * 59.99932 * 3 2 1 32 32 H 1.08995 * 109.47593 * 300.00738 * 4 2 1 33 33 H 1.09008 * 109.46884 * 60.00662 * 4 2 1 34 34 H 1.09000 * 109.47169 * 179.97438 * 4 2 1 35 35 H 1.07997 * 125.38352 * 359.97438 * 9 8 6 36 36 H 0.97000 * 120.00006 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.14870 * 359.65802 * 20 19 10 38 38 H 1.08003 * 119.71699 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.00492 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6522 -1.9720 1.3383 7 8 0.9512 -2.5088 0.5044 8 7 2.0672 -2.6650 2.4171 9 6 2.8526 -2.1610 3.4109 10 6 3.0779 -3.1473 4.3599 11 6 3.8345 -3.0254 5.5413 12 1 3.9389 -3.8708 6.2053 13 6 4.4505 -1.8099 5.8548 14 7 4.3242 -0.7848 5.0493 15 14 5.4535 -1.6481 7.4223 16 1 6.5744 -2.6220 7.3955 17 1 5.9980 -0.2701 7.5215 18 1 4.5862 -1.9238 8.5957 19 6 2.3668 -4.3521 3.8830 20 6 2.2171 -5.6411 4.3856 21 6 1.4641 -6.5636 3.6882 22 35 1.2563 -8.3166 4.3662 23 6 0.8584 -6.2089 2.4921 24 6 0.9993 -4.9338 1.9853 25 6 1.7545 -3.9921 2.6740 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1393 34 1 3.1299 -0.7210 -1.2494 35 1 3.2358 -1.1522 3.4543 36 1 4.7518 0.0583 5.2666 37 1 2.6884 -5.9183 5.3169 38 1 0.2712 -6.9374 1.9526 39 1 0.5239 -4.6676 1.0528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095218163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:56 Heat of formation + Delta-G solvation = -29.699905 kcal Electronic energy + Delta-G solvation = -24783.229900 eV Core-core repulsion = 21123.591009 eV Total energy + Delta-G solvation = -3659.638891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 365.041 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15645 -39.60615 -36.88484 -36.04690 -34.01944 -33.69949 -31.31031 -31.12590 -28.60347 -27.81565 -27.31347 -27.28949 -25.82671 -23.16906 -21.79277 -20.81896 -20.12327 -19.04557 -17.61264 -16.91859 -16.24784 -16.06323 -15.54876 -14.99014 -14.79034 -14.37994 -14.36547 -13.68414 -13.51281 -13.28434 -13.16294 -12.78885 -12.38290 -12.18243 -11.90903 -11.78339 -11.73528 -11.70789 -11.44746 -11.36799 -11.31269 -11.12009 -11.07729 -10.71333 -10.23861 -10.17752 -10.04688 -9.90957 -9.88293 -9.65268 -9.60884 -8.74198 -7.57878 -7.06569 -6.74057 -4.36808 1.62282 1.80393 2.11955 2.50897 2.86119 3.05791 3.08684 3.11855 3.90507 4.07474 4.39965 4.40711 4.81930 4.87118 5.00059 5.26963 5.28879 5.51515 5.53290 5.59581 5.69792 5.77002 5.80475 5.89040 5.93780 5.98482 6.05231 6.09982 6.29589 6.37113 6.44389 6.55053 6.72805 6.79273 6.84545 6.99449 7.11812 7.51295 7.60303 7.71515 8.25526 8.49681 8.70397 8.80131 8.91655 10.20413 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.007619 B = 0.004253 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3673.922897 B = 6581.804583 C =10064.657179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.131 3.869 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.339 6.339 6 C 0.654 3.346 7 O -0.559 6.559 8 N -0.412 5.412 9 C -0.138 4.138 10 C 0.044 3.956 11 C -0.410 4.410 12 H 0.079 0.921 13 C 0.058 3.942 14 N -0.808 5.808 15 Si 0.922 3.078 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.085 4.085 20 C -0.041 4.041 21 C -0.121 4.121 22 Br -0.078 7.078 23 C -0.096 4.096 24 C -0.113 4.113 25 C 0.112 3.888 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.206 0.794 36 H 0.281 0.719 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -2.398 -5.645 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.094 3.906 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.253 6.253 6 C 0.412 3.588 7 O -0.450 6.450 8 N -0.120 5.120 9 C -0.255 4.255 10 C 0.039 3.961 11 C -0.441 4.441 12 H 0.097 0.903 13 C -0.156 4.156 14 N -0.436 5.436 15 Si 0.747 3.253 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.091 4.091 20 C -0.062 4.062 21 C -0.201 4.201 22 Br 0.007 6.993 23 C -0.116 4.116 24 C -0.134 4.134 25 C 0.011 3.989 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.516 -2.697 -5.856 7.872 hybrid contribution 0.471 0.612 0.424 0.881 sum -4.045 -2.084 -5.432 7.086 Atomic orbital electron populations 1.22514 0.94214 1.04982 1.02302 1.22077 0.94277 0.91783 0.82428 1.21828 1.02472 0.92488 1.02852 1.22514 1.01730 1.03403 0.96360 1.86445 1.70613 1.22801 1.45483 1.17803 0.78696 0.80880 0.81383 1.90797 1.40630 1.70587 1.42985 1.41301 1.43412 1.08486 1.18756 1.23550 1.08419 1.02813 0.90673 1.18156 0.95877 0.87362 0.94663 1.18805 1.24686 0.97149 1.03453 0.90280 1.25777 0.96350 0.95040 0.98462 1.69410 1.36486 1.02446 1.35226 0.86108 0.79966 0.78036 0.81145 1.19077 1.20375 1.19075 1.19672 1.00374 0.94414 0.94622 1.20337 0.96305 0.90709 0.98802 1.21249 1.08237 0.90946 0.99710 1.96536 1.97408 1.18292 1.87096 1.20527 1.00565 0.95775 0.94764 1.20317 1.00760 0.91494 1.00836 1.18269 1.00455 0.83619 0.96540 0.92079 0.91350 0.89475 0.91316 0.90437 0.91317 0.89477 0.91355 0.92076 0.77824 0.90780 0.85298 0.85684 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.37 37.15 0.31 -2.22 16 2 C 0.13 1.96 1.13 -90.63 -0.10 1.85 16 3 C -0.14 -1.65 8.85 37.15 0.33 -1.32 16 4 C -0.18 -2.53 8.37 37.16 0.31 -2.22 16 5 O -0.34 -6.65 9.32 -40.22 -0.37 -7.02 16 6 C 0.65 14.02 7.80 54.05 0.42 14.44 16 7 O -0.56 -11.61 10.38 -19.23 -0.20 -11.81 16 8 N -0.41 -9.64 2.85 -64.18 -0.18 -9.83 16 9 C -0.14 -3.48 9.87 -15.38 -0.15 -3.63 16 10 C 0.04 1.12 6.09 -104.83 -0.64 0.48 16 11 C -0.41 -10.26 9.42 -38.01 -0.36 -10.62 16 12 H 0.08 1.87 7.84 -52.48 -0.41 1.46 16 13 C 0.06 1.37 5.49 -17.32 -0.10 1.28 16 14 N -0.81 -19.80 10.32 55.54 0.57 -19.23 16 15 Si 0.92 18.13 29.56 -169.99 -5.02 13.11 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 C -0.09 -1.97 6.32 -104.90 -0.66 -2.64 16 20 C -0.04 -0.83 9.82 -39.33 -0.39 -1.21 16 21 C -0.12 -2.18 6.22 -39.50 -0.25 -2.43 16 22 Br -0.08 -1.17 33.69 -68.01 -2.29 -3.46 16 23 C -0.10 -1.68 9.75 -39.53 -0.39 -2.07 16 24 C -0.11 -2.22 9.51 -39.42 -0.37 -2.59 16 25 C 0.11 2.52 6.68 -83.72 -0.56 1.96 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.21 5.36 5.57 -52.49 -0.29 5.07 16 36 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 37 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 38 H 0.13 1.85 8.06 -52.48 -0.42 1.42 16 39 H 0.13 2.56 6.64 -52.49 -0.35 2.21 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -26.15 344.38 -9.50 -35.65 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.60 Total: 8.34 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.59 Total: -10.94 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.39 Total: -29.06 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.57 Total: -18.83 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -2.29 Total: -3.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.15 -9.50 -35.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095218163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.951 kcal (2) G-P(sol) polarization free energy of solvation -26.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds