Wall clock time and date at job start Tue Mar 31 2020 07:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48499 * 109.46858 * 239.99872 * 3 2 1 5 5 H 1.48500 * 109.46704 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47120 * 119.99722 * 3 2 1 7 7 C 1.38950 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00454 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00480 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99432 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00460 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47439 * 179.97438 * 12 10 9 14 14 C 1.48563 * 111.00371 * 280.50871 * 13 12 10 15 15 C 1.54381 * 104.59234 * 200.95753 * 14 13 12 16 16 C 1.54258 * 105.06315 * 23.85308 * 15 14 13 17 17 C 1.48566 * 111.00088 * 165.08627 * 13 12 10 18 18 H 1.08998 * 110.50927 * 40.21633 * 17 13 12 19 19 C 1.53000 * 110.41018 * 277.82497 * 17 13 12 20 20 C 1.50706 * 109.46752 * 180.57660 * 19 17 13 21 21 C 1.38244 * 119.98832 * 275.11298 * 20 19 17 22 22 C 1.38216 * 120.00521 * 179.76905 * 21 20 19 23 23 C 1.38325 * 119.99258 * 0.50521 * 22 21 20 24 24 Br 1.89103 * 120.00762 * 179.76648 * 23 22 21 25 25 C 1.38321 * 119.97772 * 359.74911 * 23 22 21 26 26 C 1.38213 * 119.99220 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99719 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99779 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46915 * 59.99489 * 12 10 9 30 30 H 1.08996 * 109.47229 * 300.00422 * 12 10 9 31 31 H 1.08999 * 110.40722 * 82.17615 * 14 13 12 32 32 H 1.08998 * 110.50844 * 319.79191 * 14 13 12 33 33 H 1.08994 * 110.32056 * 264.95227 * 15 14 13 34 34 H 1.08997 * 110.31925 * 142.75256 * 15 14 13 35 35 H 1.08999 * 110.32488 * 241.10046 * 16 15 14 36 36 H 1.08996 * 110.40765 * 118.93744 * 16 15 14 37 37 H 1.08997 * 109.47362 * 60.57629 * 19 17 13 38 38 H 1.08997 * 109.46848 * 300.57227 * 19 17 13 39 39 H 1.08000 * 119.99174 * 0.02562 * 21 20 19 40 40 H 1.08005 * 120.00232 * 180.23273 * 22 21 20 41 41 H 1.08007 * 120.00227 * 180.02562 * 25 23 22 42 42 H 1.08007 * 119.99598 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2101 -3.5579 0.0022 12 6 1.2437 -4.8630 0.0032 13 7 2.1982 -5.9796 0.0037 14 6 2.7365 -6.2206 -1.3598 15 6 3.2550 -7.6742 -1.3220 16 6 2.4584 -8.3547 -0.1898 17 6 1.5254 -7.2550 0.3613 18 1 0.5454 -7.3156 -0.1120 19 6 1.3919 -7.3803 1.8803 20 6 0.7204 -8.6861 2.2194 21 6 -0.6593 -8.7735 2.2215 22 6 -1.2754 -9.9722 2.5279 23 6 -0.5116 -11.0817 2.8426 24 35 -1.3543 -12.7202 3.2682 25 6 0.8687 -10.9923 2.8455 26 6 1.4841 -9.7945 2.5344 27 1 -0.4849 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0016 29 1 0.6173 -4.9212 -0.8869 30 1 0.6166 -4.9201 0.8929 31 1 3.5531 -5.5310 -1.5734 32 1 1.9481 -6.1174 -2.1054 33 1 4.3214 -7.6899 -1.0969 34 1 3.0606 -8.1703 -2.2728 35 1 3.1337 -8.7045 0.5910 36 1 1.8729 -9.1856 -0.5833 37 1 0.7925 -6.5537 2.2617 38 1 2.3818 -7.3518 2.3355 39 1 -1.2556 -7.9061 1.9797 40 1 -2.3533 -10.0415 2.5258 41 1 1.4655 -11.8585 3.0907 42 1 2.5619 -9.7247 2.5363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095394186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:57 Heat of formation + Delta-G solvation = -9.968483 kcal Electronic energy + Delta-G solvation = -24078.906995 eV Core-core repulsion = 20490.530906 eV Total energy + Delta-G solvation = -3588.376089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02163 -38.92478 -37.54444 -34.02206 -33.73339 -31.99974 -31.32484 -31.18228 -31.09655 -28.58711 -26.72228 -25.31423 -24.13160 -23.13406 -21.60870 -20.95277 -19.91978 -19.15301 -17.85562 -16.87164 -16.02119 -15.95705 -15.54904 -15.40855 -15.04642 -14.55040 -14.41121 -13.89032 -13.79223 -13.67572 -13.57133 -13.18726 -12.97582 -12.55502 -12.22324 -11.98422 -11.94696 -11.54057 -11.48519 -11.22158 -11.11073 -11.04220 -11.00493 -10.82105 -10.64401 -10.57841 -10.43442 -10.40237 -10.19268 -9.46355 -9.29835 -8.80595 -8.50232 -7.99565 -7.92684 -6.39500 -3.80119 0.81402 1.03838 1.34599 3.21247 3.26596 3.30814 3.32728 3.93204 3.97778 4.24108 4.46159 4.62334 4.63027 4.75965 4.78743 5.00088 5.04021 5.08780 5.20891 5.27975 5.29259 5.37917 5.44821 5.49987 5.64520 5.71313 5.76706 5.80140 5.86606 5.90182 5.93255 5.97005 6.07245 6.11701 6.23735 6.31528 6.37123 6.41892 6.56245 7.13919 7.24227 7.56979 8.08660 8.64968 9.20889 9.57521 10.10105 10.78400 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.020071 B = 0.001812 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.737473 B =15447.025451 C =16417.418002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.033 3.967 13 N -0.479 5.479 14 C 0.039 3.961 15 C -0.124 4.124 16 C -0.115 4.115 17 C 0.066 3.934 18 H 0.051 0.949 19 C -0.073 4.073 20 C -0.053 4.053 21 C -0.112 4.112 22 C -0.089 4.089 23 C -0.098 4.098 24 Br -0.060 7.060 25 C -0.090 4.090 26 C -0.109 4.109 27 H 0.271 0.729 28 H 0.391 0.609 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -26.267 4.414 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.098 4.098 13 N -0.203 5.203 14 C -0.089 4.089 15 C -0.162 4.162 16 C -0.153 4.153 17 C -0.042 4.042 18 H 0.069 0.931 19 C -0.110 4.110 20 C -0.054 4.054 21 C -0.131 4.131 22 C -0.108 4.108 23 C -0.177 4.177 24 Br 0.025 6.975 25 C -0.109 4.109 26 C -0.127 4.127 27 H 0.081 0.919 28 H 0.224 0.776 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.718 -26.552 4.950 27.264 hybrid contribution -0.875 1.086 -0.651 1.539 sum -4.594 -25.466 4.299 26.232 Atomic orbital electron populations 1.69606 1.05904 1.28172 1.50858 1.25248 0.95634 0.99661 0.97477 0.85928 0.78756 0.80548 0.79050 1.19961 1.21019 1.19909 1.19634 0.93294 0.82241 1.47509 0.88033 1.41861 1.09121 1.04581 1.64922 1.19708 0.88412 0.84410 0.84291 1.90514 1.13657 1.86981 1.54688 1.22073 0.94165 0.92059 1.01545 1.65007 1.30041 1.01101 1.24112 1.23119 1.00036 0.96595 0.89158 1.22294 1.00589 0.95233 0.98082 1.22318 0.97902 0.96853 0.98255 1.22604 0.96430 0.90730 0.94455 0.93138 1.20610 1.01664 0.93209 0.95557 1.20103 0.93548 0.95773 0.95954 1.21134 0.94362 0.97547 1.00035 1.21097 1.00013 0.91595 0.98141 1.21746 0.95174 0.92430 1.08390 1.96706 1.80353 1.27377 1.93069 1.21094 0.92459 0.98584 0.98808 1.21135 1.00320 0.91785 0.99500 0.91890 0.77589 0.93119 0.89566 0.88936 0.94424 0.91017 0.91781 0.91003 0.91766 0.90320 0.89509 0.85029 0.85149 0.85175 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -14.37 5.29 -10.97 -0.06 -14.42 16 10 C 0.45 10.51 7.68 -10.99 -0.08 10.43 16 11 O -0.58 -15.58 15.21 5.55 0.08 -15.50 16 12 C 0.03 0.59 5.30 -4.98 -0.03 0.56 16 13 N -0.48 -7.73 4.57 -223.57 -1.02 -8.75 16 14 C 0.04 0.59 6.05 -2.18 -0.01 0.58 16 15 C -0.12 -1.46 7.00 -25.35 -0.18 -1.64 16 16 C -0.12 -1.24 5.72 -25.35 -0.14 -1.38 16 17 C 0.07 0.81 2.30 -66.07 -0.15 0.66 16 18 H 0.05 0.60 8.00 -51.93 -0.42 0.19 16 19 C -0.07 -0.81 4.96 -27.88 -0.14 -0.95 16 20 C -0.05 -0.51 4.75 -104.62 -0.50 -1.01 16 21 C -0.11 -1.04 9.72 -39.59 -0.38 -1.43 16 22 C -0.09 -0.80 9.79 -39.56 -0.39 -1.19 16 23 C -0.10 -0.90 6.22 -39.52 -0.25 -1.15 16 24 Br -0.06 -0.51 33.70 -68.01 -2.29 -2.81 16 25 C -0.09 -0.78 9.79 -39.56 -0.39 -1.17 16 26 C -0.11 -0.96 8.93 -39.59 -0.35 -1.32 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 29 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 30 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 31 H 0.09 1.66 7.59 -51.93 -0.39 1.27 16 32 H 0.04 0.55 7.69 -51.93 -0.40 0.15 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.73 7.07 -51.93 -0.37 0.36 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.91 7.25 -51.93 -0.38 0.54 16 38 H 0.09 1.01 8.01 -51.93 -0.42 0.60 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.13 1.00 7.66 -52.48 -0.40 0.60 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -30.88 366.07 -11.21 -42.09 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.91 Total: 8.63 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -3.23 Total: -6.96 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.36 Total: -47.06 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.88 -11.21 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.126 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds