Wall clock time and date at job start Tue Mar 31 2020 07:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48502 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46743 * 299.99542 * 3 2 1 6 6 H 1.48497 * 109.47490 * 59.99472 * 3 2 1 7 7 C 1.38950 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99816 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99342 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00437 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99838 * 179.72623 * 10 9 7 13 13 N 1.46899 * 109.47282 * 179.97438 * 12 10 9 14 14 C 1.47841 * 111.00059 * 293.08179 * 13 12 10 15 15 C 1.54904 * 104.79821 * 213.63661 * 14 13 12 16 16 C 1.55149 * 101.65081 * 37.06795 * 15 14 13 17 17 C 1.47440 * 110.99768 * 172.23816 * 13 12 10 18 18 H 1.09007 * 109.88652 * 242.65884 * 17 13 12 19 19 C 1.52996 * 109.89383 * 3.85256 * 17 13 12 20 20 C 1.50697 * 109.47237 * 182.15594 * 19 17 13 21 21 C 1.38240 * 119.98726 * 264.10465 * 20 19 17 22 22 C 1.38227 * 120.00713 * 179.76999 * 21 20 19 23 23 C 1.38325 * 119.98766 * 0.50970 * 22 21 20 24 24 Br 1.89104 * 120.00702 * 179.72603 * 23 22 21 25 25 C 1.38318 * 119.98140 * 359.74440 * 23 22 21 26 26 C 1.38220 * 119.99095 * 359.97438 * 25 23 22 27 27 H 0.96998 * 119.99769 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00554 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.47115 * 300.00210 * 12 10 9 30 30 H 1.08996 * 109.47120 * 59.99832 * 12 10 9 31 31 H 1.09002 * 110.37315 * 332.46398 * 14 13 12 32 32 H 1.08997 * 110.37811 * 94.80490 * 14 13 12 33 33 H 1.08996 * 110.99090 * 278.97962 * 15 14 13 34 34 H 1.08996 * 111.02637 * 155.17337 * 15 14 13 35 35 H 1.09002 * 110.70288 * 205.96685 * 16 15 14 36 36 H 1.09001 * 110.70161 * 82.73387 * 16 15 14 37 37 H 1.09008 * 109.46967 * 302.15518 * 19 17 13 38 38 H 1.09003 * 109.47053 * 62.15534 * 19 17 13 39 39 H 1.08003 * 120.00048 * 0.02562 * 21 20 19 40 40 H 1.08004 * 120.00250 * 180.23410 * 22 21 20 41 41 H 1.08002 * 120.00622 * 179.97438 * 25 23 22 42 42 H 1.07997 * 119.99559 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0068 13 7 2.1985 -5.9795 0.0049 14 6 2.9483 -6.0333 -1.2681 15 6 3.1926 -7.5421 -1.5199 16 6 1.8676 -8.1641 -1.0056 17 6 1.5060 -7.2669 0.1967 18 1 1.8420 -7.7344 1.1224 19 6 -0.0067 -7.0427 0.2424 20 6 -0.7020 -8.3563 0.4915 21 6 -1.1932 -9.0906 -0.5718 22 6 -1.8268 -10.2978 -0.3442 23 6 -1.9786 -10.7659 0.9486 24 35 -2.8522 -12.4137 1.2612 25 6 -1.4916 -10.0283 2.0125 26 6 -0.8530 -8.8241 1.7835 27 1 -0.4850 0.8401 -0.0004 28 1 0.3535 -2.3907 -0.0002 29 1 0.6209 -4.9186 0.8995 30 1 0.6136 -4.9228 -0.8804 31 1 2.3554 -5.6049 -2.0762 32 1 3.8975 -5.5061 -1.1722 33 1 4.0433 -7.9018 -0.9411 34 1 3.3323 -7.7438 -2.5819 35 1 2.0244 -9.1940 -0.6847 36 1 1.0943 -8.1117 -1.7721 37 1 -0.2467 -6.3464 1.0461 38 1 -0.3416 -6.6290 -0.7089 39 1 -1.0782 -8.7230 -1.5808 40 1 -2.2071 -10.8732 -1.1752 41 1 -1.6103 -10.3933 3.0220 42 1 -0.4731 -8.2479 2.6142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095394187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:03 Heat of formation + Delta-G solvation = -2.927523 kcal Electronic energy + Delta-G solvation = -24283.418889 eV Core-core repulsion = 20695.348119 eV Total energy + Delta-G solvation = -3588.070770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -40.25289 -39.03104 -37.54429 -34.00490 -33.69729 -32.07169 -31.34450 -31.12992 -31.07683 -28.58647 -26.68676 -25.33838 -24.23966 -23.16226 -21.70233 -21.05502 -20.03035 -18.77280 -17.80412 -17.04205 -16.31033 -15.81094 -15.55917 -15.24378 -15.16879 -14.65334 -14.40488 -13.90878 -13.82254 -13.72929 -13.40823 -13.32388 -12.89243 -12.59302 -12.31972 -12.07538 -11.70499 -11.56255 -11.45142 -11.28799 -11.18295 -11.08954 -10.98010 -10.83057 -10.64544 -10.58522 -10.49783 -10.33555 -10.21343 -9.49187 -9.30771 -8.83517 -8.41265 -7.95528 -7.81105 -6.40727 -3.81236 0.80313 1.02722 1.34060 3.16670 3.27165 3.31935 3.34385 3.91704 4.01710 4.23411 4.43662 4.59478 4.61175 4.66497 4.82329 4.85379 5.01968 5.06234 5.19037 5.24914 5.31750 5.34595 5.38993 5.47136 5.64451 5.68798 5.71797 5.81504 5.86144 5.86698 5.91585 5.98271 6.00089 6.15214 6.29101 6.33462 6.35836 6.52611 6.54755 7.28489 7.31841 7.56446 8.08034 8.63557 9.19878 9.56261 10.08439 10.77228 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.001875 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.816034 B =14931.805885 C =15935.563897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.036 3.964 13 N -0.499 5.499 14 C 0.052 3.948 15 C -0.132 4.132 16 C -0.136 4.136 17 C 0.080 3.920 18 H 0.086 0.914 19 C -0.108 4.108 20 C -0.052 4.052 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.098 4.098 24 Br -0.060 7.060 25 C -0.088 4.088 26 C -0.110 4.110 27 H 0.270 0.730 28 H 0.391 0.609 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 -25.316 0.147 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.095 4.095 13 N -0.223 5.223 14 C -0.075 4.075 15 C -0.170 4.170 16 C -0.174 4.174 17 C -0.028 4.028 18 H 0.104 0.896 19 C -0.146 4.146 20 C -0.053 4.053 21 C -0.130 4.130 22 C -0.109 4.109 23 C -0.177 4.177 24 Br 0.025 6.975 25 C -0.108 4.108 26 C -0.129 4.129 27 H 0.080 0.920 28 H 0.224 0.776 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.986 -25.664 0.680 26.607 hybrid contribution -0.787 1.110 -0.707 1.533 sum -7.773 -24.554 -0.027 25.756 Atomic orbital electron populations 1.69622 1.05910 1.27978 1.50959 1.25253 0.95632 0.99677 0.97486 0.85817 0.79720 0.81233 0.77682 1.19238 1.20813 1.20770 1.19737 0.93355 0.82213 1.47274 0.87912 1.41866 1.09128 1.04596 1.64794 1.19803 0.88449 0.84590 0.84302 1.90506 1.13716 1.87016 1.54840 1.22199 0.94409 0.91470 1.01471 1.63458 1.23688 1.00464 1.34680 1.23048 1.00096 0.95092 0.89248 1.22750 0.97538 0.95949 1.00789 1.22874 0.97706 0.99291 0.97533 1.22511 0.90388 0.90780 0.99145 0.89590 1.21452 0.95529 0.93841 1.03781 1.20042 0.95896 0.96222 0.93108 1.21108 0.98352 0.94275 0.99230 1.21084 0.98400 0.96289 0.95108 1.21744 1.05153 0.94504 0.96328 1.96707 1.77738 1.26304 1.96712 1.21102 0.97031 0.94434 0.98198 1.21125 0.99012 0.95753 0.97008 0.91982 0.77574 0.89011 0.93277 0.94182 0.88756 0.90823 0.91194 0.91154 0.91529 0.89232 0.90267 0.85235 0.85199 0.85102 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.24 5.29 -10.96 -0.06 -14.29 16 10 C 0.44 10.34 7.56 -10.98 -0.08 10.26 16 11 O -0.58 -15.47 14.45 5.55 0.08 -15.39 16 12 C 0.04 0.62 4.17 -4.98 -0.02 0.60 16 13 N -0.50 -8.06 4.90 -224.79 -1.10 -9.16 16 14 C 0.05 0.83 5.66 -2.30 -0.01 0.82 16 15 C -0.13 -1.57 7.08 -24.59 -0.17 -1.74 16 16 C -0.14 -1.43 5.63 -24.90 -0.14 -1.57 16 17 C 0.08 0.97 3.48 -66.73 -0.23 0.74 16 18 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 19 C -0.11 -1.14 3.50 -27.89 -0.10 -1.24 16 20 C -0.05 -0.49 4.74 -104.62 -0.50 -0.99 16 21 C -0.11 -0.98 8.90 -39.58 -0.35 -1.34 16 22 C -0.09 -0.78 9.79 -39.55 -0.39 -1.17 16 23 C -0.10 -0.90 6.22 -39.52 -0.25 -1.15 16 24 Br -0.06 -0.51 33.70 -68.01 -2.29 -2.80 16 25 C -0.09 -0.79 9.79 -39.56 -0.39 -1.17 16 26 C -0.11 -1.01 9.72 -39.59 -0.38 -1.40 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 29 H 0.09 1.43 6.14 -51.93 -0.32 1.11 16 30 H 0.05 0.77 6.83 -51.93 -0.35 0.42 16 31 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.09 1.76 7.27 -51.93 -0.38 1.38 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.65 7.02 -51.93 -0.36 0.29 16 37 H 0.09 0.97 6.22 -51.92 -0.32 0.65 16 38 H 0.08 0.84 6.92 -51.93 -0.36 0.48 16 39 H 0.13 0.99 7.65 -52.48 -0.40 0.59 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -30.70 359.52 -11.20 -41.89 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.69 Total: 9.35 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.25 Total: -7.25 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.44 Total: -47.22 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.08 Total: -15.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.70 -11.20 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.966 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds