Wall clock time and date at job start Tue Mar 31 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47399 * 2 1 4 4 C 1.47200 * 109.47563 * 240.00004 * 2 1 3 5 5 N 2.60803 * 109.47372 * 240.00053 * 2 1 3 6 6 C 1.53003 * 109.46972 * 119.99931 * 2 1 3 7 7 N 1.46503 * 109.47113 * 295.00121 * 6 2 1 8 8 C 1.34779 * 119.99814 * 180.27770 * 7 6 2 9 9 O 1.21593 * 119.99861 * 359.72243 * 8 7 6 10 10 N 1.34772 * 119.99919 * 179.72386 * 8 7 6 11 11 C 1.40100 * 120.00230 * 175.87743 * 10 8 7 12 12 C 1.38861 * 120.00890 * 217.40160 * 11 10 8 13 13 C 1.38067 * 119.98652 * 179.70069 * 12 11 10 14 14 C 1.38783 * 120.00980 * 0.57335 * 13 12 11 15 15 O 1.35912 * 119.99407 * 179.75092 * 14 13 12 16 16 C 1.35620 * 117.99739 * 258.45988 * 15 14 13 17 17 C 1.39369 * 119.82140 * 5.07866 * 16 15 14 18 18 C 1.36410 * 120.17927 * 179.72154 * 17 16 15 19 19 C 1.40847 * 119.81442 * 0.57866 * 18 17 16 20 20 C 1.41185 * 120.17786 * 179.67910 * 19 18 17 21 21 H 1.07995 * 120.00522 * 158.44072 * 20 19 18 22 22 C 1.39883 * 119.99547 * 338.44111 * 20 19 18 23 23 N 1.30891 * 120.00106 * 328.59720 * 22 20 19 24 24 Si 1.86797 * 119.99986 * 148.59288 * 22 20 19 25 25 H 1.48504 * 109.47190 * 94.96294 * 24 22 20 26 26 H 1.48501 * 109.47268 * 214.96244 * 24 22 20 27 27 H 1.48499 * 109.47184 * 334.96589 * 24 22 20 28 28 C 1.40856 * 119.65241 * 359.69491 * 19 18 17 29 29 C 1.36405 * 119.81443 * 0.02562 * 28 19 18 30 30 C 1.38792 * 120.02014 * 359.72204 * 14 13 12 31 31 C 1.38066 * 120.00395 * 359.97438 * 30 14 13 32 32 H 1.09000 * 109.46800 * 60.00058 * 1 2 3 33 33 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47308 * 300.00211 * 1 2 3 35 35 H 1.09006 * 109.47089 * 175.00189 * 6 2 1 36 36 H 1.09000 * 109.46954 * 55.00222 * 6 2 1 37 37 H 0.97001 * 119.99646 * 359.97438 * 7 6 2 38 38 H 0.97003 * 119.99917 * 355.88205 * 10 8 7 39 39 H 1.07992 * 120.00919 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.99724 * 180.27972 * 13 12 11 41 41 H 1.07993 * 119.90784 * 359.97438 * 17 16 15 42 42 H 1.08002 * 120.08939 * 180.25042 * 18 17 16 43 43 H 0.96996 * 120.00339 * 180.02562 * 23 22 20 44 44 H 1.07997 * 120.09353 * 179.97438 * 28 19 18 45 45 H 1.07996 * 119.90929 * 180.02562 * 29 28 19 46 46 H 1.07996 * 119.99532 * 180.02562 * 30 14 13 47 47 H 1.07997 * 120.00103 * 179.97438 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0208 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2493 7 7 1.6523 0.0354 2.4424 8 6 2.0007 -0.4104 3.6657 9 8 2.6323 -1.4432 3.7793 10 7 1.6489 0.2885 4.7630 11 6 1.9351 -0.2177 6.0376 12 6 1.0303 -0.0379 7.0756 13 6 1.3100 -0.5423 8.3300 14 6 2.5005 -1.2187 8.5565 15 8 2.7777 -1.7108 9.7927 16 6 3.6371 -1.0141 10.5772 17 6 4.1218 0.2202 10.1484 18 6 4.9821 0.9297 10.9341 19 6 5.3898 0.4060 12.1763 20 6 6.2852 1.1307 12.9926 21 1 6.3328 0.9300 14.0527 22 6 7.1108 2.1088 12.4283 23 7 7.5351 1.9762 11.1971 24 14 7.6076 3.6041 13.4315 25 1 8.9282 3.3588 14.0648 26 1 7.6979 4.7895 12.5416 27 1 6.5917 3.8527 14.4857 28 6 4.8998 -0.8449 12.5999 29 6 4.0357 -1.5393 11.8051 30 6 3.4078 -1.3934 7.5209 31 6 3.1261 -0.8946 6.2647 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.1263 -0.7995 1.2057 36 1 1.6053 -1.7198 1.2952 37 1 1.1488 0.8595 2.3517 38 1 1.1976 1.1421 4.6703 39 1 0.1061 0.4926 6.9006 40 1 0.6044 -0.4065 9.1362 41 1 3.8122 0.6179 9.1932 42 1 5.3536 1.8879 10.6021 43 1 8.1079 2.6542 10.8059 44 1 5.2081 -1.2534 13.5509 45 1 3.6588 -2.4982 12.1285 46 1 4.3339 -1.9201 7.6976 47 1 3.8323 -1.0302 5.4590 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095410867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:32 Heat of formation + Delta-G solvation = 17.929682 kcal Electronic energy + Delta-G solvation = -30172.095802 eV Core-core repulsion = 25899.508666 eV Total energy + Delta-G solvation = -4272.587136 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -40.91552 -39.82664 -38.42949 -37.69360 -36.55762 -35.78408 -34.54071 -33.46470 -32.90864 -30.84715 -29.68044 -29.56951 -28.50481 -27.07262 -25.04241 -23.96995 -22.91706 -22.39548 -21.31873 -21.16738 -20.40266 -19.26286 -17.87134 -17.72184 -17.62120 -17.35998 -16.36195 -15.90041 -15.61146 -15.52991 -15.27788 -14.97292 -14.74867 -14.14010 -14.02050 -13.97816 -13.77908 -13.50100 -13.32861 -13.26423 -13.12168 -12.95830 -12.71231 -12.45839 -12.43306 -12.26480 -12.07314 -12.00689 -11.81647 -11.73211 -11.29547 -11.12204 -11.02179 -10.68849 -10.50800 -10.23541 -9.99644 -9.88830 -9.62208 -9.41979 -8.95982 -8.80262 -7.87707 -7.66706 -7.18197 -6.86998 -4.25578 1.29831 1.53963 1.94645 2.20208 2.36340 2.72928 2.82708 2.95438 3.05041 3.07434 3.20817 3.26103 3.71455 3.84831 3.89829 3.96591 4.15770 4.37481 4.41447 4.48656 4.93246 4.95655 5.00916 5.09510 5.10176 5.26900 5.42200 5.49714 5.54385 5.59316 5.67481 5.85177 6.02031 6.14696 6.15783 6.23039 6.24605 6.52953 6.61055 6.72741 6.76821 6.89182 6.96621 6.99853 7.05233 7.20216 7.45310 7.53567 7.55228 7.86778 7.96471 8.13442 8.18715 8.46222 8.66744 8.83343 8.97807 10.05640 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.001647 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.945387 B =17001.248690 C =18160.937129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.004 4.004 3 H 0.123 0.877 4 C 0.210 3.790 5 N -0.420 5.420 6 C 0.145 3.855 7 N -0.743 5.743 8 C 0.705 3.295 9 O -0.567 6.567 10 N -0.682 5.682 11 C 0.139 3.861 12 C -0.129 4.129 13 C -0.117 4.117 14 C 0.109 3.891 15 O -0.276 6.276 16 C -0.031 4.031 17 C -0.148 4.148 18 C -0.151 4.151 19 C 0.097 3.903 20 C -0.469 4.469 21 H 0.081 0.919 22 C 0.087 3.913 23 N -0.774 5.774 24 Si 0.896 3.104 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.258 1.258 28 C -0.207 4.207 29 C -0.097 4.097 30 C -0.119 4.119 31 C -0.099 4.099 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.399 0.601 38 H 0.405 0.595 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.282 0.718 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.132 0.868 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 3.269 -18.554 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 H 0.140 0.860 4 C -0.109 4.109 5 N -0.095 5.095 6 C 0.020 3.980 7 N -0.400 5.400 8 C 0.405 3.595 9 O -0.443 6.443 10 N -0.330 5.330 11 C 0.045 3.955 12 C -0.150 4.150 13 C -0.136 4.136 14 C 0.065 3.935 15 O -0.190 6.190 16 C -0.071 4.071 17 C -0.167 4.167 18 C -0.171 4.171 19 C 0.095 3.905 20 C -0.497 4.497 21 H 0.099 0.901 22 C -0.134 4.134 23 N -0.398 5.398 24 Si 0.719 3.281 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.182 1.182 28 C -0.226 4.226 29 C -0.116 4.116 30 C -0.138 4.138 31 C -0.119 4.119 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.234 0.766 38 H 0.240 0.760 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.150 0.850 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.400 1.413 -20.045 24.153 hybrid contribution -0.167 1.925 0.416 1.977 sum -13.567 3.338 -19.629 24.094 Atomic orbital electron populations 1.21878 0.91224 1.04007 1.03609 1.18995 0.97753 0.99618 0.86240 0.85961 1.28697 0.93695 0.94004 0.94481 1.81291 1.08249 1.08639 1.11353 1.21112 1.01087 0.95105 0.80730 1.44904 1.61758 1.29045 1.04306 1.15814 0.80084 0.83390 0.80184 1.91000 1.43598 1.24491 1.85168 1.42443 1.63294 1.23848 1.03415 1.17375 0.94322 1.00568 0.83190 1.20620 0.98526 1.03385 0.92434 1.21086 0.98230 0.97188 0.97130 1.18682 0.93831 0.95733 0.85205 1.84065 1.62790 1.48991 1.23183 1.18593 1.01033 0.94198 0.93312 1.20556 1.01566 0.95043 0.99548 1.20674 0.99740 1.00144 0.96522 1.17561 0.91032 0.90165 0.91739 1.19432 1.17779 1.16431 0.96033 0.90103 1.25909 0.93874 0.98806 0.94836 1.69950 1.22750 1.32022 1.15065 0.86515 0.79586 0.80970 0.81021 1.19512 1.19978 1.18160 1.20505 1.04804 0.96429 1.00875 1.19608 0.99907 0.99201 0.92840 1.21475 0.99940 1.00107 0.92297 1.21042 0.95467 0.98539 0.96871 0.91158 0.91174 0.90342 0.90255 0.90133 0.76629 0.75956 0.85545 0.85006 0.88726 0.87327 0.90691 0.88121 0.88401 0.85047 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.14 9.02 37.16 0.34 0.20 16 2 C 0.00 -0.01 2.80 -93.41 -0.26 -0.27 16 3 H 0.12 -0.03 8.14 -51.93 -0.42 -0.46 16 4 C 0.21 1.26 14.65 -20.76 -0.30 0.96 16 5 N -0.42 -4.06 18.54 42.15 0.78 -3.27 16 6 C 0.15 0.67 5.02 -4.04 -0.02 0.65 16 7 N -0.74 -3.43 5.29 -65.22 -0.34 -3.77 16 8 C 0.70 6.75 8.39 -86.92 -0.73 6.02 16 9 O -0.57 -8.14 13.96 5.28 0.07 -8.07 16 10 N -0.68 -5.88 5.34 -14.19 -0.08 -5.96 16 11 C 0.14 1.75 6.25 -83.62 -0.52 1.22 16 12 C -0.13 -1.55 9.96 -39.41 -0.39 -1.94 16 13 C -0.12 -1.75 9.98 -39.44 -0.39 -2.14 16 14 C 0.11 1.97 4.21 -39.18 -0.16 1.80 16 15 O -0.28 -5.80 9.96 -2.79 -0.03 -5.83 16 16 C -0.03 -0.71 6.65 -38.74 -0.26 -0.97 16 17 C -0.15 -3.49 8.95 -39.82 -0.36 -3.85 16 18 C -0.15 -3.89 8.73 -39.25 -0.34 -4.23 16 19 C 0.10 2.57 5.58 -106.80 -0.60 1.97 16 20 C -0.47 -12.21 8.95 -37.85 -0.34 -12.55 16 21 H 0.08 2.03 8.01 -52.49 -0.42 1.61 16 22 C 0.09 2.13 4.81 -17.34 -0.08 2.05 16 23 N -0.77 -19.65 11.67 55.54 0.65 -19.00 16 24 Si 0.90 18.08 29.66 -169.99 -5.04 13.04 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 28 C -0.21 -5.04 9.74 -39.25 -0.38 -5.42 16 29 C -0.10 -2.23 9.92 -39.82 -0.40 -2.63 16 30 C -0.12 -2.05 9.28 -39.44 -0.37 -2.41 16 31 C -0.10 -1.51 8.67 -39.41 -0.34 -1.85 16 32 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 -0.04 7.18 -51.93 -0.37 -0.41 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.40 0.37 7.67 -40.82 -0.31 0.05 16 38 H 0.41 1.88 8.84 -40.82 -0.36 1.52 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.09 2.08 6.52 -52.49 -0.34 1.74 16 42 H 0.11 2.84 6.46 -52.49 -0.34 2.51 16 43 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 44 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 45 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 46 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 47 H 0.14 2.14 6.44 -52.49 -0.34 1.81 16 LS Contribution 407.72 15.07 6.14 6.14 Total: -1.00 -34.00 407.72 -9.60 -43.60 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.85 Total: 6.51 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -5.91 Total: -23.39 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 1.01 Total: -32.01 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.05 Total: -13.90 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.00 -9.60 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095410867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.533 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds