Wall clock time and date at job start Tue Mar 31 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47399 * 2 1 4 4 C 1.47200 * 109.47563 * 240.00004 * 2 1 3 5 5 N 2.60803 * 109.47372 * 240.00053 * 2 1 3 6 6 C 1.53003 * 109.46972 * 119.99931 * 2 1 3 7 7 N 1.46503 * 109.47113 * 295.00121 * 6 2 1 8 8 C 1.34779 * 119.99814 * 180.27770 * 7 6 2 9 9 O 1.21593 * 119.99861 * 359.72243 * 8 7 6 10 10 N 1.34772 * 119.99919 * 179.72386 * 8 7 6 11 11 C 1.40100 * 120.00230 * 175.87743 * 10 8 7 12 12 C 1.38861 * 120.00890 * 217.40160 * 11 10 8 13 13 C 1.38067 * 119.98652 * 179.70069 * 12 11 10 14 14 C 1.38783 * 120.00980 * 0.57335 * 13 12 11 15 15 O 1.35912 * 119.99407 * 179.75092 * 14 13 12 16 16 C 1.35620 * 117.99739 * 258.45988 * 15 14 13 17 17 C 1.39369 * 119.82140 * 5.07866 * 16 15 14 18 18 C 1.36410 * 120.17927 * 179.72154 * 17 16 15 19 19 C 1.40847 * 119.81442 * 0.57866 * 18 17 16 20 20 C 1.41185 * 120.17786 * 179.67910 * 19 18 17 21 21 H 1.07995 * 120.00522 * 158.44072 * 20 19 18 22 22 C 1.39883 * 119.99547 * 338.44111 * 20 19 18 23 23 N 1.30891 * 120.00106 * 328.59720 * 22 20 19 24 24 Si 1.86797 * 119.99986 * 148.59288 * 22 20 19 25 25 H 1.48504 * 109.47190 * 94.96294 * 24 22 20 26 26 H 1.48501 * 109.47268 * 214.96244 * 24 22 20 27 27 H 1.48499 * 109.47184 * 334.96589 * 24 22 20 28 28 C 1.40856 * 119.65241 * 359.69491 * 19 18 17 29 29 C 1.36405 * 119.81443 * 0.02562 * 28 19 18 30 30 C 1.38792 * 120.02014 * 359.72204 * 14 13 12 31 31 C 1.38066 * 120.00395 * 359.97438 * 30 14 13 32 32 H 1.09000 * 109.46800 * 60.00058 * 1 2 3 33 33 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47308 * 300.00211 * 1 2 3 35 35 H 1.09006 * 109.47089 * 175.00189 * 6 2 1 36 36 H 1.09000 * 109.46954 * 55.00222 * 6 2 1 37 37 H 0.97001 * 119.99646 * 359.97438 * 7 6 2 38 38 H 0.97003 * 119.99917 * 355.88205 * 10 8 7 39 39 H 1.07992 * 120.00919 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.99724 * 180.27972 * 13 12 11 41 41 H 1.07993 * 119.90784 * 359.97438 * 17 16 15 42 42 H 1.08002 * 120.08939 * 180.25042 * 18 17 16 43 43 H 0.96996 * 120.00339 * 180.02562 * 23 22 20 44 44 H 1.07997 * 120.09353 * 179.97438 * 28 19 18 45 45 H 1.07996 * 119.90929 * 180.02562 * 29 28 19 46 46 H 1.07996 * 119.99532 * 180.02562 * 30 14 13 47 47 H 1.07997 * 120.00103 * 179.97438 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0208 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2493 7 7 1.6523 0.0354 2.4424 8 6 2.0007 -0.4104 3.6657 9 8 2.6323 -1.4432 3.7793 10 7 1.6489 0.2885 4.7630 11 6 1.9351 -0.2177 6.0376 12 6 1.0303 -0.0379 7.0756 13 6 1.3100 -0.5423 8.3300 14 6 2.5005 -1.2187 8.5565 15 8 2.7777 -1.7108 9.7927 16 6 3.6371 -1.0141 10.5772 17 6 4.1218 0.2202 10.1484 18 6 4.9821 0.9297 10.9341 19 6 5.3898 0.4060 12.1763 20 6 6.2852 1.1307 12.9926 21 1 6.3328 0.9300 14.0527 22 6 7.1108 2.1088 12.4283 23 7 7.5351 1.9762 11.1971 24 14 7.6076 3.6041 13.4315 25 1 8.9282 3.3588 14.0648 26 1 7.6979 4.7895 12.5416 27 1 6.5917 3.8527 14.4857 28 6 4.8998 -0.8449 12.5999 29 6 4.0357 -1.5393 11.8051 30 6 3.4078 -1.3934 7.5209 31 6 3.1261 -0.8946 6.2647 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.1263 -0.7995 1.2057 36 1 1.6053 -1.7198 1.2952 37 1 1.1488 0.8595 2.3517 38 1 1.1976 1.1421 4.6703 39 1 0.1061 0.4926 6.9006 40 1 0.6044 -0.4065 9.1362 41 1 3.8122 0.6179 9.1932 42 1 5.3536 1.8879 10.6021 43 1 8.1079 2.6542 10.8059 44 1 5.2081 -1.2534 13.5509 45 1 3.6588 -2.4982 12.1285 46 1 4.3339 -1.9201 7.6976 47 1 3.8323 -1.0302 5.4590 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095410867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:29 Heat of formation + Delta-G solvation = -2.738360 kcal Electronic energy + Delta-G solvation = -30172.992036 eV Core-core repulsion = 25899.508666 eV Total energy + Delta-G solvation = -4273.483370 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.85091 -41.14893 -39.45791 -38.63059 -38.04444 -36.43559 -35.62504 -35.20105 -33.42241 -32.01038 -31.51102 -31.32385 -29.67965 -27.52899 -26.78199 -24.66621 -23.98870 -23.53915 -23.05467 -22.26682 -21.78704 -19.95843 -19.31324 -19.21043 -18.72333 -18.13125 -17.48942 -17.09244 -16.68152 -16.51071 -16.31059 -15.94148 -15.77843 -15.51676 -15.32138 -14.85553 -14.61040 -14.53532 -14.48169 -14.32740 -14.13761 -14.07122 -13.95363 -13.91859 -13.61697 -13.49741 -13.29215 -12.93217 -12.76817 -12.65210 -12.54633 -12.29070 -12.25213 -11.96198 -11.81743 -11.74114 -11.51246 -11.28097 -11.05366 -10.77055 -10.18763 -9.97187 -9.56414 -9.10372 -8.93423 -8.70350 -6.19347 0.10600 0.38019 0.93749 1.04298 1.33915 1.39694 1.48216 1.58609 1.73889 1.80560 2.00313 2.21469 2.49104 2.63843 2.82951 3.05298 3.32978 3.66618 3.67757 3.92461 3.93232 3.98581 4.23871 4.30865 4.32670 4.40123 4.47717 4.52161 4.69108 4.71677 4.78618 4.94419 4.98179 5.02768 5.06101 5.08986 5.15017 5.25359 5.29590 5.31945 5.40024 5.44265 5.54208 5.54994 5.67324 5.91284 5.95748 5.98279 6.04600 6.25618 6.51155 6.57094 6.87253 6.91402 7.00887 7.16532 7.48887 8.25279 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.001647 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.945387 B =17001.248690 C =18160.937129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.010 3.990 3 H 0.160 0.840 4 C 0.238 3.762 5 N -0.490 5.490 6 C 0.146 3.854 7 N -0.714 5.714 8 C 0.701 3.299 9 O -0.618 6.618 10 N -0.666 5.666 11 C 0.155 3.845 12 C -0.111 4.111 13 C -0.115 4.115 14 C 0.066 3.934 15 O -0.283 6.283 16 C -0.024 4.024 17 C -0.147 4.147 18 C -0.171 4.171 19 C 0.067 3.933 20 C -0.505 4.505 21 H 0.080 0.920 22 C 0.048 3.952 23 N -0.809 5.809 24 Si 0.973 3.027 25 H -0.261 1.261 26 H -0.265 1.265 27 H -0.257 1.257 28 C -0.216 4.216 29 C -0.105 4.105 30 C -0.135 4.135 31 C -0.112 4.112 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.422 0.578 38 H 0.430 0.570 39 H 0.176 0.824 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.291 0.709 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 5.866 -19.500 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 H 0.177 0.823 4 C -0.080 4.080 5 N -0.166 5.166 6 C 0.019 3.981 7 N -0.372 5.372 8 C 0.401 3.599 9 O -0.498 6.498 10 N -0.316 5.316 11 C 0.060 3.940 12 C -0.131 4.131 13 C -0.134 4.134 14 C 0.023 3.977 15 O -0.197 6.197 16 C -0.065 4.065 17 C -0.165 4.165 18 C -0.191 4.191 19 C 0.065 3.935 20 C -0.533 4.533 21 H 0.098 0.902 22 C -0.170 4.170 23 N -0.433 5.433 24 Si 0.793 3.207 25 H -0.186 1.186 26 H -0.189 1.189 27 H -0.181 1.181 28 C -0.235 4.235 29 C -0.123 4.123 30 C -0.154 4.154 31 C -0.132 4.132 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.262 0.738 38 H 0.269 0.731 39 H 0.194 0.806 40 H 0.163 0.837 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.129 0.871 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.973 4.060 -21.045 26.731 hybrid contribution 0.493 1.038 0.506 1.256 sum -15.481 5.099 -20.539 26.220 Atomic orbital electron populations 1.21930 0.89694 1.03799 1.05222 1.19159 0.98645 1.00352 0.82979 0.82304 1.29396 0.91841 0.92474 0.94286 1.81317 1.10621 1.10866 1.13806 1.21064 1.00304 0.95083 0.81600 1.44589 1.60650 1.29456 1.02541 1.16036 0.79670 0.82864 0.81355 1.90989 1.45846 1.26924 1.85994 1.42228 1.62992 1.24655 1.01748 1.17444 0.92987 0.98572 0.84979 1.21021 0.99603 1.01867 0.90593 1.21317 0.96956 0.96260 0.98904 1.18990 0.95794 0.99048 0.83892 1.84083 1.61966 1.49233 1.24428 1.18755 1.00352 0.93851 0.93532 1.20630 1.01003 0.95226 0.99691 1.20633 1.01061 1.00190 0.97174 1.17907 0.91998 0.91187 0.92433 1.19676 1.19033 1.18445 0.96116 0.90189 1.26754 0.93268 1.01083 0.95925 1.69973 1.23385 1.33238 1.16705 0.85357 0.79281 0.76873 0.79234 1.18578 1.18910 1.18103 1.20712 1.05090 0.96112 1.01603 1.19887 0.99576 1.00022 0.92846 1.21368 0.99542 1.01095 0.93382 1.21025 0.96889 0.99592 0.95724 0.90316 0.92384 0.87950 0.91737 0.91446 0.73839 0.73060 0.80644 0.83678 0.87522 0.88653 0.89787 0.87055 0.86080 0.87078 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 9.02 71.98 0.65 0.91 16 2 C 0.01 0.01 2.80 -12.60 -0.04 -0.02 16 3 H 0.16 -0.86 8.14 -2.39 -0.02 -0.88 16 4 C 0.24 2.58 14.65 89.44 1.31 3.89 16 5 N -0.49 -9.52 18.54 20.01 0.37 -9.15 16 6 C 0.15 1.03 5.02 86.38 0.43 1.47 16 7 N -0.71 -4.14 5.29 -478.51 -2.53 -6.67 16 8 C 0.70 11.68 8.39 179.06 1.50 13.18 16 9 O -0.62 -17.41 13.96 -4.01 -0.06 -17.46 16 10 N -0.67 -9.06 5.34 -317.06 -1.69 -10.75 16 11 C 0.16 3.51 6.25 38.12 0.24 3.75 16 12 C -0.11 -2.23 9.96 22.38 0.22 -2.00 16 13 C -0.12 -3.20 9.98 22.36 0.22 -2.98 16 14 C 0.07 2.37 4.21 22.53 0.09 2.47 16 15 O -0.28 -12.03 9.96 -32.90 -0.33 -12.36 16 16 C -0.02 -1.11 6.65 22.81 0.15 -0.95 16 17 C -0.15 -7.08 8.95 22.12 0.20 -6.89 16 18 C -0.17 -9.10 8.73 22.48 0.20 -8.91 16 19 C 0.07 3.66 5.58 -21.28 -0.12 3.54 16 20 C -0.50 -27.12 8.95 23.39 0.21 -26.91 16 21 H 0.08 4.14 8.01 -2.91 -0.02 4.11 16 22 C 0.05 2.39 4.81 85.23 0.41 2.80 16 23 N -0.81 -42.02 11.67 21.82 0.25 -41.76 16 24 Si 0.97 37.25 29.66 68.60 2.03 39.28 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 27 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 28 C -0.22 -10.79 9.74 22.48 0.22 -10.57 16 29 C -0.10 -4.90 9.92 22.11 0.22 -4.68 16 30 C -0.13 -4.79 9.28 22.36 0.21 -4.58 16 31 C -0.11 -3.40 8.67 22.38 0.19 -3.21 16 32 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.10 -0.63 7.18 -2.39 -0.02 -0.64 16 35 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 -1.41 7.67 -92.71 -0.71 -2.12 16 38 H 0.43 1.73 8.84 -92.71 -0.82 0.91 16 39 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.11 4.77 6.52 -2.91 -0.02 4.75 16 42 H 0.10 5.21 6.46 -2.91 -0.02 5.19 16 43 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 44 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 45 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 46 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 47 H 0.13 4.13 6.44 -2.91 -0.02 4.11 16 Total: -1.00 -80.30 407.72 4.09 -76.21 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.49 Total: 22.35 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 6.53 Total: -39.69 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -3.60 Total: -68.33 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.38 Total: -29.82 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -80.30 4.09 -76.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095410867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.474 kcal (2) G-P(sol) polarization free energy of solvation -80.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds