Wall clock time and date at job start Tue Mar 31 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47150 * 2 1 4 4 C 1.47198 * 109.47209 * 120.00359 * 2 1 3 5 5 N 2.60800 * 109.47165 * 120.00362 * 2 1 3 6 6 C 1.53006 * 109.47041 * 240.00300 * 2 1 3 7 7 N 1.46504 * 109.46813 * 64.99901 * 6 2 1 8 8 C 1.34778 * 119.99376 * 179.97438 * 7 6 2 9 9 O 1.21588 * 120.00192 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99635 * 179.97438 * 8 7 6 11 11 C 1.40105 * 119.99994 * 186.13294 * 10 8 7 12 12 C 1.38861 * 120.00862 * 206.09066 * 11 10 8 13 13 C 1.38069 * 119.98788 * 179.74523 * 12 11 10 14 14 C 1.38787 * 120.00798 * 0.55573 * 13 12 11 15 15 O 1.35906 * 119.98752 * 179.72473 * 14 13 12 16 16 C 1.35624 * 117.99842 * 255.39559 * 15 14 13 17 17 C 1.39366 * 119.81941 * 354.88301 * 16 15 14 18 18 C 1.36409 * 120.18011 * 179.72454 * 17 16 15 19 19 C 1.40845 * 119.81493 * 0.54732 * 18 17 16 20 20 C 1.41189 * 120.17727 * 179.70564 * 19 18 17 21 21 H 1.07997 * 119.99341 * 34.49565 * 20 19 18 22 22 C 1.39877 * 120.00002 * 214.49675 * 20 19 18 23 23 N 1.30884 * 119.99976 * 5.38302 * 22 20 19 24 24 Si 1.86795 * 119.99806 * 185.38192 * 22 20 19 25 25 H 1.48503 * 109.47322 * 59.99880 * 24 22 20 26 26 H 1.48496 * 109.47155 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47197 * 299.99928 * 24 22 20 28 28 C 1.40855 * 119.65344 * 359.72618 * 19 18 17 29 29 C 1.36409 * 119.81151 * 359.97438 * 28 19 18 30 30 C 1.38789 * 120.01802 * 359.69634 * 14 13 12 31 31 C 1.38063 * 120.00813 * 0.02562 * 30 14 13 32 32 H 1.08993 * 109.47126 * 59.99776 * 1 2 3 33 33 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47318 * 299.99745 * 1 2 3 35 35 H 1.08999 * 109.46779 * 304.99722 * 6 2 1 36 36 H 1.09002 * 109.46777 * 184.99885 * 6 2 1 37 37 H 0.96996 * 120.00503 * 0.02562 * 7 6 2 38 38 H 0.96997 * 120.00218 * 5.86534 * 10 8 7 39 39 H 1.08005 * 120.00592 * 0.02562 * 12 11 10 40 40 H 1.07997 * 119.99115 * 180.27728 * 13 12 11 41 41 H 1.08001 * 119.91297 * 359.97438 * 17 16 15 42 42 H 1.07997 * 120.09274 * 180.25565 * 18 17 16 43 43 H 0.96998 * 120.00017 * 180.02562 * 23 22 20 44 44 H 1.07990 * 120.09860 * 179.97438 * 28 19 18 45 45 H 1.08002 * 119.91044 * 179.97438 * 29 28 19 46 46 H 1.08001 * 119.99017 * 180.02562 * 30 14 13 47 47 H 1.07998 * 119.99942 * 179.97438 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0400 -0.7212 -1.2493 7 7 1.6524 0.0355 -2.4424 8 6 1.9964 -0.4129 -3.6660 9 8 2.6280 -1.4456 -3.7796 10 7 1.6394 0.2829 -4.7636 11 6 1.8831 -0.2455 -6.0381 12 6 2.0395 0.6052 -7.1244 13 6 2.2849 0.0842 -8.3792 14 6 2.3639 -1.2900 -8.5569 15 8 2.5999 -1.8026 -9.7933 16 6 1.5596 -2.3617 -10.4600 17 6 0.3231 -2.4925 -9.8305 18 6 -0.7298 -3.0486 -10.4961 19 6 -0.5615 -3.5016 -11.8190 20 6 -1.6444 -4.0840 -12.5129 21 1 -2.6495 -3.7274 -12.3423 22 6 -1.4156 -5.1229 -13.4212 23 7 -0.2144 -5.6263 -13.5506 24 14 -2.8243 -5.7917 -14.4495 25 1 -3.3879 -4.7016 -15.2858 26 1 -2.3234 -6.8797 -15.3272 27 1 -3.8816 -6.3251 -13.5534 28 6 0.6929 -3.3710 -12.4461 29 6 1.7342 -2.8070 -11.7689 30 6 2.2024 -2.1408 -7.4723 31 6 1.9627 -1.6203 -6.2162 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.6054 -1.7198 -1.2952 36 1 3.1263 -0.7994 -1.2056 37 1 1.1488 0.8596 -2.3518 38 1 1.2101 1.1478 -4.6712 39 1 1.9737 1.6744 -6.9869 40 1 2.4110 0.7459 -9.2233 41 1 0.1970 -2.1490 -8.8144 42 1 -1.6885 -3.1455 -10.0084 43 1 -0.0556 -6.3464 -14.1807 44 1 0.8301 -3.7162 -13.4601 45 1 2.6969 -2.7064 -12.2481 46 1 2.2644 -3.2100 -7.6110 47 1 1.8367 -2.2825 -5.3724 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095410868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:39 Heat of formation + Delta-G solvation = 20.418245 kcal Electronic energy + Delta-G solvation = -30074.547690 eV Core-core repulsion = 25802.068466 eV Total energy + Delta-G solvation = -4272.479224 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.01697 -39.89730 -38.47316 -37.72155 -36.58195 -35.82204 -34.61099 -33.30566 -32.94327 -30.90380 -29.94486 -29.18277 -28.57912 -27.10199 -25.03020 -24.02023 -23.03873 -22.44832 -21.40939 -20.90789 -20.55085 -19.26468 -17.92345 -17.77195 -17.68321 -17.30865 -16.39069 -15.85366 -15.71540 -15.39417 -15.18858 -15.09914 -14.85211 -14.17360 -14.08981 -13.94937 -13.76229 -13.54284 -13.40633 -13.21660 -13.21225 -12.96490 -12.78619 -12.48955 -12.43184 -12.19754 -12.06380 -11.94851 -11.76038 -11.71118 -11.43101 -11.12013 -10.95094 -10.76403 -10.50507 -10.32081 -9.91758 -9.81911 -9.65537 -9.35499 -9.11904 -8.83801 -7.84848 -7.66717 -6.93858 -6.64126 -4.30691 1.26844 1.49326 1.90052 2.18264 2.32388 2.75707 2.78008 2.93750 3.10301 3.12896 3.19146 3.23158 3.69980 3.78395 3.93955 3.99218 4.13618 4.35037 4.36189 4.68025 4.90805 4.93489 4.96845 5.05112 5.06701 5.24393 5.42152 5.44309 5.47979 5.56163 5.63026 5.80326 5.96893 6.08288 6.12592 6.18607 6.21696 6.47522 6.57519 6.70547 6.72950 6.92525 6.94724 7.01192 7.11440 7.23455 7.48282 7.51744 7.57415 7.75311 8.01121 8.11465 8.21243 8.50550 8.67532 8.91928 8.97647 10.32532 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.001539 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.222182 B =18190.157658 C =19168.547786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.004 4.004 3 H 0.122 0.878 4 C 0.210 3.790 5 N -0.420 5.420 6 C 0.145 3.855 7 N -0.742 5.742 8 C 0.704 3.296 9 O -0.565 6.565 10 N -0.679 5.679 11 C 0.146 3.854 12 C -0.136 4.136 13 C -0.111 4.111 14 C 0.101 3.899 15 O -0.274 6.274 16 C -0.007 4.007 17 C -0.160 4.160 18 C -0.187 4.187 19 C 0.091 3.909 20 C -0.468 4.468 21 H 0.075 0.925 22 C 0.072 3.928 23 N -0.814 5.814 24 Si 0.912 3.088 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.267 1.267 28 C -0.122 4.122 29 C -0.118 4.118 30 C -0.117 4.117 31 C -0.113 4.113 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.399 0.601 38 H 0.406 0.594 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.279 0.721 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.132 0.868 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 15.830 20.754 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 H 0.140 0.860 4 C -0.109 4.109 5 N -0.095 5.095 6 C 0.019 3.981 7 N -0.399 5.399 8 C 0.405 3.595 9 O -0.440 6.440 10 N -0.326 5.326 11 C 0.052 3.948 12 C -0.157 4.157 13 C -0.130 4.130 14 C 0.057 3.943 15 O -0.188 6.188 16 C -0.048 4.048 17 C -0.179 4.179 18 C -0.207 4.207 19 C 0.089 3.911 20 C -0.499 4.499 21 H 0.093 0.907 22 C -0.143 4.143 23 N -0.441 5.441 24 Si 0.737 3.263 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.192 1.192 28 C -0.141 4.141 29 C -0.137 4.137 30 C -0.136 4.136 31 C -0.133 4.133 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.241 0.759 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.144 0.856 45 H 0.118 0.882 46 H 0.150 0.850 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.452 13.863 21.918 26.050 hybrid contribution -1.280 0.608 -0.535 1.515 sum 1.171 14.471 21.384 25.846 Atomic orbital electron populations 1.21886 0.91157 1.04111 1.03635 1.18991 0.97803 0.99543 0.86222 0.86009 1.28694 0.93706 0.94025 0.94492 1.81294 1.08269 1.08584 1.11337 1.21124 1.01058 0.95182 0.80719 1.44927 1.61633 1.29037 1.04324 1.15813 0.79871 0.83652 0.80176 1.90978 1.43579 1.24322 1.85137 1.42494 1.63610 1.22999 1.03472 1.17442 1.01892 0.92629 0.82875 1.20524 1.04704 0.98854 0.91625 1.21031 1.00322 0.94441 0.97240 1.18694 0.99301 0.91301 0.84994 1.84113 1.34603 1.73475 1.26576 1.18756 0.86166 1.06750 0.93141 1.20510 0.93431 1.05124 0.98806 1.20693 0.97363 1.07479 0.95126 1.17636 0.93282 0.89851 0.90318 1.19377 0.94611 1.15646 1.20310 0.90719 1.25818 0.96597 0.96033 0.95824 1.69765 1.21677 1.21755 1.30898 0.86313 0.81408 0.78791 0.79786 1.19057 1.20454 1.19216 1.20983 0.92874 1.00243 1.00037 1.19864 0.99133 1.03022 0.91681 1.21497 0.99410 1.00812 0.91880 1.21157 1.00912 0.93592 0.97637 0.90324 0.91101 0.91134 0.90031 0.90262 0.76588 0.75908 0.85505 0.84962 0.88372 0.88541 0.91025 0.85607 0.88215 0.85011 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.13 9.02 37.16 0.34 0.21 16 2 C 0.00 -0.01 2.80 -93.40 -0.26 -0.27 16 3 H 0.12 -0.10 8.14 -51.93 -0.42 -0.52 16 4 C 0.21 1.20 14.65 -20.76 -0.30 0.89 16 5 N -0.42 -3.94 18.54 42.15 0.78 -3.16 16 6 C 0.14 0.60 5.02 -4.04 -0.02 0.57 16 7 N -0.74 -3.00 5.29 -65.22 -0.34 -3.34 16 8 C 0.70 6.28 8.35 -86.92 -0.73 5.55 16 9 O -0.56 -7.70 13.62 5.29 0.07 -7.63 16 10 N -0.68 -5.37 5.38 -14.19 -0.08 -5.44 16 11 C 0.15 1.73 6.41 -83.61 -0.54 1.19 16 12 C -0.14 -1.54 9.94 -39.41 -0.39 -1.93 16 13 C -0.11 -1.60 9.98 -39.44 -0.39 -1.99 16 14 C 0.10 1.77 4.66 -39.17 -0.18 1.59 16 15 O -0.27 -5.70 9.97 -2.78 -0.03 -5.73 16 16 C -0.01 -0.17 6.65 -38.74 -0.26 -0.42 16 17 C -0.16 -3.62 8.86 -39.82 -0.35 -3.97 16 18 C -0.19 -4.56 9.74 -39.26 -0.38 -4.94 16 19 C 0.09 2.41 5.50 -106.80 -0.59 1.82 16 20 C -0.47 -12.36 9.03 -37.85 -0.34 -12.70 16 21 H 0.07 1.89 7.85 -52.49 -0.41 1.47 16 22 C 0.07 1.82 5.31 -17.34 -0.09 1.73 16 23 N -0.81 -21.20 10.96 55.54 0.61 -20.60 16 24 Si 0.91 18.85 29.56 -169.99 -5.03 13.83 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 28 C -0.12 -3.14 8.57 -39.25 -0.34 -3.47 16 29 C -0.12 -2.81 9.92 -39.82 -0.40 -3.21 16 30 C -0.12 -1.93 8.39 -39.44 -0.33 -2.27 16 31 C -0.11 -1.64 8.69 -39.42 -0.34 -1.98 16 32 H 0.08 -0.04 7.18 -51.93 -0.37 -0.42 16 33 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.40 0.14 7.68 -40.82 -0.31 -0.17 16 38 H 0.41 1.56 8.81 -40.82 -0.36 1.20 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 2.02 5.97 -52.49 -0.31 1.71 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 44 H 0.13 3.32 6.47 -52.49 -0.34 2.98 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 47 H 0.15 2.17 5.91 -52.49 -0.31 1.86 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -34.24 405.28 -9.59 -43.83 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.78 Total: 5.71 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -5.90 Total: -23.59 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.97 Total: -32.54 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.04 Total: -13.35 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.24 -9.59 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095410868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.249 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds