Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47150 * 2 1 4 4 C 1.47198 * 109.47209 * 120.00359 * 2 1 3 5 5 N 2.60800 * 109.47165 * 120.00362 * 2 1 3 6 6 C 1.53006 * 109.47041 * 240.00300 * 2 1 3 7 7 N 1.46504 * 109.46813 * 64.99901 * 6 2 1 8 8 C 1.34778 * 119.99376 * 179.97438 * 7 6 2 9 9 O 1.21588 * 120.00192 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99635 * 179.97438 * 8 7 6 11 11 C 1.40105 * 119.99994 * 186.13294 * 10 8 7 12 12 C 1.38861 * 120.00862 * 206.09066 * 11 10 8 13 13 C 1.38069 * 119.98788 * 179.74523 * 12 11 10 14 14 C 1.38787 * 120.00798 * 0.55573 * 13 12 11 15 15 O 1.35906 * 119.98752 * 179.72473 * 14 13 12 16 16 C 1.35624 * 117.99842 * 255.39559 * 15 14 13 17 17 C 1.39366 * 119.81941 * 354.88301 * 16 15 14 18 18 C 1.36409 * 120.18011 * 179.72454 * 17 16 15 19 19 C 1.40845 * 119.81493 * 0.54732 * 18 17 16 20 20 C 1.41189 * 120.17727 * 179.70564 * 19 18 17 21 21 H 1.07997 * 119.99341 * 34.49565 * 20 19 18 22 22 C 1.39877 * 120.00002 * 214.49675 * 20 19 18 23 23 N 1.30884 * 119.99976 * 5.38302 * 22 20 19 24 24 Si 1.86795 * 119.99806 * 185.38192 * 22 20 19 25 25 H 1.48503 * 109.47322 * 59.99880 * 24 22 20 26 26 H 1.48496 * 109.47155 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47197 * 299.99928 * 24 22 20 28 28 C 1.40855 * 119.65344 * 359.72618 * 19 18 17 29 29 C 1.36409 * 119.81151 * 359.97438 * 28 19 18 30 30 C 1.38789 * 120.01802 * 359.69634 * 14 13 12 31 31 C 1.38063 * 120.00813 * 0.02562 * 30 14 13 32 32 H 1.08993 * 109.47126 * 59.99776 * 1 2 3 33 33 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47318 * 299.99745 * 1 2 3 35 35 H 1.08999 * 109.46779 * 304.99722 * 6 2 1 36 36 H 1.09002 * 109.46777 * 184.99885 * 6 2 1 37 37 H 0.96996 * 120.00503 * 0.02562 * 7 6 2 38 38 H 0.96997 * 120.00218 * 5.86534 * 10 8 7 39 39 H 1.08005 * 120.00592 * 0.02562 * 12 11 10 40 40 H 1.07997 * 119.99115 * 180.27728 * 13 12 11 41 41 H 1.08001 * 119.91297 * 359.97438 * 17 16 15 42 42 H 1.07997 * 120.09274 * 180.25565 * 18 17 16 43 43 H 0.96998 * 120.00017 * 180.02562 * 23 22 20 44 44 H 1.07990 * 120.09860 * 179.97438 * 28 19 18 45 45 H 1.08002 * 119.91044 * 179.97438 * 29 28 19 46 46 H 1.08001 * 119.99017 * 180.02562 * 30 14 13 47 47 H 1.07998 * 119.99942 * 179.97438 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0400 -0.7212 -1.2493 7 7 1.6524 0.0355 -2.4424 8 6 1.9964 -0.4129 -3.6660 9 8 2.6280 -1.4456 -3.7796 10 7 1.6394 0.2829 -4.7636 11 6 1.8831 -0.2455 -6.0381 12 6 2.0395 0.6052 -7.1244 13 6 2.2849 0.0842 -8.3792 14 6 2.3639 -1.2900 -8.5569 15 8 2.5999 -1.8026 -9.7933 16 6 1.5596 -2.3617 -10.4600 17 6 0.3231 -2.4925 -9.8305 18 6 -0.7298 -3.0486 -10.4961 19 6 -0.5615 -3.5016 -11.8190 20 6 -1.6444 -4.0840 -12.5129 21 1 -2.6495 -3.7274 -12.3423 22 6 -1.4156 -5.1229 -13.4212 23 7 -0.2144 -5.6263 -13.5506 24 14 -2.8243 -5.7917 -14.4495 25 1 -3.3879 -4.7016 -15.2858 26 1 -2.3234 -6.8797 -15.3272 27 1 -3.8816 -6.3251 -13.5534 28 6 0.6929 -3.3710 -12.4461 29 6 1.7342 -2.8070 -11.7689 30 6 2.2024 -2.1408 -7.4723 31 6 1.9627 -1.6203 -6.2162 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.6054 -1.7198 -1.2952 36 1 3.1263 -0.7994 -1.2056 37 1 1.1488 0.8596 -2.3518 38 1 1.2101 1.1478 -4.6712 39 1 1.9737 1.6744 -6.9869 40 1 2.4110 0.7459 -9.2233 41 1 0.1970 -2.1490 -8.8144 42 1 -1.6885 -3.1455 -10.0084 43 1 -0.0556 -6.3464 -14.1807 44 1 0.8301 -3.7162 -13.4601 45 1 2.6969 -2.7064 -12.2481 46 1 2.2644 -3.2100 -7.6110 47 1 1.8367 -2.2825 -5.3724 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095410868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -0.573197 kcal Electronic energy + Delta-G solvation = -30075.457947 eV Core-core repulsion = 25802.068466 eV Total energy + Delta-G solvation = -4273.389481 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.90282 -41.19976 -39.46090 -38.63794 -38.05228 -36.43848 -35.60040 -35.10458 -33.43380 -32.02710 -31.71419 -31.00391 -29.70828 -27.52881 -26.78938 -24.72268 -24.01861 -23.61428 -22.79375 -22.33478 -21.84350 -19.92325 -19.32178 -19.21702 -18.73320 -18.13668 -17.19016 -17.02875 -16.85132 -16.68321 -16.33468 -15.81016 -15.72192 -15.55212 -15.30751 -14.84582 -14.65207 -14.52969 -14.50083 -14.34652 -14.05137 -14.03154 -13.98340 -13.82536 -13.55163 -13.50220 -13.28454 -13.06769 -12.75564 -12.64946 -12.48653 -12.32625 -12.25083 -11.96276 -11.88530 -11.65374 -11.48432 -11.17632 -11.14287 -10.90809 -10.18230 -9.95173 -9.57497 -8.96342 -8.74484 -8.51619 -6.27946 0.12755 0.39124 0.92959 1.02217 1.33110 1.41831 1.53090 1.53460 1.74557 1.80741 1.98538 2.26408 2.51437 2.78679 2.83070 3.04694 3.32020 3.65396 3.67119 3.91927 3.93442 4.00853 4.24500 4.28795 4.34028 4.35025 4.48175 4.52488 4.69618 4.72408 4.78694 4.94073 4.97483 5.04113 5.07051 5.10280 5.20676 5.23172 5.29821 5.33135 5.39925 5.44608 5.55789 5.60973 5.66723 5.86597 5.94546 5.99025 6.07906 6.28933 6.51977 6.60971 6.88674 6.98271 7.00648 7.13123 7.47484 8.46677 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.001539 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.222182 B =18190.157658 C =19168.547786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.011 3.989 3 H 0.162 0.838 4 C 0.238 3.762 5 N -0.490 5.490 6 C 0.145 3.855 7 N -0.714 5.714 8 C 0.700 3.300 9 O -0.615 6.615 10 N -0.662 5.662 11 C 0.164 3.836 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.055 3.945 15 O -0.282 6.282 16 C 0.004 3.996 17 C -0.156 4.156 18 C -0.195 4.195 19 C 0.058 3.942 20 C -0.502 4.502 21 H 0.076 0.924 22 C 0.029 3.971 23 N -0.847 5.847 24 Si 0.986 3.014 25 H -0.259 1.259 26 H -0.272 1.272 27 H -0.262 1.262 28 C -0.136 4.136 29 C -0.130 4.130 30 C -0.130 4.130 31 C -0.125 4.125 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.423 0.577 38 H 0.431 0.569 39 H 0.177 0.823 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.284 0.716 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 19.215 22.232 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 H 0.179 0.821 4 C -0.080 4.080 5 N -0.166 5.166 6 C 0.019 3.981 7 N -0.372 5.372 8 C 0.400 3.600 9 O -0.494 6.494 10 N -0.311 5.311 11 C 0.068 3.932 12 C -0.138 4.138 13 C -0.128 4.128 14 C 0.012 3.988 15 O -0.196 6.196 16 C -0.038 4.038 17 C -0.175 4.175 18 C -0.214 4.214 19 C 0.057 3.943 20 C -0.533 4.533 21 H 0.094 0.906 22 C -0.182 4.182 23 N -0.476 5.476 24 Si 0.807 3.193 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.187 1.187 28 C -0.156 4.156 29 C -0.149 4.149 30 C -0.149 4.149 31 C -0.145 4.145 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.262 0.738 38 H 0.271 0.729 39 H 0.194 0.806 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.191 17.335 23.462 29.195 hybrid contribution -0.789 -0.286 -0.738 1.118 sum 0.402 17.048 22.724 28.411 Atomic orbital electron populations 1.21937 0.89940 1.03702 1.05207 1.19159 0.98432 1.00456 0.82999 0.82050 1.29402 0.91836 0.92474 0.94293 1.81321 1.10674 1.10838 1.13815 1.21069 1.00427 0.95010 0.81581 1.44614 1.60496 1.29460 1.02587 1.16041 0.79529 0.83069 0.81347 1.90968 1.45837 1.26647 1.85950 1.42278 1.63234 1.23798 1.01777 1.17505 0.99334 0.91651 0.84750 1.20923 1.02065 1.01064 0.89749 1.21260 0.99427 0.92967 0.99139 1.19017 1.03404 0.92875 0.83517 1.84130 1.33920 1.73404 1.28181 1.18871 0.86888 1.05119 0.92908 1.20668 0.92861 1.04402 0.99563 1.20887 0.98377 1.07453 0.94723 1.17967 0.93854 0.91061 0.91465 1.19641 0.94725 1.16924 1.22019 0.90567 1.26694 0.99273 0.95781 0.96481 1.69849 1.23673 1.22367 1.31663 0.85198 0.77888 0.78233 0.78002 1.18325 1.19627 1.18672 1.20895 0.93583 1.01389 0.99739 1.20024 0.99333 1.03034 0.92479 1.21366 1.00763 0.99948 0.92845 1.21135 1.01767 0.95225 0.96390 0.87997 0.92596 0.90314 0.91634 0.91426 0.73797 0.72945 0.80568 0.83726 0.86307 0.87540 0.90534 0.87132 0.86805 0.87025 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 9.02 71.98 0.65 0.92 16 2 C 0.01 0.00 2.80 -12.60 -0.04 -0.03 16 3 H 0.16 -1.11 8.14 -2.39 -0.02 -1.13 16 4 C 0.24 2.41 14.65 89.44 1.31 3.72 16 5 N -0.49 -9.23 18.54 20.01 0.37 -8.86 16 6 C 0.15 0.87 5.02 86.38 0.43 1.30 16 7 N -0.71 -3.11 5.29 -478.51 -2.53 -5.64 16 8 C 0.70 10.46 8.35 179.05 1.49 11.96 16 9 O -0.61 -16.19 13.62 -3.99 -0.05 -16.24 16 10 N -0.66 -7.70 5.38 -317.06 -1.70 -9.40 16 11 C 0.16 3.37 6.41 38.12 0.24 3.61 16 12 C -0.12 -2.15 9.94 22.38 0.22 -1.93 16 13 C -0.11 -2.86 9.98 22.36 0.22 -2.63 16 14 C 0.05 1.91 4.66 22.53 0.11 2.01 16 15 O -0.28 -11.89 9.97 -32.88 -0.33 -12.22 16 16 C 0.00 0.18 6.65 22.81 0.15 0.33 16 17 C -0.16 -7.15 8.86 22.11 0.20 -6.95 16 18 C -0.19 -9.70 9.74 22.48 0.22 -9.49 16 19 C 0.06 3.20 5.50 -21.28 -0.12 3.09 16 20 C -0.50 -27.33 9.03 23.39 0.21 -27.12 16 21 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 22 C 0.03 1.51 5.31 85.23 0.45 1.96 16 23 N -0.85 -45.60 10.96 21.82 0.24 -45.36 16 24 Si 0.99 39.04 29.56 68.60 2.03 41.07 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.14 -7.33 8.57 22.48 0.19 -7.14 16 29 C -0.13 -6.38 9.92 22.11 0.22 -6.16 16 30 C -0.13 -4.37 8.39 22.36 0.19 -4.18 16 31 C -0.12 -3.54 8.69 22.38 0.19 -3.34 16 32 H 0.10 -0.62 7.18 -2.39 -0.02 -0.63 16 33 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 34 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.42 -2.00 7.68 -92.71 -0.71 -2.71 16 38 H 0.43 0.79 8.81 -92.71 -0.82 -0.03 16 39 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.12 4.87 5.97 -2.91 -0.02 4.85 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 44 H 0.11 6.17 6.47 -2.92 -0.02 6.15 16 45 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 46 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 47 H 0.14 4.13 5.91 -2.91 -0.02 4.12 16 Total: -1.00 -81.17 405.28 4.09 -77.08 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.48 Total: 19.66 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 6.55 Total: -40.09 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -3.62 Total: -69.26 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.38 Total: -28.46 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -81.17 4.09 -77.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095410868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.506 kcal (2) G-P(sol) polarization free energy of solvation -81.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds