Wall clock time and date at job start Tue Mar 31 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34250 * 125.02822 * 2 1 4 4 C 1.46491 * 107.01918 * 179.97438 * 3 2 1 5 5 C 1.39653 * 133.93066 * 180.02562 * 4 3 2 6 6 C 1.38180 * 119.59014 * 179.97438 * 5 4 3 7 7 N 1.40182 * 119.87412 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00043 * 324.89189 * 7 6 5 9 9 O 1.21584 * 119.99888 * 4.58339 * 8 7 6 10 10 N 1.34774 * 119.99865 * 184.57567 * 8 7 6 11 11 C 1.46505 * 120.00003 * 0.02562 * 10 8 7 12 12 C 1.50701 * 109.46749 * 90.00204 * 11 10 8 13 13 H 1.07993 * 120.00242 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99626 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99906 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00454 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47183 * 89.99766 * 16 14 12 18 18 H 1.48496 * 109.47504 * 210.00304 * 16 14 12 19 19 H 1.48502 * 109.46752 * 329.99981 * 16 14 12 20 20 C 1.46505 * 120.00236 * 180.02562 * 10 8 7 21 21 C 1.50697 * 109.47143 * 89.99574 * 20 10 8 22 22 C 1.38237 * 119.61457 * 94.73223 * 21 20 10 23 23 C 1.38629 * 119.15889 * 179.75209 * 22 21 20 24 24 C 1.38667 * 118.42006 * 0.50964 * 23 22 21 25 25 C 1.38189 * 119.16657 * 359.73222 * 24 23 22 26 26 N 1.31857 * 119.62338 * 275.00360 * 21 20 10 27 27 C 1.39392 * 120.24182 * 0.02562 * 6 5 4 28 28 C 1.37645 * 120.60509 * 0.25359 * 27 6 5 29 29 C 1.39118 * 120.01354 * 359.45025 * 28 27 6 30 30 N 1.36792 * 125.03291 * 179.97438 * 2 1 3 31 31 H 0.97006 * 125.07658 * 0.03939 * 30 2 1 32 32 H 1.08997 * 109.47125 * 89.99765 * 1 2 3 33 33 H 1.08997 * 109.46671 * 209.99476 * 1 2 3 34 34 H 1.08994 * 109.46935 * 329.99566 * 1 2 3 35 35 H 1.07995 * 126.48792 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.20147 * 359.97438 * 5 4 3 37 37 H 0.96999 * 119.99767 * 144.90164 * 7 6 5 38 38 H 1.09004 * 109.46899 * 209.99645 * 11 10 8 39 39 H 1.08992 * 109.47177 * 329.99872 * 11 10 8 40 40 H 0.97002 * 120.00414 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.47068 * 210.00080 * 20 10 8 42 42 H 1.08998 * 109.46573 * 330.00107 * 20 10 8 43 43 H 1.08003 * 120.41679 * 359.97438 * 22 21 20 44 44 H 1.07994 * 120.78821 * 180.26143 * 23 22 21 45 45 H 1.08001 * 120.41878 * 179.70485 * 24 23 22 46 46 H 1.07997 * 119.61861 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.69406 * 179.97438 * 27 6 5 48 48 H 1.07997 * 119.98940 * 179.72486 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0993 0.0000 4 6 3.6708 0.6464 0.0006 5 6 4.9031 1.3034 0.0014 6 6 6.0705 0.5640 0.0024 7 7 7.3108 1.2173 0.0036 8 6 7.4627 2.3762 -0.6673 9 8 6.5046 2.8981 -1.2039 10 7 8.6766 2.9567 -0.7433 11 6 9.8312 2.3277 -0.0970 12 6 10.4990 1.3873 -1.0669 13 1 10.1029 1.2696 -2.0647 14 6 11.6158 0.6771 -0.6804 15 7 12.1984 -0.1439 -1.5266 16 14 12.3015 0.8811 1.0452 17 1 11.6645 -0.1081 1.9511 18 1 13.7697 0.6593 1.0240 19 1 12.0154 2.2545 1.5323 20 6 8.8417 4.2169 -1.4721 21 6 8.6262 5.3737 -0.5307 22 6 9.7131 5.9625 0.0880 23 6 9.5045 7.0294 0.9483 24 6 8.2037 7.4591 1.1634 25 6 7.1665 6.8179 0.5133 26 7 7.4027 5.8090 -0.3024 27 6 6.0192 -0.8290 0.0021 28 6 4.8096 -1.4857 -0.0044 29 6 3.6232 -0.7591 0.0008 30 7 2.2923 -1.1201 0.0005 31 1 1.9623 -2.0323 0.0004 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3632 -0.8900 0.5137 34 1 -0.3633 0.8899 0.5139 35 1 1.9352 2.1236 0.0004 36 1 4.9435 2.3826 0.0011 37 1 8.0597 0.8351 0.4873 38 1 10.5398 3.0971 0.2095 39 1 9.4984 1.7705 0.7787 40 1 12.9844 -0.6433 -1.2548 41 1 9.8487 4.2679 -1.8860 42 1 8.1133 4.2665 -2.2814 43 1 10.7125 5.5983 -0.0993 44 1 10.3349 7.5117 1.4423 45 1 8.0038 8.2843 1.8308 46 1 6.1506 7.1464 0.6758 47 1 6.9371 -1.3982 0.0025 48 1 4.7815 -2.5653 -0.0090 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095416105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:02 Heat of formation + Delta-G solvation = 60.194415 kcal Electronic energy + Delta-G solvation = -31933.428160 eV Core-core repulsion = 27760.392423 eV Total energy + Delta-G solvation = -4173.035738 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.25179 -41.51876 -40.77487 -38.35473 -36.81880 -35.20058 -34.61614 -33.36409 -32.95937 -32.59502 -31.67482 -30.02202 -29.51140 -27.84670 -27.05793 -24.69735 -24.22284 -23.68377 -22.96614 -22.35487 -21.30836 -20.63047 -19.27464 -19.09963 -18.51932 -18.14174 -17.64346 -17.07416 -16.74878 -16.64493 -16.23784 -16.19478 -15.70830 -15.60460 -15.21540 -15.15962 -14.74522 -14.55837 -14.34408 -14.24563 -14.07059 -13.97007 -13.82697 -13.73599 -13.59140 -13.40608 -13.21554 -12.81763 -12.74325 -12.65482 -12.55593 -12.41420 -12.09668 -11.94438 -11.70732 -11.02457 -10.80075 -10.77192 -10.74665 -10.49766 -10.31702 -9.95926 -9.48822 -8.75629 -8.39209 -8.28860 -6.37580 0.14026 0.19753 0.43729 0.58524 1.40488 1.41922 1.51333 1.76794 1.78577 2.21200 2.25418 2.34232 2.86062 2.98314 3.03920 3.14000 3.42144 3.78660 3.85407 3.93396 4.04628 4.19768 4.20045 4.28482 4.35891 4.44160 4.47366 4.53710 4.57057 4.59186 4.64692 4.72408 4.79791 4.81178 4.81865 4.88808 5.05453 5.14628 5.15840 5.24277 5.29186 5.31860 5.38864 5.42945 5.56631 5.66378 5.84066 5.84875 5.92227 6.05145 6.24415 6.27716 6.67956 6.78245 6.96742 7.18687 7.28520 7.64827 8.87344 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.007591 B = 0.003377 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.655304 B = 8288.583383 C =11319.530648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.098 3.902 3 C -0.243 4.243 4 C -0.111 4.111 5 C -0.101 4.101 6 C 0.126 3.874 7 N -0.680 5.680 8 C 0.703 3.297 9 O -0.604 6.604 10 N -0.603 5.603 11 C 0.223 3.777 12 C -0.540 4.540 13 H 0.029 0.971 14 C 0.024 3.976 15 N -0.939 5.939 16 Si 0.939 3.061 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.238 1.238 20 C 0.186 3.814 21 C 0.093 3.907 22 C -0.165 4.165 23 C -0.077 4.077 24 C -0.165 4.165 25 C 0.076 3.924 26 N -0.498 5.498 27 C -0.132 4.132 28 C -0.100 4.100 29 C 0.067 3.933 30 N -0.582 5.582 31 H 0.429 0.571 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.412 0.588 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.269 0.731 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.146 0.854 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.168 0.832 47 H 0.138 0.862 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.033 5.130 10.037 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.268 4.268 4 C -0.116 4.116 5 C -0.123 4.123 6 C 0.031 3.969 7 N -0.329 5.329 8 C 0.405 3.595 9 O -0.483 6.483 10 N -0.337 5.337 11 C 0.101 3.899 12 C -0.578 4.578 13 H 0.047 0.953 14 C -0.176 4.176 15 N -0.578 5.578 16 Si 0.761 3.239 17 H -0.187 1.187 18 H -0.210 1.210 19 H -0.161 1.161 20 C 0.061 3.939 21 C -0.045 4.045 22 C -0.186 4.186 23 C -0.102 4.102 24 C -0.184 4.184 25 C -0.081 4.081 26 N -0.208 5.208 27 C -0.154 4.154 28 C -0.121 4.121 29 C -0.040 4.040 30 N -0.188 5.188 31 H 0.269 0.731 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.186 0.814 45 H 0.187 0.813 46 H 0.185 0.815 47 H 0.156 0.844 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.256 4.880 9.173 20.143 hybrid contribution 1.951 -0.327 0.609 2.070 sum -15.305 4.553 9.782 18.726 Atomic orbital electron populations 1.20607 0.84335 1.05207 1.04373 1.20851 0.95072 0.84902 1.00278 1.21636 0.89776 0.99064 1.16337 1.19350 0.93732 0.93158 1.05361 1.20479 0.90117 0.99601 1.02063 1.17518 0.84111 0.91634 1.03673 1.42702 1.12590 1.23764 1.53808 1.15957 0.83580 0.80737 0.79255 1.90838 1.39174 1.65401 1.52932 1.47004 1.06901 1.23246 1.56560 1.19562 0.84465 0.93512 0.92368 1.21451 1.12249 1.24662 0.99450 0.95275 1.25754 0.96286 0.93833 1.01685 1.70055 1.21830 1.28060 1.37892 0.85849 0.77872 0.80825 0.79340 1.18748 1.20993 1.16112 1.20038 1.02780 0.79025 0.92026 1.21644 0.89224 0.96156 0.97465 1.22254 1.00265 0.97794 0.98266 1.21987 0.98583 0.94439 0.95232 1.22517 0.93074 1.01912 1.00911 1.23238 1.01209 0.91271 0.92406 1.67538 1.24177 1.12746 1.16309 1.20772 0.98924 0.91555 1.04127 1.20001 0.88009 1.00237 1.03809 1.18294 0.85848 0.93486 1.06405 1.41663 1.02754 1.08949 1.65402 0.73082 0.89222 0.89186 0.88700 0.83587 0.87043 0.74968 0.92912 0.94972 0.92209 0.87780 0.91069 0.83669 0.81414 0.81276 0.81455 0.84378 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.39 71.24 0.74 -0.19 16 2 C 0.10 2.04 7.08 40.88 0.29 2.33 16 3 C -0.24 -6.93 10.95 23.51 0.26 -6.67 16 4 C -0.11 -3.87 6.37 -20.20 -0.13 -4.00 16 5 C -0.10 -4.12 8.74 22.60 0.20 -3.92 16 6 C 0.13 5.04 6.30 38.07 0.24 5.28 16 7 N -0.68 -28.92 5.22 -317.11 -1.66 -30.57 16 8 C 0.70 32.85 8.12 179.06 1.45 34.30 16 9 O -0.60 -30.86 13.35 -3.98 -0.05 -30.91 16 10 N -0.60 -26.52 2.44 -848.57 -2.07 -28.59 16 11 C 0.22 9.76 4.04 85.63 0.35 10.11 16 12 C -0.54 -28.69 9.94 25.60 0.25 -28.44 16 13 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 14 C 0.02 1.27 5.47 84.65 0.46 1.73 16 15 N -0.94 -55.14 13.96 21.45 0.30 -54.84 16 16 Si 0.94 38.99 27.47 68.60 1.88 40.87 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.24 -8.82 6.54 99.48 0.65 -8.17 16 20 C 0.19 7.40 5.71 85.63 0.49 7.89 16 21 C 0.09 3.30 6.36 42.55 0.27 3.57 16 22 C -0.17 -4.64 9.72 22.36 0.22 -4.43 16 23 C -0.08 -1.64 10.18 22.47 0.23 -1.41 16 24 C -0.16 -3.40 10.11 22.36 0.23 -3.18 16 25 C 0.08 2.09 11.18 84.67 0.95 3.04 16 26 N -0.50 -18.21 10.27 -183.88 -1.89 -20.10 16 27 C -0.13 -4.43 9.93 22.41 0.22 -4.21 16 28 C -0.10 -2.77 10.06 22.34 0.22 -2.54 16 29 C 0.07 1.93 7.27 38.99 0.28 2.22 16 30 N -0.58 -12.03 6.08 -175.80 -1.07 -13.10 16 31 H 0.43 5.47 8.96 -92.70 -0.83 4.64 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.11 5.14 6.21 -2.91 -0.02 5.13 16 37 H 0.41 16.64 6.52 -92.71 -0.60 16.04 16 38 H 0.05 2.15 7.13 -2.38 -0.02 2.14 16 39 H 0.03 1.35 5.73 -2.39 -0.01 1.33 16 40 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.10 3.84 7.97 -2.39 -0.02 3.82 16 42 H 0.07 3.10 7.42 -2.39 -0.02 3.08 16 43 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 45 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 47 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 48 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -80.09 404.60 2.20 -77.90 By element: Atomic # 1 Polarization: 48.34 SS G_CDS: -0.47 Total: 47.87 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 7.22 Total: 11.48 kcal Atomic # 7 Polarization: -140.82 SS G_CDS: -6.38 Total: -147.20 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.88 Total: 40.87 kcal Total: -80.09 2.20 -77.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095416105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.091 kcal (2) G-P(sol) polarization free energy of solvation -80.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds