Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53001 * 109.47018 * 240.00123 * 2 1 3 5 5 C 1.50703 * 109.47132 * 59.99789 * 4 2 1 6 6 H 1.08003 * 120.00121 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00318 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00222 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47291 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47012 * 120.00692 * 9 7 5 12 12 H 1.48501 * 109.47419 * 240.00517 * 9 7 5 13 13 C 1.52993 * 109.47570 * 120.00052 * 2 1 3 14 14 N 1.46501 * 109.47164 * 300.00240 * 13 2 1 15 15 C 1.39674 * 120.00008 * 179.97438 * 14 13 2 16 16 C 1.38911 * 120.07434 * 180.02562 * 15 14 13 17 17 C 1.38103 * 119.92590 * 180.02562 * 16 15 14 18 18 C 1.38291 * 120.07378 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.92478 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47512 * 89.99320 * 19 18 17 21 21 N 1.30806 * 126.24581 * 269.95861 * 20 19 18 22 22 N 1.28684 * 110.28602 * 180.02562 * 21 20 19 23 23 C 1.32298 * 109.48477 * 0.02562 * 22 21 20 24 24 C 1.40827 * 133.46629 * 179.97438 * 23 22 21 25 25 C 1.36014 * 119.22606 * 180.25334 * 24 23 22 26 26 C 1.40546 * 119.74959 * 359.48767 * 25 24 23 27 27 C 1.34955 * 120.36394 * 0.53667 * 26 25 24 28 28 N 1.36066 * 126.24464 * 89.99883 * 20 19 18 29 29 C 1.38285 * 120.14894 * 0.26569 * 18 17 16 30 30 C 1.38106 * 120.07218 * 359.45855 * 29 18 17 31 31 H 1.09002 * 109.47026 * 299.99464 * 1 2 3 32 32 H 1.08996 * 109.47506 * 60.00332 * 1 2 3 33 33 H 1.09007 * 109.46580 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47109 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47098 * 300.00503 * 3 2 1 36 36 H 1.08997 * 109.46857 * 59.99910 * 3 2 1 37 37 H 1.08999 * 109.47182 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.47194 * 300.00008 * 4 2 1 39 39 H 0.96999 * 120.00125 * 180.02562 * 8 7 5 40 40 H 1.08999 * 109.47295 * 179.97438 * 13 2 1 41 41 H 1.09007 * 109.46814 * 60.00252 * 13 2 1 42 42 H 0.96991 * 119.99980 * 359.97438 * 14 13 2 43 43 H 1.07998 * 120.03811 * 0.04091 * 16 15 14 44 44 H 1.08000 * 119.96347 * 179.97438 * 17 16 15 45 45 H 1.09008 * 109.47190 * 329.99600 * 19 18 17 46 46 H 1.08999 * 109.47225 * 209.99599 * 19 18 17 47 47 H 1.08002 * 120.38322 * 359.97415 * 24 23 22 48 48 H 1.07999 * 120.12665 * 179.71735 * 25 24 23 49 49 H 1.08002 * 119.81893 * 180.27433 * 26 25 24 50 50 H 1.08001 * 119.74637 * 179.73124 * 27 26 25 51 51 H 1.07994 * 119.96072 * 179.70776 * 29 18 17 52 52 H 1.08005 * 120.03135 * 180.26969 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5507 -3.8528 9 14 1.2477 0.3987 -5.2572 10 1 0.4223 1.5651 -4.8530 11 1 2.4024 0.8662 -6.0655 12 1 0.4233 -0.5352 -6.0656 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8888 -0.5082 3.7139 16 6 1.4262 0.1451 4.8492 17 6 1.7618 -0.3294 6.1020 18 6 2.5579 -1.4533 6.2270 19 6 2.9216 -1.9684 7.5957 20 6 1.8835 -2.9614 8.0509 21 7 0.7970 -2.6895 8.7267 22 7 0.1307 -3.7670 8.9526 23 6 0.7682 -4.7990 8.4246 24 6 0.4996 -6.1804 8.3730 25 6 1.3782 -7.0047 7.7417 26 6 2.5310 -6.4680 7.1429 27 6 2.7754 -5.1421 7.2006 28 7 1.9057 -4.3046 7.8347 29 6 3.0251 -2.1024 5.0989 30 6 2.6886 -1.6366 3.8431 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1300 -0.7208 -1.2495 38 1 1.6766 -1.7489 -1.2493 39 1 2.8621 -1.8817 -4.7338 40 1 3.1301 -0.7216 1.2489 41 1 1.6768 -1.7490 1.2491 42 1 0.9944 0.7581 2.3564 43 1 0.8046 1.0229 4.7523 44 1 1.4028 0.1782 6.9851 45 1 2.9611 -1.1362 8.2986 46 1 3.8961 -2.4550 7.5536 47 1 -0.3914 -6.5812 8.8334 48 1 1.1890 -8.0670 7.6974 49 1 3.2272 -7.1209 6.6374 50 1 3.6666 -4.7409 6.7408 51 1 3.6505 -2.9770 5.2001 52 1 3.0503 -2.1467 2.9625 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095428880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = 116.330992 kcal Electronic energy + Delta-G solvation = -31262.166321 eV Core-core repulsion = 27227.397942 eV Total energy + Delta-G solvation = -4034.768378 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.196 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.78294 -39.60310 -38.49161 -37.65781 -35.24190 -34.17103 -32.64055 -31.91391 -31.16346 -30.90573 -29.12444 -27.26117 -26.66233 -26.54280 -25.32135 -24.57837 -23.58430 -23.07077 -22.58591 -21.69249 -20.67847 -18.41428 -18.23808 -17.50869 -17.15762 -16.85398 -16.41776 -16.24198 -15.72980 -15.25816 -15.18812 -14.70645 -14.61368 -14.39746 -14.07580 -13.87845 -13.38290 -13.08648 -13.02750 -12.99925 -12.84947 -12.80571 -12.46064 -12.41175 -12.11270 -12.06370 -11.87332 -11.79541 -11.31846 -11.24787 -11.07001 -10.92458 -10.86549 -10.74691 -10.69705 -10.41675 -10.27508 -10.04559 -9.85481 -9.68667 -9.25895 -8.97582 -8.88763 -8.41780 -8.37218 -7.20940 -6.06010 -4.06906 0.24773 0.76948 1.48335 1.56151 2.03019 2.47602 2.99509 3.26254 3.34600 3.37236 3.68257 3.69144 3.86214 4.08029 4.19711 4.36448 4.40884 4.42396 4.54212 4.76054 4.80323 5.02146 5.05887 5.13710 5.29934 5.31180 5.35666 5.39518 5.45601 5.53252 5.54132 5.65648 5.69861 5.72679 5.74386 5.83885 5.96780 6.04862 6.10528 6.12912 6.21427 6.33525 6.38296 6.43275 6.55268 6.59465 6.60684 6.64923 6.90789 7.00334 7.02517 7.06576 7.52848 7.56177 7.68637 7.92653 7.93093 8.31836 8.35248 8.97873 9.56623 11.05528 Molecular weight = 364.20amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.001764 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.065549 B =15872.037599 C =16903.021166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.131 3.869 14 N -0.735 5.735 15 C 0.233 3.767 16 C -0.203 4.203 17 C -0.048 4.048 18 C -0.168 4.168 19 C 0.023 3.977 20 C 0.161 3.839 21 N -0.248 5.248 22 N -0.291 5.291 23 C 0.187 3.813 24 C -0.079 4.079 25 C -0.090 4.090 26 C -0.140 4.140 27 C 0.069 3.931 28 N -0.387 5.387 29 C -0.062 4.062 30 C -0.200 4.200 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.259 0.741 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.399 0.601 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.155 0.845 48 H 0.147 0.853 49 H 0.156 0.844 50 H 0.168 0.832 51 H 0.111 0.889 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -8.024 24.709 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.008 3.992 14 N -0.362 5.362 15 C 0.126 3.874 16 C -0.226 4.226 17 C -0.067 4.067 18 C -0.172 4.172 19 C -0.016 4.016 20 C -0.102 4.102 21 N -0.087 5.087 22 N -0.136 5.136 23 C -0.062 4.062 24 C -0.100 4.100 25 C -0.114 4.114 26 C -0.161 4.161 27 C -0.053 4.053 28 N -0.068 5.068 29 C -0.081 4.081 30 C -0.223 4.223 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.235 0.765 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.125 0.875 46 H 0.104 0.896 47 H 0.173 0.827 48 H 0.165 0.835 49 H 0.174 0.826 50 H 0.185 0.815 51 H 0.129 0.871 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.754 -7.241 25.178 26.257 hybrid contribution 0.437 -0.175 -1.835 1.894 sum 2.191 -7.416 23.343 24.590 Atomic orbital electron populations 1.21750 0.95290 1.01078 1.00273 1.20859 0.95473 0.95877 0.94897 1.21743 1.00418 0.95916 1.00269 1.19097 0.96238 0.95162 0.89637 1.21220 1.31050 1.12073 0.90500 0.92217 1.25014 0.95307 0.95091 0.99135 1.69966 1.37061 1.23089 1.23361 0.86584 0.78635 0.79705 0.83369 1.19784 1.21101 1.21097 1.21608 0.98113 0.95745 0.83760 1.45107 1.56217 1.32514 1.02399 1.17979 0.91761 0.92017 0.85634 1.20569 1.07306 1.03360 0.91397 1.20690 0.94712 0.94611 0.96710 1.19124 1.05682 0.99472 0.92905 1.18816 0.92738 0.94946 0.95139 1.24957 1.00614 0.81050 1.03570 1.74211 1.02000 1.19730 1.12805 1.74955 1.23242 0.93483 1.21959 1.22335 0.86931 0.97138 0.99843 1.20293 1.01467 0.87222 1.01045 1.21189 0.93294 1.00947 0.96002 1.20966 0.99522 0.93504 1.02121 1.21670 0.95460 0.90478 0.97714 1.43681 1.18127 1.08169 1.36773 1.20622 0.97808 0.97924 0.91699 1.20634 1.04830 0.99069 0.97771 0.95173 0.91496 0.93488 0.93442 0.91520 0.95162 0.96426 0.96460 0.93092 0.92550 0.92674 0.76508 0.86341 0.86082 0.87518 0.89553 0.82699 0.83526 0.82646 0.81462 0.87105 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.13 3.80 -4.04 -0.02 2.11 16 14 N -0.74 -10.42 5.14 -58.63 -0.30 -10.72 16 15 C 0.23 3.19 6.65 -83.79 -0.56 2.63 16 16 C -0.20 -2.55 9.90 -39.38 -0.39 -2.94 16 17 C -0.05 -0.56 9.69 -39.61 -0.38 -0.94 16 18 C -0.17 -1.81 5.12 -104.59 -0.54 -2.34 16 19 C 0.02 0.20 5.87 -29.04 -0.17 0.03 16 20 C 0.16 1.84 7.37 -154.22 -1.14 0.70 16 21 N -0.25 -3.57 12.19 32.94 0.40 -3.17 16 22 N -0.29 -4.25 12.31 31.14 0.38 -3.87 16 23 C 0.19 2.17 7.92 -156.06 -1.24 0.94 16 24 C -0.08 -0.62 10.11 -39.40 -0.40 -1.01 16 25 C -0.09 -0.47 10.06 -39.51 -0.40 -0.87 16 26 C -0.14 -0.69 9.98 -39.88 -0.40 -1.09 16 27 C 0.07 0.46 10.91 -16.70 -0.18 0.28 16 28 N -0.39 -3.97 2.95 -59.73 -0.18 -4.15 16 29 C -0.06 -0.67 9.69 -39.61 -0.38 -1.06 16 30 C -0.20 -2.61 9.31 -39.38 -0.37 -2.98 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 32 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 33 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 36 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 0.93 7.95 -51.93 -0.41 0.51 16 41 H 0.06 0.92 7.95 -51.92 -0.41 0.51 16 42 H 0.40 5.35 6.18 -40.82 -0.25 5.10 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.11 0.82 8.08 -51.92 -0.42 0.40 16 46 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 49 H 0.16 0.29 8.06 -52.49 -0.42 -0.13 16 50 H 0.17 0.64 7.84 -52.49 -0.41 0.23 16 51 H 0.11 0.91 7.84 -52.49 -0.41 0.50 16 52 H 0.12 1.61 6.74 -52.48 -0.35 1.25 16 LS Contribution 421.35 15.07 6.35 6.35 Total: -1.00 -33.18 421.35 -11.87 -45.05 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.73 Total: 2.98 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -6.51 Total: -23.25 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 1.04 Total: -47.11 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.18 -11.87 -45.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095428880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.381 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds