Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53001 * 109.47018 * 240.00123 * 2 1 3 5 5 C 1.50703 * 109.47132 * 59.99789 * 4 2 1 6 6 H 1.08003 * 120.00121 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00318 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00222 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47291 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47012 * 120.00692 * 9 7 5 12 12 H 1.48501 * 109.47419 * 240.00517 * 9 7 5 13 13 C 1.52993 * 109.47570 * 120.00052 * 2 1 3 14 14 N 1.46501 * 109.47164 * 300.00240 * 13 2 1 15 15 C 1.39674 * 120.00008 * 179.97438 * 14 13 2 16 16 C 1.38911 * 120.07434 * 180.02562 * 15 14 13 17 17 C 1.38103 * 119.92590 * 180.02562 * 16 15 14 18 18 C 1.38291 * 120.07378 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.92478 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47512 * 89.99320 * 19 18 17 21 21 N 1.30806 * 126.24581 * 269.95861 * 20 19 18 22 22 N 1.28684 * 110.28602 * 180.02562 * 21 20 19 23 23 C 1.32298 * 109.48477 * 0.02562 * 22 21 20 24 24 C 1.40827 * 133.46629 * 179.97438 * 23 22 21 25 25 C 1.36014 * 119.22606 * 180.25334 * 24 23 22 26 26 C 1.40546 * 119.74959 * 359.48767 * 25 24 23 27 27 C 1.34955 * 120.36394 * 0.53667 * 26 25 24 28 28 N 1.36066 * 126.24464 * 89.99883 * 20 19 18 29 29 C 1.38285 * 120.14894 * 0.26569 * 18 17 16 30 30 C 1.38106 * 120.07218 * 359.45855 * 29 18 17 31 31 H 1.09002 * 109.47026 * 299.99464 * 1 2 3 32 32 H 1.08996 * 109.47506 * 60.00332 * 1 2 3 33 33 H 1.09007 * 109.46580 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47109 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47098 * 300.00503 * 3 2 1 36 36 H 1.08997 * 109.46857 * 59.99910 * 3 2 1 37 37 H 1.08999 * 109.47182 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.47194 * 300.00008 * 4 2 1 39 39 H 0.96999 * 120.00125 * 180.02562 * 8 7 5 40 40 H 1.08999 * 109.47295 * 179.97438 * 13 2 1 41 41 H 1.09007 * 109.46814 * 60.00252 * 13 2 1 42 42 H 0.96991 * 119.99980 * 359.97438 * 14 13 2 43 43 H 1.07998 * 120.03811 * 0.04091 * 16 15 14 44 44 H 1.08000 * 119.96347 * 179.97438 * 17 16 15 45 45 H 1.09008 * 109.47190 * 329.99600 * 19 18 17 46 46 H 1.08999 * 109.47225 * 209.99599 * 19 18 17 47 47 H 1.08002 * 120.38322 * 359.97415 * 24 23 22 48 48 H 1.07999 * 120.12665 * 179.71735 * 25 24 23 49 49 H 1.08002 * 119.81893 * 180.27433 * 26 25 24 50 50 H 1.08001 * 119.74637 * 179.73124 * 27 26 25 51 51 H 1.07994 * 119.96072 * 179.70776 * 29 18 17 52 52 H 1.08005 * 120.03135 * 180.26969 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5507 -3.8528 9 14 1.2477 0.3987 -5.2572 10 1 0.4223 1.5651 -4.8530 11 1 2.4024 0.8662 -6.0655 12 1 0.4233 -0.5352 -6.0656 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8888 -0.5082 3.7139 16 6 1.4262 0.1451 4.8492 17 6 1.7618 -0.3294 6.1020 18 6 2.5579 -1.4533 6.2270 19 6 2.9216 -1.9684 7.5957 20 6 1.8835 -2.9614 8.0509 21 7 0.7970 -2.6895 8.7267 22 7 0.1307 -3.7670 8.9526 23 6 0.7682 -4.7990 8.4246 24 6 0.4996 -6.1804 8.3730 25 6 1.3782 -7.0047 7.7417 26 6 2.5310 -6.4680 7.1429 27 6 2.7754 -5.1421 7.2006 28 7 1.9057 -4.3046 7.8347 29 6 3.0251 -2.1024 5.0989 30 6 2.6886 -1.6366 3.8431 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 3.1299 1.4425 -0.0005 35 1 1.6765 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1300 -0.7208 -1.2495 38 1 1.6766 -1.7489 -1.2493 39 1 2.8621 -1.8817 -4.7338 40 1 3.1301 -0.7216 1.2489 41 1 1.6768 -1.7490 1.2491 42 1 0.9944 0.7581 2.3564 43 1 0.8046 1.0229 4.7523 44 1 1.4028 0.1782 6.9851 45 1 2.9611 -1.1362 8.2986 46 1 3.8961 -2.4550 7.5536 47 1 -0.3914 -6.5812 8.8334 48 1 1.1890 -8.0670 7.6974 49 1 3.2272 -7.1209 6.6374 50 1 3.6666 -4.7409 6.7408 51 1 3.6505 -2.9770 5.2001 52 1 3.0503 -2.1467 2.9625 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095428880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = 100.633151 kcal Electronic energy + Delta-G solvation = -31262.847030 eV Core-core repulsion = 27227.397942 eV Total energy + Delta-G solvation = -4035.449088 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.196 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -44.51006 -40.59506 -39.11753 -38.98133 -36.30682 -35.09393 -34.31523 -32.90451 -31.86794 -31.78132 -30.03543 -28.98731 -28.00383 -27.83497 -26.47816 -25.15178 -24.78847 -24.19333 -23.56007 -22.60034 -21.56328 -19.76953 -19.00833 -18.38376 -18.32818 -17.98491 -17.65348 -16.85543 -16.67175 -16.48407 -16.08970 -15.81297 -15.80772 -15.35281 -15.21277 -15.01139 -14.44138 -14.39183 -14.32611 -14.16900 -13.95232 -13.58154 -13.51240 -13.42744 -13.07699 -13.03472 -12.87592 -12.76868 -12.63222 -12.60779 -12.48292 -12.37289 -12.25332 -11.97570 -11.96020 -11.74715 -11.59578 -11.52805 -10.99980 -10.85332 -10.82092 -10.53110 -10.52292 -9.80496 -9.03188 -8.24151 -8.16288 -6.22910 -0.26302 0.13933 0.57209 0.64926 1.38873 1.39121 1.41068 1.52028 1.70792 2.40774 2.41294 2.57973 2.88645 3.16610 3.18320 3.54417 3.59554 3.75799 3.91750 3.95837 3.99921 4.03896 4.08310 4.12769 4.16950 4.22504 4.39889 4.54243 4.63998 4.65774 4.70772 4.71603 4.73050 4.76258 4.90436 4.91883 4.94043 5.04112 5.08129 5.08553 5.11823 5.18563 5.21013 5.40064 5.44873 5.46244 5.48505 5.49101 5.51115 5.54093 5.76542 5.78428 5.88258 5.94826 6.01269 6.29229 6.45949 6.87379 6.92200 7.44466 7.51466 8.96086 Molecular weight = 364.20amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.001764 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.065549 B =15872.037599 C =16903.021166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.067 0.933 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.149 3.851 14 N -0.735 5.735 15 C 0.212 3.788 16 C -0.209 4.209 17 C -0.059 4.059 18 C -0.161 4.161 19 C 0.028 3.972 20 C 0.155 3.845 21 N -0.290 5.290 22 N -0.350 5.350 23 C 0.177 3.823 24 C -0.113 4.113 25 C -0.064 4.064 26 C -0.132 4.132 27 C 0.049 3.951 28 N -0.390 5.390 29 C -0.060 4.060 30 C -0.217 4.217 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.061 0.939 37 H -0.009 1.009 38 H -0.011 1.011 39 H 0.260 0.740 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.403 0.597 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.165 0.835 48 H 0.184 0.816 49 H 0.196 0.804 50 H 0.198 0.802 51 H 0.142 0.858 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -8.890 25.402 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.781 3.219 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.025 3.975 14 N -0.364 5.364 15 C 0.107 3.893 16 C -0.232 4.232 17 C -0.078 4.078 18 C -0.164 4.164 19 C -0.011 4.011 20 C -0.109 4.109 21 N -0.129 5.129 22 N -0.195 5.195 23 C -0.073 4.073 24 C -0.135 4.135 25 C -0.088 4.088 26 C -0.152 4.152 27 C -0.072 4.072 28 N -0.070 5.070 29 C -0.078 4.078 30 C -0.239 4.239 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.010 0.990 38 H 0.007 0.993 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.239 0.761 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.183 0.817 48 H 0.202 0.798 49 H 0.213 0.787 50 H 0.215 0.785 51 H 0.160 0.840 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.649 -8.093 25.907 27.270 hybrid contribution 0.235 -0.102 -1.977 1.994 sum 2.884 -8.195 23.930 25.458 Atomic orbital electron populations 1.21671 0.94424 1.00716 1.00988 1.20670 0.96064 0.96184 0.93552 1.21659 0.99982 0.95055 1.01006 1.18957 0.94465 0.94161 0.91971 1.21611 1.30293 1.11990 0.91333 0.91543 1.25883 0.95725 0.95902 1.02490 1.70097 1.38693 1.24787 1.24026 0.85545 0.78102 0.78789 0.79512 1.18556 1.20886 1.20961 1.21195 0.97588 0.95050 0.83697 1.44836 1.56935 1.32747 1.01918 1.18143 0.92834 0.92833 0.85466 1.20728 1.07383 1.03697 0.91385 1.20956 0.94856 0.95222 0.96760 1.19379 1.04395 0.98680 0.93974 1.18950 0.93377 0.94996 0.93826 1.25265 1.00350 0.82056 1.03277 1.74051 1.03543 1.20644 1.14625 1.74806 1.25212 0.94531 1.24962 1.22851 0.87140 0.98029 0.99234 1.20619 1.03348 0.86036 1.03449 1.21738 0.91938 1.02399 0.92752 1.21570 0.99602 0.93319 1.00739 1.22440 0.95965 0.91076 0.97737 1.43835 1.18293 1.08051 1.36816 1.20939 0.97582 0.98586 0.90730 1.20793 1.05287 0.99242 0.98613 0.92110 0.93014 0.94410 0.94093 0.93093 0.92005 0.99049 0.99267 0.93118 0.93143 0.93661 0.76066 0.85447 0.85136 0.86725 0.86277 0.81714 0.79830 0.78715 0.78502 0.83993 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -27.35 7.65 25.60 0.20 -27.15 16 6 H 0.07 3.39 5.68 -2.91 -0.02 3.37 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.15 4.85 3.80 86.38 0.33 5.18 16 14 N -0.74 -20.22 5.14 -339.42 -1.74 -21.97 16 15 C 0.21 5.63 6.65 38.21 0.25 5.89 16 16 C -0.21 -5.04 9.90 22.40 0.22 -4.82 16 17 C -0.06 -1.31 9.69 22.25 0.22 -1.09 16 18 C -0.16 -3.15 5.12 -19.84 -0.10 -3.25 16 19 C 0.03 0.42 5.87 29.10 0.17 0.59 16 20 C 0.15 3.43 7.37 137.71 1.02 4.45 16 21 N -0.29 -8.66 12.19 -49.68 -0.61 -9.26 16 22 N -0.35 -10.76 12.31 -55.40 -0.68 -11.45 16 23 C 0.18 4.13 7.92 134.07 1.06 5.19 16 24 C -0.11 -1.64 10.11 22.39 0.23 -1.41 16 25 C -0.06 -0.44 10.06 22.32 0.22 -0.22 16 26 C -0.13 -0.72 9.98 22.08 0.22 -0.50 16 27 C 0.05 0.49 10.91 83.23 0.91 1.40 16 28 N -0.39 -7.46 2.95 -342.88 -1.01 -8.47 16 29 C -0.06 -1.17 9.69 22.25 0.22 -0.96 16 30 C -0.22 -5.42 9.31 22.40 0.21 -5.21 16 31 H 0.06 1.74 6.86 -2.39 -0.02 1.73 16 32 H 0.05 1.95 6.62 -2.39 -0.02 1.94 16 33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 36 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.05 1.68 7.95 -2.39 -0.02 1.67 16 41 H 0.05 1.55 7.95 -2.38 -0.02 1.53 16 42 H 0.40 10.17 6.18 -92.71 -0.57 9.60 16 43 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 45 H 0.11 1.57 8.08 -2.38 -0.02 1.55 16 46 H 0.12 1.00 8.08 -2.39 -0.02 0.98 16 47 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 48 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 49 H 0.20 -0.45 8.06 -2.91 -0.02 -0.47 16 50 H 0.20 0.60 7.84 -2.91 -0.02 0.58 16 51 H 0.14 1.80 7.84 -2.91 -0.02 1.78 16 52 H 0.12 3.01 6.74 -2.91 -0.02 2.99 16 Total: -1.00 -77.06 421.35 5.71 -71.35 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.36 Total: 18.63 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 7.08 Total: -29.03 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.76 Total: -106.36 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -77.06 5.71 -71.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095428880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.987 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds