Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35890 * 116.99618 * 2 1 4 4 C 1.38793 * 120.03020 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.05046 * 180.02562 * 4 3 2 6 6 C 1.38190 * 120.11319 * 0.03297 * 5 4 3 7 7 C 1.50703 * 119.97408 * 180.02562 * 6 5 4 8 8 N 1.46909 * 109.46672 * 265.84443 * 7 6 5 9 9 C 1.46900 * 110.99786 * 286.82505 * 8 7 6 10 10 C 1.50693 * 109.47640 * 295.80228 * 9 8 7 11 11 H 1.08003 * 119.99730 * 357.00120 * 10 9 8 12 12 C 1.37876 * 120.00383 * 176.99852 * 10 9 8 13 13 N 1.31512 * 119.99852 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00063 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46988 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.46953 * 120.00206 * 14 12 10 17 17 H 1.48504 * 109.46857 * 240.00511 * 14 12 10 18 18 C 1.46892 * 110.99903 * 162.87516 * 8 7 6 19 19 C 1.52995 * 109.47379 * 195.82862 * 18 8 7 20 20 N 1.46901 * 109.47505 * 185.14473 * 19 18 8 21 21 C 1.47016 * 110.99760 * 293.63287 * 20 19 18 22 22 C 1.53096 * 109.25625 * 177.60978 * 21 20 19 23 23 O 1.43014 * 109.26205 * 56.84729 * 22 21 20 24 24 C 1.43017 * 113.73792 * 301.33209 * 23 22 21 25 25 C 1.47016 * 110.99905 * 170.00097 * 20 19 18 26 26 C 1.38753 * 120.05657 * 359.97156 * 6 5 4 27 27 O 1.35898 * 120.02886 * 179.97438 * 26 6 5 28 28 C 1.42901 * 116.99671 * 179.97438 * 27 26 6 29 29 C 1.38617 * 120.02497 * 180.28064 * 3 2 1 30 30 H 1.09004 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47051 * 300.00090 * 1 2 3 32 32 H 1.08999 * 109.47181 * 60.00392 * 1 2 3 33 33 H 1.07996 * 119.97294 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.94062 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.47274 * 25.83891 * 7 6 5 36 36 H 1.08995 * 109.47423 * 145.84917 * 7 6 5 37 37 H 1.08998 * 109.47057 * 55.80541 * 9 8 7 38 38 H 1.09004 * 109.46960 * 175.79907 * 9 8 7 39 39 H 0.97000 * 119.99936 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.47326 * 315.82781 * 18 8 7 41 41 H 1.09000 * 109.47432 * 75.82275 * 18 8 7 42 42 H 1.08998 * 109.46926 * 305.14650 * 19 18 8 43 43 H 1.09002 * 109.47676 * 65.13911 * 19 18 8 44 44 H 1.08999 * 109.50628 * 297.54058 * 21 20 19 45 45 H 1.08999 * 109.50815 * 57.67205 * 21 20 19 46 46 H 1.09003 * 109.50661 * 296.90855 * 22 21 20 47 47 H 1.09000 * 109.54621 * 176.80816 * 22 21 20 48 48 H 1.09005 * 109.50674 * 298.73217 * 24 23 22 49 49 H 1.09002 * 109.54015 * 178.62961 * 24 23 22 50 50 H 1.09001 * 109.50742 * 302.32350 * 25 20 19 51 51 H 1.08997 * 109.50965 * 62.41535 * 25 20 19 52 52 H 1.08997 * 109.47101 * 60.00059 * 28 27 26 53 53 H 1.09001 * 109.47364 * 299.99667 * 28 27 26 54 54 H 1.09001 * 109.46876 * 179.97438 * 28 27 26 55 55 H 1.08003 * 120.05700 * 359.97083 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9172 3.6065 -0.0011 6 6 3.2971 3.6821 -0.0018 7 6 3.9774 5.0268 -0.0018 8 7 4.2873 5.4187 -1.3833 9 6 5.4062 4.6298 -1.9159 10 6 6.6544 4.9323 -1.1276 11 1 6.6314 5.6754 -0.3442 12 6 7.8256 4.2605 -1.4065 13 7 7.8537 3.3560 -2.3607 14 14 9.3727 4.6351 -0.4288 15 1 9.0788 5.6846 0.5799 16 1 9.8343 3.4025 0.2587 17 1 10.4348 5.1165 -1.3483 18 6 4.5688 6.8577 -1.4717 19 6 4.4965 7.3027 -2.9337 20 7 4.8978 8.7120 -3.0371 21 6 3.9269 9.5869 -2.3638 22 6 4.4131 11.0364 -2.4439 23 8 4.6048 11.3947 -3.8152 24 6 5.5447 10.5633 -4.5014 25 6 5.0699 9.1090 -4.4422 26 6 4.0567 2.5210 -0.0013 27 8 5.4136 2.5960 -0.0025 28 6 6.1316 1.3605 -0.0014 29 6 3.4301 1.2841 -0.0059 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2120 2.3187 -0.0005 34 1 1.3277 4.5114 -0.0011 35 1 3.3164 5.7684 0.4466 36 1 4.9006 4.9670 0.5746 37 1 5.1733 3.5681 -1.8344 38 1 5.5663 4.8872 -2.9629 39 1 8.6778 2.8836 -2.5571 40 1 3.8318 7.4087 -0.8874 41 1 5.5661 7.0576 -1.0799 42 1 5.1680 6.6887 -3.5339 43 1 3.4758 7.1878 -3.2986 44 1 2.9575 9.5006 -2.8547 45 1 3.8341 9.2913 -1.3188 46 1 5.3565 11.1341 -1.9068 47 1 3.6695 11.6957 -1.9961 48 1 6.5211 10.6472 -4.0242 49 1 5.6197 10.8797 -5.5417 50 1 5.8116 8.4646 -4.9142 51 1 4.1190 9.0143 -4.9664 52 1 5.8692 0.7869 -0.8904 53 1 5.8707 0.7894 0.8896 54 1 7.2027 1.5627 -0.0030 55 1 4.0197 0.3792 -0.0100 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095430313.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = -86.353735 kcal Electronic energy + Delta-G solvation = -34764.992843 eV Core-core repulsion = 30381.833725 eV Total energy + Delta-G solvation = -4383.159119 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 364.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.43671 -40.52457 -39.84274 -38.56371 -37.30669 -36.41752 -34.33090 -32.40884 -32.09449 -31.17201 -30.24182 -29.00708 -28.09513 -27.92119 -26.80833 -25.69492 -24.91932 -24.00389 -22.91889 -22.04479 -21.32930 -21.06848 -19.45447 -18.33342 -17.73646 -17.56372 -17.09946 -17.00873 -16.93618 -16.73182 -16.43539 -16.24861 -16.16332 -15.95801 -15.80551 -15.60435 -15.43733 -15.26662 -14.69321 -14.49703 -14.27742 -13.96389 -13.89379 -13.38769 -13.30815 -13.21450 -13.10556 -12.92248 -12.75461 -12.70122 -12.45785 -12.35133 -12.30794 -12.27197 -12.05939 -11.89771 -11.80918 -11.68567 -11.61373 -11.42233 -11.28878 -11.23397 -10.63251 -10.33440 -9.42405 -9.32670 -8.91948 -8.67206 -7.92369 -6.01407 0.50376 0.60885 1.36080 1.41260 1.48954 2.35272 2.49626 2.67989 2.70131 2.88876 3.00330 3.35523 3.73897 3.91138 3.95597 4.02001 4.07040 4.15154 4.19106 4.21726 4.27352 4.31665 4.32941 4.39725 4.44175 4.46012 4.50772 4.54318 4.61974 4.66283 4.70916 4.72974 4.77293 4.79418 4.80790 4.84505 4.84904 4.93240 5.02033 5.07028 5.12880 5.29396 5.30492 5.43305 5.52553 5.64441 5.70551 5.82204 5.97879 6.02639 6.06022 6.19145 6.30820 6.45849 6.47901 6.66538 6.76676 7.11174 7.63189 9.11056 Molecular weight = 364.22amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.003245 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.950589 B = 8627.849195 C =11259.717241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.153 3.847 4 C -0.248 4.248 5 C -0.027 4.027 6 C -0.154 4.154 7 C 0.117 3.883 8 N -0.537 5.537 9 C 0.209 3.791 10 C -0.505 4.505 11 H 0.041 0.959 12 C 0.036 3.964 13 N -0.917 5.917 14 Si 0.922 3.078 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.290 1.290 18 C 0.073 3.927 19 C 0.083 3.917 20 N -0.549 5.549 21 C 0.018 3.982 22 C 0.064 3.936 23 O -0.401 6.401 24 C 0.068 3.932 25 C 0.019 3.981 26 C 0.163 3.837 27 O -0.283 6.283 28 C 0.044 3.956 29 C -0.268 4.268 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.028 0.972 38 H -0.013 1.013 39 H 0.255 0.745 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.040 0.960 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.121 0.879 48 H 0.056 0.944 49 H 0.118 0.882 50 H 0.079 0.921 51 H 0.040 0.960 52 H 0.045 0.955 53 H 0.065 0.935 54 H 0.079 0.921 55 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 3.618 3.263 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.108 3.892 4 C -0.266 4.266 5 C -0.046 4.046 6 C -0.155 4.155 7 C -0.011 4.011 8 N -0.261 5.261 9 C 0.082 3.918 10 C -0.544 4.544 11 H 0.059 0.941 12 C -0.162 4.162 13 N -0.558 5.558 14 Si 0.750 3.250 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.216 1.216 18 C -0.056 4.056 19 C -0.045 4.045 20 N -0.275 5.275 21 C -0.110 4.110 22 C -0.012 4.012 23 O -0.320 6.320 24 C -0.009 4.009 25 C -0.109 4.109 26 C 0.115 3.885 27 O -0.194 6.194 28 C -0.052 4.052 29 C -0.287 4.287 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.005 0.995 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.139 0.861 48 H 0.074 0.926 49 H 0.136 0.864 50 H 0.097 0.903 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.083 0.917 54 H 0.098 0.902 55 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.008 3.589 3.041 14.776 hybrid contribution 1.506 -0.730 0.377 1.715 sum -12.502 2.859 3.417 13.272 Atomic orbital electron populations 1.23355 0.76234 1.05474 1.02451 1.86014 1.23727 1.26826 1.88560 1.18730 0.91186 0.85001 0.94329 1.21276 1.00948 0.91205 1.13201 1.20836 0.91920 0.98255 0.93556 1.19248 0.93600 0.93053 1.09642 1.20601 0.97814 0.92758 0.89892 1.62468 1.40687 1.03742 1.19187 1.19436 0.86296 0.93575 0.92451 1.21579 0.95920 1.19739 1.17197 0.94090 1.25232 1.00140 0.95140 0.95737 1.70060 1.27131 1.26537 1.32074 0.86078 0.81777 0.77908 0.79211 1.20189 1.20674 1.21610 1.21818 0.99422 0.88787 0.95536 1.21752 0.97927 0.87298 0.97514 1.62114 1.47715 1.02947 1.14743 1.22863 0.93488 0.93979 1.00665 1.22793 1.01768 0.94105 0.82575 1.87922 1.63597 1.56003 1.24457 1.22724 0.91823 0.87732 0.98602 1.22777 1.00927 0.98271 0.88923 1.18999 0.83689 0.93253 0.92555 1.86586 1.14404 1.31789 1.86641 1.22840 0.96499 0.85376 1.00452 1.20441 0.93604 0.97168 1.17505 0.86321 0.91317 0.91813 0.82655 0.83004 0.89862 0.95303 0.95428 0.99540 0.93580 0.90918 0.95391 0.93182 0.94772 0.94128 0.88974 0.92565 0.86129 0.92581 0.86373 0.90265 0.94162 0.93645 0.91703 0.90229 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.09 10.49 -92.32 -0.97 -10.06 16 3 C 0.15 4.72 6.68 22.49 0.15 4.87 16 4 C -0.25 -6.59 9.04 22.38 0.20 -6.39 16 5 C -0.03 -0.79 9.67 22.24 0.22 -0.58 16 6 C -0.15 -5.65 5.18 -19.75 -0.10 -5.76 16 7 C 0.12 4.49 4.83 85.56 0.41 4.90 16 8 N -0.54 -22.51 4.60 -905.39 -4.17 -26.67 16 9 C 0.21 10.67 4.41 85.55 0.38 11.05 16 10 C -0.50 -27.10 6.01 25.60 0.15 -26.95 16 11 H 0.04 2.26 6.02 -2.91 -0.02 2.24 16 12 C 0.04 1.97 5.46 84.65 0.46 2.43 16 13 N -0.92 -52.21 13.29 21.45 0.28 -51.93 16 14 Si 0.92 44.05 29.54 68.60 2.03 46.08 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 18 C 0.07 2.75 4.60 86.30 0.40 3.15 16 19 C 0.08 2.98 5.09 86.30 0.44 3.42 16 20 N -0.55 -17.11 4.73 -895.22 -4.23 -21.34 16 21 C 0.02 0.45 5.44 86.31 0.47 0.92 16 22 C 0.06 1.42 7.01 72.01 0.50 1.92 16 23 O -0.40 -10.07 10.83 -148.98 -1.61 -11.69 16 24 C 0.07 1.59 7.01 72.02 0.50 2.10 16 25 C 0.02 0.53 5.64 86.31 0.49 1.02 16 26 C 0.16 6.47 5.67 22.49 0.13 6.59 16 27 O -0.28 -12.56 6.22 -92.40 -0.58 -13.14 16 28 C 0.04 1.68 9.81 113.37 1.11 2.79 16 29 C -0.27 -9.54 8.97 22.46 0.20 -9.33 16 30 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 32 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 33 H 0.16 2.97 6.29 -2.91 -0.02 2.95 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.08 2.64 7.62 -2.39 -0.02 2.62 16 36 H 0.03 1.29 6.04 -2.39 -0.01 1.27 16 37 H 0.03 1.54 5.03 -2.39 -0.01 1.53 16 38 H -0.01 -0.76 6.62 -2.38 -0.02 -0.78 16 39 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.07 2.32 6.34 -2.39 -0.02 2.31 16 41 H 0.03 1.24 6.10 -2.39 -0.01 1.22 16 42 H 0.05 2.13 6.48 -2.39 -0.02 2.12 16 43 H 0.03 1.18 8.12 -2.39 -0.02 1.16 16 44 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 2.20 6.49 -2.39 -0.02 2.18 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 49 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.08 2.26 8.09 -2.39 -0.02 2.25 16 51 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.04 1.74 7.65 -2.39 -0.02 1.72 16 53 H 0.06 2.06 7.67 -2.39 -0.02 2.04 16 54 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 55 H 0.13 4.43 6.30 -2.91 -0.02 4.41 16 Total: -1.00 -67.01 419.03 -1.13 -68.14 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.88 Total: 23.04 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 7.23 Total: -2.43 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -8.12 Total: -99.95 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -3.16 Total: -34.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.01 -1.13 -68.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095430313.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.213 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds