Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46979 * 2 1 4 4 N 1.46503 * 109.47189 * 240.00139 * 2 1 3 5 5 S 1.65600 * 120.00266 * 94.99310 * 4 2 1 6 6 O 1.42096 * 106.40330 * 178.54187 * 5 4 2 7 7 O 1.42096 * 106.40455 * 311.46868 * 5 4 2 8 8 C 1.76200 * 107.21224 * 65.00351 * 5 4 2 9 9 H 1.08002 * 120.00300 * 0.02562 * 8 5 4 10 10 C 1.37882 * 119.99793 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99993 * 359.97438 * 10 8 5 12 12 Si 1.86802 * 120.00082 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.46955 * 89.99960 * 12 10 8 14 14 H 1.48497 * 109.46903 * 210.00099 * 12 10 8 15 15 H 1.48497 * 109.46980 * 329.99734 * 12 10 8 16 16 C 1.50694 * 109.47454 * 119.99917 * 2 1 3 17 17 C 1.38278 * 119.93463 * 260.00114 * 16 2 1 18 18 C 1.38170 * 120.09716 * 180.02562 * 17 16 2 19 19 C 1.38687 * 119.96464 * 359.97438 * 18 17 16 20 20 O 1.35946 * 120.05983 * 179.97438 * 19 18 17 21 21 C 1.35872 * 118.00168 * 0.54724 * 20 19 18 22 22 C 1.38761 * 120.06264 * 269.72810 * 21 20 19 23 23 C 1.38134 * 119.94212 * 179.74527 * 22 21 20 24 24 C 1.38273 * 120.06190 * 0.50486 * 23 22 21 25 25 C 1.38281 * 120.11231 * 359.77092 * 24 23 22 26 26 C 1.38134 * 120.05598 * 359.97438 * 25 24 23 27 27 C 1.38927 * 119.87561 * 359.97438 * 19 18 17 28 28 F 1.35098 * 120.05268 * 180.02562 * 27 19 18 29 29 C 1.38258 * 119.93718 * 79.72421 * 16 2 1 30 30 H 1.09005 * 109.47657 * 59.99961 * 1 2 3 31 31 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46902 * 299.99966 * 1 2 3 33 33 H 0.96997 * 119.99546 * 275.00521 * 4 2 1 34 34 H 0.96996 * 119.99794 * 179.97438 * 11 10 8 35 35 H 1.07994 * 119.94913 * 359.97438 * 17 16 2 36 36 H 1.07995 * 120.01496 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.02473 * 359.97438 * 22 21 20 38 38 H 1.08001 * 119.96601 * 180.27854 * 23 22 21 39 39 H 1.07993 * 119.94451 * 179.74971 * 24 23 22 40 40 H 1.07995 * 119.96777 * 179.97438 * 25 24 23 41 41 H 1.08007 * 120.02314 * 179.97438 * 26 25 24 42 42 H 1.08007 * 119.98089 * 359.97438 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4120 0.1771 -2.5506 6 8 2.8775 -0.7635 -3.5086 7 8 1.3246 1.0593 -2.7922 8 6 3.7926 1.1910 -2.1372 9 1 4.2102 1.1550 -1.1419 10 6 4.3404 2.0294 -3.0849 11 7 3.8328 2.0721 -4.2974 12 14 5.8045 3.1037 -2.6469 13 1 7.0619 2.3670 -2.9320 14 1 5.7653 4.3479 -3.4567 15 1 5.7501 3.4504 -1.2040 16 6 2.0323 -0.7103 1.2304 17 6 2.4586 0.0211 2.3238 18 6 2.9203 -0.6268 3.4534 19 6 2.9560 -2.0127 3.4913 20 8 3.4105 -2.6521 4.6016 21 6 3.8095 -1.8937 5.6560 22 6 5.1314 -1.4839 5.7568 23 6 5.5332 -0.7086 6.8271 24 6 4.6219 -0.3496 7.8031 25 6 3.3053 -0.7615 7.7081 26 6 2.8971 -1.5325 6.6371 27 6 2.5265 -2.7463 2.3925 28 9 2.5593 -4.0964 2.4256 29 6 2.0609 -2.0922 1.2660 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.1109 -1.6561 -1.1949 34 1 4.2180 2.6622 -4.9639 35 1 2.4312 1.1003 2.2943 36 1 3.2533 -0.0542 4.3064 37 1 5.8446 -1.7677 4.9970 38 1 6.5609 -0.3856 6.9035 39 1 4.9390 0.2532 8.6411 40 1 2.5956 -0.4801 8.4719 41 1 1.8687 -1.8543 6.5636 42 1 1.7228 -2.6612 0.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = -113.993482 kcal Electronic energy + Delta-G solvation = -29935.939960 eV Core-core repulsion = 25501.490007 eV Total energy + Delta-G solvation = -4434.449953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -48.81791 -41.09047 -39.22736 -37.93973 -35.46152 -34.98808 -33.95342 -33.09417 -31.41122 -31.09702 -30.58729 -29.85860 -28.36153 -26.15077 -24.41743 -23.13032 -22.94797 -22.43385 -20.83339 -19.17469 -18.95219 -17.64078 -17.59168 -16.80941 -16.66740 -16.45239 -16.08281 -15.61110 -15.50087 -15.47390 -14.88221 -14.52352 -14.22420 -14.07415 -13.88139 -13.76589 -13.59088 -13.47359 -13.29039 -12.91019 -12.80947 -12.41316 -12.14129 -12.04452 -11.98767 -11.65708 -11.38344 -11.23456 -11.21487 -11.04308 -10.97710 -10.62197 -10.32456 -10.24920 -10.16716 -9.43334 -9.26031 -9.15502 -9.12342 -9.00063 -8.59863 -8.25250 -6.71525 -5.33376 0.67693 0.90804 1.05556 1.09464 2.32318 2.76515 3.05501 3.12587 3.18000 3.41018 3.44764 4.04743 4.08825 4.49481 4.49619 4.57292 4.62787 4.67407 4.68823 4.74873 4.90677 4.94732 5.09118 5.11150 5.17101 5.44610 5.55049 5.55412 5.64174 5.74240 5.78217 5.91100 5.91959 5.97268 5.98804 6.03256 6.05088 6.16816 6.30726 6.33503 6.50808 6.61024 6.68414 6.85880 7.28437 7.31012 7.83727 7.96085 8.87948 10.22704 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.002760 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.269162 B =10141.811662 C =11487.043389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.199 3.801 3 H 0.102 0.898 4 N -1.131 6.131 5 S 2.714 3.286 6 O -1.006 7.006 7 O -1.003 7.003 8 C -1.021 5.021 9 H 0.102 0.898 10 C 0.134 3.866 11 N -0.845 5.845 12 Si 0.919 3.081 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.263 1.263 16 C -0.076 4.076 17 C -0.082 4.082 18 C -0.164 4.164 19 C 0.081 3.919 20 O -0.255 6.255 21 C 0.083 3.917 22 C -0.124 4.124 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.125 4.125 27 C 0.078 3.922 28 F -0.133 7.133 29 C -0.108 4.108 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.291 0.709 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -3.823 23.451 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.091 3.909 3 H 0.120 0.880 4 N -0.885 5.885 5 S 2.814 3.186 6 O -0.996 6.996 7 O -0.993 6.993 8 C -1.154 5.154 9 H 0.120 0.880 10 C -0.084 4.084 11 N -0.474 5.474 12 Si 0.743 3.257 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.187 1.187 16 C -0.078 4.078 17 C -0.101 4.101 18 C -0.183 4.183 19 C 0.038 3.962 20 O -0.168 6.168 21 C 0.041 3.959 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.143 4.143 27 C 0.059 3.941 28 F -0.111 7.111 29 C -0.127 4.127 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.342 -3.878 22.427 22.799 hybrid contribution 1.422 0.155 0.706 1.596 sum 0.080 -3.723 23.133 23.431 Atomic orbital electron populations 1.22343 0.94551 1.02398 1.03221 1.19464 0.94003 0.95920 0.81499 0.87977 1.56240 1.83643 1.18597 1.29998 1.00467 0.75025 0.72944 0.70166 1.93379 1.82943 1.64814 1.58498 1.93362 1.56641 1.65902 1.83399 1.30557 1.36870 1.40727 1.07268 0.87961 1.24729 0.96535 0.94120 0.93035 1.69896 1.39160 1.35000 1.03382 0.86190 0.80941 0.79047 0.79544 1.19235 1.19988 1.18679 1.20016 0.98779 0.92705 0.96269 1.20966 0.96709 1.00755 0.91628 1.21121 1.04836 0.91765 1.00562 1.19080 0.99411 0.91452 0.86307 1.84399 1.78163 1.33263 1.20972 1.18663 0.92720 0.96158 0.88311 1.21491 0.95534 0.97526 0.99665 1.21107 1.00198 0.97430 0.93708 1.21300 0.93438 0.99848 0.99018 1.21086 0.96357 0.97457 0.97664 1.21448 0.99941 0.98023 0.94907 1.16850 1.06408 0.76976 0.93902 1.91500 1.94657 1.28215 1.96771 1.20816 1.00456 0.94841 0.96599 0.90103 0.92500 0.92014 0.76777 0.89892 0.84344 0.84585 0.84935 0.85107 0.85416 0.85166 0.85051 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.49 37.16 0.35 -2.01 16 2 C 0.20 3.18 2.97 -69.09 -0.21 2.98 16 3 H 0.10 1.68 7.71 -51.93 -0.40 1.28 16 4 N -1.13 -21.27 5.43 -5.88 -0.03 -21.31 16 5 S 2.71 69.23 4.93 -107.50 -0.53 68.70 16 6 O -1.01 -28.96 18.02 -57.17 -1.03 -29.99 16 7 O -1.00 -27.80 17.28 -57.17 -0.99 -28.79 16 8 C -1.02 -27.17 9.58 30.60 0.29 -26.88 16 9 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 10 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 11 N -0.84 -24.45 13.19 55.43 0.73 -23.72 16 12 Si 0.92 20.18 29.54 -169.99 -5.02 15.16 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 16 C -0.08 -1.05 4.96 -104.60 -0.52 -1.57 16 17 C -0.08 -1.01 9.66 -39.59 -0.38 -1.39 16 18 C -0.16 -1.95 9.20 -39.44 -0.36 -2.31 16 19 C 0.08 1.07 6.68 -39.16 -0.26 0.81 16 20 O -0.26 -3.35 9.85 -3.68 -0.04 -3.39 16 21 C 0.08 0.90 3.95 -39.19 -0.16 0.74 16 22 C -0.12 -1.17 9.89 -39.43 -0.39 -1.56 16 23 C -0.11 -0.79 10.04 -39.61 -0.40 -1.19 16 24 C -0.12 -0.78 10.04 -39.55 -0.40 -1.18 16 25 C -0.11 -0.75 10.04 -39.60 -0.40 -1.15 16 26 C -0.12 -1.11 9.92 -39.43 -0.39 -1.50 16 27 C 0.08 1.10 7.31 -39.29 -0.29 0.82 16 28 F -0.13 -1.97 17.11 2.25 0.04 -1.93 16 29 C -0.11 -1.47 9.12 -39.54 -0.36 -1.83 16 30 H 0.08 1.33 7.64 -51.93 -0.40 0.93 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 6.60 7.09 -34.47 -0.24 6.36 16 34 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.14 1.44 8.03 -52.49 -0.42 1.02 16 36 H 0.14 1.41 6.68 -52.49 -0.35 1.06 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.15 1.79 6.83 -52.48 -0.36 1.44 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -35.28 381.66 -9.75 -45.03 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.68 Total: 8.15 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -3.96 Total: -33.67 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.70 Total: -45.02 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -2.05 Total: -62.17 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 69.23 SS G_CDS: -0.53 Total: 68.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.28 -9.75 -45.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.964 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds