Wall clock time and date at job start Tue Mar 31 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46979 * 2 1 4 4 N 1.46503 * 109.47189 * 240.00139 * 2 1 3 5 5 S 1.65600 * 120.00266 * 94.99310 * 4 2 1 6 6 O 1.42096 * 106.40330 * 178.54187 * 5 4 2 7 7 O 1.42096 * 106.40455 * 311.46868 * 5 4 2 8 8 C 1.76200 * 107.21224 * 65.00351 * 5 4 2 9 9 H 1.08002 * 120.00300 * 0.02562 * 8 5 4 10 10 C 1.37882 * 119.99793 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99993 * 359.97438 * 10 8 5 12 12 Si 1.86802 * 120.00082 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.46955 * 89.99960 * 12 10 8 14 14 H 1.48497 * 109.46903 * 210.00099 * 12 10 8 15 15 H 1.48497 * 109.46980 * 329.99734 * 12 10 8 16 16 C 1.50694 * 109.47454 * 119.99917 * 2 1 3 17 17 C 1.38278 * 119.93463 * 260.00114 * 16 2 1 18 18 C 1.38170 * 120.09716 * 180.02562 * 17 16 2 19 19 C 1.38687 * 119.96464 * 359.97438 * 18 17 16 20 20 O 1.35946 * 120.05983 * 179.97438 * 19 18 17 21 21 C 1.35872 * 118.00168 * 0.54724 * 20 19 18 22 22 C 1.38761 * 120.06264 * 269.72810 * 21 20 19 23 23 C 1.38134 * 119.94212 * 179.74527 * 22 21 20 24 24 C 1.38273 * 120.06190 * 0.50486 * 23 22 21 25 25 C 1.38281 * 120.11231 * 359.77092 * 24 23 22 26 26 C 1.38134 * 120.05598 * 359.97438 * 25 24 23 27 27 C 1.38927 * 119.87561 * 359.97438 * 19 18 17 28 28 F 1.35098 * 120.05268 * 180.02562 * 27 19 18 29 29 C 1.38258 * 119.93718 * 79.72421 * 16 2 1 30 30 H 1.09005 * 109.47657 * 59.99961 * 1 2 3 31 31 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46902 * 299.99966 * 1 2 3 33 33 H 0.96997 * 119.99546 * 275.00521 * 4 2 1 34 34 H 0.96996 * 119.99794 * 179.97438 * 11 10 8 35 35 H 1.07994 * 119.94913 * 359.97438 * 17 16 2 36 36 H 1.07995 * 120.01496 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.02473 * 359.97438 * 22 21 20 38 38 H 1.08001 * 119.96601 * 180.27854 * 23 22 21 39 39 H 1.07993 * 119.94451 * 179.74971 * 24 23 22 40 40 H 1.07995 * 119.96777 * 179.97438 * 25 24 23 41 41 H 1.08007 * 120.02314 * 179.97438 * 26 25 24 42 42 H 1.08007 * 119.98089 * 359.97438 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4120 0.1771 -2.5506 6 8 2.8775 -0.7635 -3.5086 7 8 1.3246 1.0593 -2.7922 8 6 3.7926 1.1910 -2.1372 9 1 4.2102 1.1550 -1.1419 10 6 4.3404 2.0294 -3.0849 11 7 3.8328 2.0721 -4.2974 12 14 5.8045 3.1037 -2.6469 13 1 7.0619 2.3670 -2.9320 14 1 5.7653 4.3479 -3.4567 15 1 5.7501 3.4504 -1.2040 16 6 2.0323 -0.7103 1.2304 17 6 2.4586 0.0211 2.3238 18 6 2.9203 -0.6268 3.4534 19 6 2.9560 -2.0127 3.4913 20 8 3.4105 -2.6521 4.6016 21 6 3.8095 -1.8937 5.6560 22 6 5.1314 -1.4839 5.7568 23 6 5.5332 -0.7086 6.8271 24 6 4.6219 -0.3496 7.8031 25 6 3.3053 -0.7615 7.7081 26 6 2.8971 -1.5325 6.6371 27 6 2.5265 -2.7463 2.3925 28 9 2.5593 -4.0964 2.4256 29 6 2.0609 -2.0922 1.2660 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.1109 -1.6561 -1.1949 34 1 4.2180 2.6622 -4.9639 35 1 2.4312 1.1003 2.2943 36 1 3.2533 -0.0542 4.3064 37 1 5.8446 -1.7677 4.9970 38 1 6.5609 -0.3856 6.9035 39 1 4.9390 0.2532 8.6411 40 1 2.5956 -0.4801 8.4719 41 1 1.8687 -1.8543 6.5636 42 1 1.7228 -2.6612 0.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:34 Heat of formation + Delta-G solvation = -137.540088 kcal Electronic energy + Delta-G solvation = -29936.961017 eV Core-core repulsion = 25501.490007 eV Total energy + Delta-G solvation = -4435.471011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.92004 -41.94266 -40.16412 -38.75435 -37.38530 -36.46581 -36.08320 -35.14030 -32.03626 -31.99175 -31.61227 -30.90807 -29.44581 -28.22953 -25.38484 -23.99693 -23.71745 -23.29743 -21.92113 -21.04402 -19.89532 -19.32754 -18.71029 -18.32770 -17.63977 -17.40642 -17.29843 -17.07770 -16.70353 -16.44872 -16.34420 -15.88598 -15.52723 -15.24260 -15.08980 -14.88987 -14.69728 -14.43921 -14.31279 -14.01884 -13.91842 -13.62221 -13.47272 -13.33768 -13.12211 -12.99930 -12.77967 -12.57087 -12.47233 -12.41755 -12.34365 -12.28277 -12.23538 -11.85921 -11.76724 -11.22834 -10.99394 -10.30346 -10.06051 -9.97641 -9.78957 -9.28675 -8.72782 -7.44866 0.02273 0.03213 0.05600 0.33291 0.41371 1.35991 1.36771 1.52223 1.98405 2.22447 2.42023 2.61353 2.76728 2.98699 3.11090 3.49938 3.65797 3.79035 3.90464 3.92855 3.95532 4.13200 4.21085 4.27340 4.30784 4.37355 4.43800 4.51069 4.51579 4.67448 4.76510 4.78815 4.90194 4.99813 5.01195 5.05964 5.17713 5.30001 5.36820 5.37474 5.39919 5.49634 5.53560 5.57597 5.84636 5.93700 6.34855 6.43140 6.81839 8.23585 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.002760 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.269162 B =10141.811662 C =11487.043389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.194 3.806 3 H 0.097 0.903 4 N -1.117 6.117 5 S 2.721 3.279 6 O -1.048 7.048 7 O -1.034 7.034 8 C -1.038 5.038 9 H 0.121 0.879 10 C 0.072 3.928 11 N -0.894 5.894 12 Si 0.987 3.013 13 H -0.260 1.260 14 H -0.264 1.264 15 H -0.243 1.243 16 C -0.085 4.085 17 C -0.074 4.074 18 C -0.156 4.156 19 C 0.081 3.919 20 O -0.271 6.271 21 C 0.052 3.948 22 C -0.139 4.139 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.134 4.134 27 C 0.057 3.943 28 F -0.143 7.143 29 C -0.109 4.109 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.412 0.588 34 H 0.298 0.702 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -2.216 26.908 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.087 3.913 3 H 0.115 0.885 4 N -0.876 5.876 5 S 2.822 3.178 6 O -1.039 7.039 7 O -1.023 7.023 8 C -1.171 5.171 9 H 0.139 0.861 10 C -0.141 4.141 11 N -0.526 5.526 12 Si 0.805 3.195 13 H -0.184 1.184 14 H -0.188 1.188 15 H -0.166 1.166 16 C -0.087 4.087 17 C -0.093 4.093 18 C -0.175 4.175 19 C 0.038 3.962 20 O -0.184 6.184 21 C 0.011 3.989 22 C -0.157 4.157 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.152 4.152 27 C 0.037 3.963 28 F -0.122 7.122 29 C -0.128 4.128 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.108 0.892 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.151 0.849 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.232 -2.293 25.896 25.998 hybrid contribution 1.050 -0.392 -0.195 1.137 sum 0.818 -2.684 25.701 25.854 Atomic orbital electron populations 1.22324 0.93285 1.03348 1.03384 1.19671 0.95114 0.95605 0.80935 0.88466 1.55639 1.83452 1.18929 1.29575 0.99886 0.74612 0.72518 0.70765 1.93313 1.83508 1.65752 1.61282 1.93316 1.57486 1.66977 1.84545 1.30906 1.37197 1.40771 1.08238 0.86052 1.25970 0.99808 0.95629 0.92706 1.69994 1.41257 1.36468 1.04857 0.85178 0.76637 0.77248 0.80443 1.18440 1.18813 1.16595 1.19788 1.00351 0.92638 0.95925 1.21212 0.95325 1.01840 0.90923 1.21246 1.04159 0.91204 1.00889 1.19274 0.98595 0.92037 0.86332 1.84402 1.78091 1.34456 1.21471 1.18960 0.93734 0.97897 0.88303 1.21578 0.95022 0.98466 1.00635 1.21407 1.01535 0.96520 0.93042 1.21703 0.92978 0.99032 0.99243 1.21433 0.97230 0.96263 0.97333 1.21578 0.99878 0.98522 0.95209 1.17015 1.07822 0.76731 0.94689 1.91466 1.94882 1.28937 1.96870 1.20867 1.00278 0.94957 0.96710 0.92685 0.91242 0.89022 0.75380 0.89205 0.82134 0.82882 0.85559 0.83004 0.82452 0.82548 0.84895 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 9.49 71.98 0.68 -3.86 16 2 C 0.19 6.03 2.97 44.24 0.13 6.16 16 3 H 0.10 3.11 7.71 -2.38 -0.02 3.10 16 4 N -1.12 -42.25 5.43 -172.52 -0.94 -43.19 16 5 S 2.72 141.89 4.93 -56.49 -0.28 141.62 16 6 O -1.05 -62.32 18.02 -128.00 -2.31 -64.62 16 7 O -1.03 -58.93 17.28 -128.00 -2.21 -61.14 16 8 C -1.04 -55.20 9.58 67.74 0.65 -54.55 16 9 H 0.12 5.76 7.81 -2.91 -0.02 5.73 16 10 C 0.07 3.91 5.46 84.66 0.46 4.37 16 11 N -0.89 -52.67 13.19 21.45 0.28 -52.39 16 12 Si 0.99 40.27 29.54 68.60 2.03 42.29 16 13 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 14 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 15 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 16 C -0.09 -2.25 4.96 -19.85 -0.10 -2.35 16 17 C -0.07 -1.67 9.66 22.26 0.22 -1.46 16 18 C -0.16 -3.44 9.20 22.36 0.21 -3.23 16 19 C 0.08 2.11 6.68 22.54 0.15 2.26 16 20 O -0.27 -7.11 9.85 -36.08 -0.36 -7.46 16 21 C 0.05 1.08 3.95 22.52 0.09 1.17 16 22 C -0.14 -2.45 9.89 22.37 0.22 -2.23 16 23 C -0.11 -1.30 10.04 22.25 0.22 -1.08 16 24 C -0.11 -1.06 10.04 22.29 0.22 -0.84 16 25 C -0.10 -1.13 10.04 22.26 0.22 -0.91 16 26 C -0.13 -2.15 9.92 22.37 0.22 -1.93 16 27 C 0.06 1.60 7.31 22.46 0.16 1.77 16 28 F -0.14 -4.31 17.11 44.97 0.77 -3.54 16 29 C -0.11 -2.91 9.12 22.30 0.20 -2.71 16 30 H 0.05 1.81 7.64 -2.38 -0.02 1.79 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.41 13.70 7.09 -96.75 -0.69 13.02 16 34 H 0.30 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.16 2.84 8.03 -2.91 -0.02 2.82 16 36 H 0.15 2.82 6.68 -2.91 -0.02 2.81 16 37 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.15 3.70 6.83 -2.91 -0.02 3.68 16 Total: -1.00 -78.27 381.66 1.35 -76.92 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.39 Total: 30.94 kcal Atomic # 6 Polarization: -63.39 SS G_CDS: 3.97 Total: -59.42 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -0.65 Total: -95.58 kcal Atomic # 8 Polarization: -128.36 SS G_CDS: -4.87 Total: -133.23 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.77 Total: -3.54 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 141.89 SS G_CDS: -0.28 Total: 141.62 kcal Total: -78.27 1.35 -76.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.615 kcal (2) G-P(sol) polarization free energy of solvation -78.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds